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Bacterial cell division inhibitor PDB id
1ofu
Jmol
Contents
Protein chains
307 a.a. *
119 a.a. *
Ligands
GDP ×2
Waters ×441
* Residue conservation analysis
PDB id:
1ofu
Name: Bacterial cell division inhibitor
Title: Crystal structure of sula:ftsz from pseudomonas aeruginosa
Structure: Hypothetical protein pa3008. Chain: x, y. Fragment: residues 43-161. Synonym: sula. Engineered: yes. Other_details: first 42 residues removed from n-terminus. Cell division protein ftsz. Chain: a, b. Fragment: residues 1-320.
Source: Pseudomonas aeruginosa. Organism_taxid: 287. Expressed in: escherichia coli. Expression_system_taxid: 562.
Biol. unit: Tetramer (from PDB file)
Resolution:
2.10Å     R-factor:   0.215     R-free:   0.255
Authors: S.C.Cordell,E.J.H.Robinson,J.Lowe
Key ref:
S.C.Cordell et al. (2003). Crystal structure of the SOS cell division inhibitor SulA and in complex with FtsZ. Proc Natl Acad Sci U S A, 100, 7889-7894. PubMed id: 12808143 DOI: 10.1073/pnas.1330742100
Date:
21-Apr-03     Release date:   19-Jun-03    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P47204  (FTSZ_PSEAE) -  Cell division protein FtsZ
Seq:
Struc:
394 a.a.
307 a.a.
Protein chains
Pfam   ArchSchema ?
Q9HZJ8  (SULA_PSEAE) -  Cell division inhibitor SulA
Seq:
Struc:
161 a.a.
119 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     protein complex   3 terms 
  Biological process     negative regulation of cell division   3 terms 
  Biochemical function     GTP binding     2 terms  

 

 
DOI no: 10.1073/pnas.1330742100 Proc Natl Acad Sci U S A 100:7889-7894 (2003)
PubMed id: 12808143  
 
 
Crystal structure of the SOS cell division inhibitor SulA and in complex with FtsZ.
S.C.Cordell, E.J.Robinson, J.Lowe.
 
  ABSTRACT  
 
SulA halts cell division in Escherichia coli by binding to the major component of the division machinery FtsZ. We have solved the crystal structure of SulA alone and in complex with FtsZ from Pseudomonas aeruginosa. SulA is expressed when the SOS response is induced. This is a mechanism to inhibit cell division and repair DNA in the event of DNA damage. FtsZ is a tubulin-like protein that forms polymers, with the active-site GTPase split across two monomers. One monomer provides the GTP-binding site and the other, through its T7 loop nucleotide hydrolysis. Our structures show that SulA is a dimer, and that SulA inhibits cell division neither by binding the nucleotide-binding site nor by inducing conformational changes in FtsZ. Instead, SulA binds the T7 loop surface of FtsZ, opposite the nucleotide-binding site, blocking polymer formation. These findings explain why GTP hydrolysis and polymer turnover are required for SulA inhibition.
 
  Selected figure(s)  
 
Figure 3.
Fig. 3. Structural similarity of the SulA monomer (PDB ID code 1OFT) and the N-terminal domain of E. coli RecA (PDB ID code 2REB [PDB] ; ref. 33). The structures have been aligned with an rms deviation of 2.4 Å over 112 C atoms (of 119 for SulA).
Figure 6.
Fig. 6. Model showing how SulA could crosslink the ends of FtsZ protofilaments. The complex is as in Fig. 4. FtsZ monomers, shown in gray, could theoretically bind to each and of the complex in a protofilament-like structure where the T7 loop from one monomer contacts the GTP-binding site from the previous monomer (17).
 
