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Antifungal protein
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PDB id
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1pcv
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Contents |
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* Residue conservation analysis
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Gene Ontology (GO) functional annotation
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Cellular component
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vacuole
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1 term
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Biological process
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response to stress
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3 terms
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DOI no:
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Proteins
54:170-173
(2004)
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PubMed id:
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Crystal structure of osmotin, a plant antifungal protein.
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K.Min,
S.C.Ha,
P.M.Hasegawa,
R.A.Bressan,
D.J.Yun,
K.K.Kim.
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ABSTRACT
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Selected figure(s)
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Figure 1.
Figure 1. (A) Ribbon diagram of osmotin viewing along the
cleft. The three domains are colored red (domain I), blue
(domain II), and yellow (domain III). N- and C-termini are
labeled. Residues (Glu84, Asp97, Asp102, and Asp185) around the
acidic cleft are drawn in green stick models. The figure was
drawn using MOLSCRIPT.[16] (B) Stereo diagram of the
superposition of the C traces
of osmotin (red), PR-5d (magenta), zeamatin (green), and
thaumatin (blue) in the same orientation with (A). An arrow
indicates the thaumatin loop in domain I.
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Figure 2.
Figure 2. Surface representation of the clefts of osmotin (A),
PR-5d (B), zeamatin (C), and thaumatin (D), depicting the
electrostatic potential with a color scale that varies from blue
to red, representing positive and negative potential,
respectively.
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The above figures are
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2004,
54,
170-173)
copyright 2004.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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B.Petre,
I.Major,
N.Rouhier,
and
S.Duplessis
(2011).
Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar.
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BMC Plant Biol, 11,
33.
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M.Miele,
S.Costantini,
and
G.Colonna
(2011).
Structural and functional similarities between osmotin from Nicotiana tabacum seeds and human adiponectin.
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PLoS One, 6,
e16690.
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V.L.Soares,
S.M.Rodrigues,
T.M.de Oliveira,
T.O.de Queiroz,
L.S.Lima,
B.T.Hora-Júnior,
K.P.Gramacho,
F.Micheli,
J.C.Cascardo,
W.C.Otoni,
A.S.Gesteira,
and
M.G.Costa
(2011).
Unraveling new genes associated with seed development and metabolism in Bixa orellana L. by expressed sequence tag (EST) analysis.
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Mol Biol Rep, 38,
1329-1340.
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X.Ren,
Q.Kong,
P.Wang,
F.Jiang,
H.Wang,
T.Yu,
and
X.Zheng
(2011).
Molecular cloning of a PR-5 like protein gene from cherry tomato and analysis of the response of this gene to abiotic stresses.
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Mol Biol Rep, 38,
801-807.
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Y.M.Tzou,
T.S.Huang,
K.W.Huggins,
B.A.Chin,
A.H.Simonne,
and
N.K.Singh
(2011).
Expression of truncated tobacco osmotin in Escherichia coli: purification and antifungal activity.
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Biotechnol Lett, 33,
539-543.
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J.J.Liu,
A.Zamani,
and
A.K.Ekramoddoullah
(2010).
Expression profiling of a complex thaumatin-like protein family in western white pine.
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Planta, 231,
637-651.
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J.J.Liu,
R.Sturrock,
and
A.K.Ekramoddoullah
(2010).
The superfamily of thaumatin-like proteins: its origin, evolution, and expression towards biological function.
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Plant Cell Rep, 29,
419-436.
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J.P.Zhao,
and
X.H.Su
(2010).
Patterns of molecular evolution and predicted function in thaumatin-like proteins of Populus trichocarpa.
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Planta, 232,
949-962.
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N.J.Dafoe,
B.E.Gowen,
and
C.P.Constabel
(2010).
Thaumatin-like proteins are differentially expressed and localized in phloem tissues of hybrid poplar.
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BMC Plant Biol, 10,
191.
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N.Y.Villa,
B.R.Kupchak,
I.Garitaonandia,
J.L.Smith,
E.Alonso,
C.Alford,
L.A.Cowart,
Y.A.Hannun,
and
T.J.Lyons
(2009).
Sphingolipids function as downstream effectors of a fungal PAQR.
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Mol Pharmacol, 75,
866-875.
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F.Perri,
F.Romitelli,
F.Rufini,
F.Secundo,
E.Di Stasio,
B.Giardina,
and
A.Vitali
(2008).
Different structural behaviors evidenced in thaumatin-like proteins: a spectroscopic study.
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Protein J, 27,
13-20.
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R.Ghosh,
and
C.Chakrabarti
(2008).
Crystal structure analysis of NP24-I: a thaumatin-like protein.
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Planta, 228,
883-890.
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PDB code:
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S.D'Angeli,
and
M.M.Altamura
(2007).
Osmotin induces cold protection in olive trees by affecting programmed cell death and cytoskeleton organization.
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Planta, 225,
1147-1163.
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R.G.Shatters,
L.M.Boykin,
S.L.Lapointe,
W.B.Hunter,
and
A.A.Weathersbee
(2006).
Phylogenetic and structural relationships of the PR5 gene family reveal an ancient multigene family conserved in plants and select animal taxa.
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J Mol Evol, 63,
12-29.
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M.J.Kim,
B.K.Ham,
H.R.Kim,
I.J.Lee,
Y.J.Kim,
K.H.Ryu,
Y.I.Park,
and
K.H.Paek
(2005).
In vitro and in planta interaction evidence between Nicotiana tabacum thaumatin-like protein 1 (TLP1) and cucumber mosaic virus proteins.
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Plant Mol Biol, 59,
981-994.
|
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|
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M.L.Narasimhan,
M.A.Coca,
J.Jin,
T.Yamauchi,
Y.Ito,
T.Kadowaki,
K.K.Kim,
J.M.Pardo,
B.Damsz,
P.M.Hasegawa,
D.J.Yun,
and
R.A.Bressan
(2005).
Osmotin is a homolog of mammalian adiponectin and controls apoptosis in yeast through a homolog of mammalian adiponectin receptor.
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Mol Cell, 17,
171-180.
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|
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Y.Dall'Antonia,
T.Pavkov,
H.Fuchs,
H.Breiteneder,
and
W.Keller
(2005).
Crystallization and preliminary structure determination of the plant food allergen Pru av 2.
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Acta Crystallogr Sect F Struct Biol Cryst Commun, 61,
186-188.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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