  Figures were selected by the author.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
21321206 H.Cho, H.R.McManus, S.L.Dove, and T.G.Bernhardt (2011).
Nucleoid occlusion factor SlmA is a DNA-activated FtsZ polymerization antagonist.
  Proc Natl Acad Sci U S A, 108, 3773-3778.  
20400548 A.H.Mo, and W.F.Burkholder (2010).
YneA, an SOS-induced inhibitor of cell division in Bacillus subtilis, is regulated posttranslationally and requires the transmembrane region for activity.
  J Bacteriol, 192, 3159-3173.  
20711458 I.F.de Oliveira, A.de Sousa Borges, V.Kooij, J.Bartosiak-Jentys, J.Luirink, and D.J.Scheffers (2010).
Characterization of ftsZ mutations that render Bacillus subtilis resistant to MinC.
  PLoS One, 5, e12048.  
20410587 K.W.Shimotohno, F.Kawamura, Y.Natori, H.Nanamiya, J.Magae, H.Ogata, T.Endo, T.Suzuki, and H.Yamaki (2010).
Inhibition of septation in Bacillus subtilis by a peptide antibiotic, edeine B(1).
  Biol Pharm Bull, 33, 568-571.  
20043048 P.Gupta, H.Rajeswari, M.Arumugam, S.Mishra, R.Bhagavat, P.Anand, N.Chandra, R.Srinivasan, S.Indi, and P.Ajitkumar (2010).
Mycobacterium tuberculosis FtsZ requires at least one arginine residue at the C-terminal end for polymerization in vitro.
  Acta Biochim Biophys Sin (Shanghai), 42, 58-69.  
20022957 S.Sugimoto, K.Yamanaka, S.Nishikori, A.Miyagi, T.Ando, and T.Ogura (2010).
AAA+ chaperone ClpX regulates dynamics of prokaryotic cytoskeletal protein FtsZ.
  J Biol Chem, 285, 6648-6657.  
19383143 A.Raymond, S.Lovell, D.Lorimer, J.Walchli, M.Mixon, E.Wallace, K.Thompkins, K.Archer, A.Burgin, and L.Stewart (2009).
Combined protein construct and synthetic gene engineering for heterologous protein expression and crystallization using Gene Composer.
  BMC Biotechnol, 9, 37.
PDB codes: 2rhh 2rhj 2rhl 2rho
19680248 D.W.Adams, and J.Errington (2009).
Bacterial cell division: assembly, maintenance and disassembly of the Z ring.
  Nat Rev Microbiol, 7, 642-653.  
18768164 J.Löwe, and L.A.Amos (2009).
Evolution of cytomotive filaments: the cytoskeleton from prokaryotes to eukaryotes.
  Int J Biochem Cell Biol, 41, 323-329.  
19541655 J.L.Camberg, J.R.Hoskins, and S.Wickner (2009).
ClpXP protease degrades the cytoskeletal protein, FtsZ, and modulates FtsZ polymer dynamics.
  Proc Natl Acad Sci U S A, 106, 10614-10619.  
19779463 M.Osawa, D.E.Anderson, and H.P.Erickson (2009).
Curved FtsZ protofilaments generate bending forces on liposome membranes.
  EMBO J, 28, 3476-3484.  
19220747 P.Vats, Y.L.Shih, and L.Rothfield (2009).
Assembly of the MreB-associated cytoskeletal ring of Escherichia coli.
  Mol Microbiol, 72, 170-182.  
18245292 A.Dajkovic, A.Mukherjee, and J.Lutkenhaus (2008).
Investigation of regulation of FtsZ assembly by SulA and development of a model for FtsZ polymerization.
  J Bacteriol, 190, 2513-2526.  
18394147 G.Ebersbach, E.Galli, J.Møller-Jensen, J.Löwe, and K.Gerdes (2008).
Novel coiled-coil cell division factor ZapB stimulates Z ring assembly and cell division.
  Mol Microbiol, 68, 720-735.  
18086211 H.Ogino, H.Teramoto, M.Inui, and H.Yukawa (2008).
DivS, a novel SOS-inducible cell-division suppressor in Corynebacterium glutamicum.
  Mol Microbiol, 67, 597-608.  
18157153 S.S.Justice, D.A.Hunstad, L.Cegelski, and S.J.Hultgren (2008).
Morphological plasticity as a bacterial survival strategy.
  Nat Rev Microbiol, 6, 162-168.  
17307852 B.D.Corbin, Y.Wang, T.K.Beuria, and W.Margolin (2007).
Interaction between cell division proteins FtsE and FtsZ.
  J Bacteriol, 189, 3026-3035.  
17043119 C.Possoz, J.Newmark, N.Sorto, D.J.Sherratt, and M.E.Tolmasky (2007).
Sublethal concentrations of the aminoglycoside amikacin interfere with cell division without affecting chromosome dynamics.
  Antimicrob Agents Chemother, 51, 252-256.  
17563102 H.P.Erickson (2007).
Evolution of the cytoskeleton.
  Bioessays, 29, 668-677.  
17328675 J.Lutkenhaus (2007).
Assembly dynamics of the bacterial MinCDE system and spatial regulation of the Z ring.
  Annu Rev Biochem, 76, 539-562.  
17451550 J.M.Glynn, S.Y.Miyagishima, D.W.Yoder, K.W.Osteryoung, and S.Vitha (2007).
Chloroplast division.
  Traffic, 8, 451-461.  
17233825 M.A.Gerding, Y.Ogata, N.D.Pecora, H.Niki, and P.A.de Boer (2007).
The trans-envelope Tol-Pal complex is part of the cell division machinery and required for proper outer-membrane invagination during cell constriction in E. coli.
  Mol Microbiol, 63, 1008-1025.  
17656575 R.Díaz-Espinoza, A.P.Garcés, J.J.Arbildua, F.Montecinos, J.E.Brunet, R.Lagos, and O.Monasterio (2007).
Domain folding and flexibility of Escherichia coli FtsZ determined by tryptophan site-directed mutagenesis.
  Protein Sci, 16, 1543-1556.  
17518418 R.Srinivasan, and P.Ajitkumar (2007).
Bacterial cell division protein FtsZ is stable against degradation by AAA family protease FtsH in Escherichia coli cells.
  J Basic Microbiol, 47, 251-259.  
16942606 A.Chauhan, H.Lofton, E.Maloney, J.Moore, M.Fol, M.V.Madiraju, and M.Rajagopalan (2006).
Interference of Mycobacterium tuberculosis cell division by Rv2719c, a cell wall hydrolase.
  Mol Microbiol, 62, 132-147.  
16756499 K.A.Michie, and J.Löwe (2006).
Dynamic filaments of the bacterial cytoskeleton.
  Annu Rev Biochem, 75, 467-492.  
17024474 W.Vollmer (2006).
The prokaryotic cytoskeleton: a putative target for inhibitors and antibiotics?
  Appl Microbiol Biotechnol, 73, 37-47.  
15802652 M.K.Azim, W.Goehring, H.K.Song, R.Ramachandran, M.Bochtler, and P.Goettig (2005).
Characterization of the HslU chaperone affinity for HslV protease.
  Protein Sci, 14, 1357-1362.  
16267290 N.Au, E.Kuester-Schoeck, V.Mandava, L.E.Bothwell, S.P.Canny, K.Chachu, S.A.Colavito, S.N.Fuller, E.S.Groban, L.A.Hensley, T.C.O'Brien, A.Shah, J.T.Tierney, L.L.Tomm, T.M.O'Gara, A.I.Goranov, A.D.Grossman, and C.M.Lovett (2005).
Genetic composition of the Bacillus subtilis SOS system.
  J Bacteriol, 187, 7655-7666.  
15838050 N.Grantcharova, U.Lustig, and K.Flärdh (2005).
Dynamics of FtsZ assembly during sporulation in Streptomyces coelicolor A3(2).
  J Bacteriol, 187, 3227-3237.  
15948963 R.B.Weart, S.Nakano, B.E.Lane, P.Zuber, and P.A.Levin (2005).
The ClpX chaperone modulates assembly of the tubulin-like protein FtsZ.
  Mol Microbiol, 57, 238-249.  
16030231 S.Campoy, N.Salvador, P.Cortés, I.Erill, and J.Barbé (2005).
Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus.
  J Bacteriol, 187, 5367-5375.  
15805519 S.D.Redick, J.Stricker, G.Briscoe, and H.P.Erickson (2005).
Mutants of FtsZ targeting the protofilament interface: effects on cell division and GTPase activity.
  J Bacteriol, 187, 2727-2736.  
16227976 W.Margolin (2005).
FtsZ and the division of prokaryotic cells and organelles.
  Nat Rev Mol Cell Biol, 6, 862-871.  
15826938 Y.Chen, and H.P.Erickson (2005).
Rapid in vitro assembly dynamics and subunit turnover of FtsZ demonstrated by fluorescence resonance energy transfer.
  J Biol Chem, 280, 22549-22554.  
16321953 Y.Wang, and X.Xu (2005).
Regulation by hetC of genes required for heterocyst differentiation and cell division in Anabaena sp. strain PCC 7120.
  J Bacteriol, 187, 8489-8493.  
15289600 D.N.Margalit, L.Romberg, R.B.Mets, A.M.Hebert, T.J.Mitchison, M.W.Kirschner, and D.RayChaudhuri (2004).
Targeting cell division: small-molecule inhibitors of FtsZ GTPase perturb cytokinetic ring assembly and induce bacterial lethality.
  Proc Natl Acad Sci U S A, 101, 11821-11826.  
15101985 D.P.Haeusser, R.L.Schwartz, A.M.Smith, M.E.Oates, and P.A.Levin (2004).
EzrA prevents aberrant cell division by modulating assembly of the cytoskeletal protein FtsZ.
  Mol Microbiol, 52, 801-814.  
15491352 D.S.Weiss (2004).
Bacterial cell division and the septal ring.
  Mol Microbiol, 54, 588-597.  
15387814 J.D.McCool, E.Long, J.F.Petrosino, H.A.Sandler, S.M.Rosenberg, and S.J.Sandler (2004).
Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy.
  Mol Microbiol, 53, 1343-1357.  
15139810 J.Löwe, F.van den Ent, and L.A.Amos (2004).
Molecules of the bacterial cytoskeleton.
  Annu Rev Biophys Biomol Struct, 33, 177-198.  
15120068 J.Maple, M.T.Fujiwara, N.Kitahata, T.Lawson, N.R.Baker, S.Yoshida, and S.G.Møller (2004).
GIANT CHLOROPLAST 1 is essential for correct plastid division in Arabidopsis.
  Curr Biol, 14, 776-781.  
15037301 L.A.Amos, F.van den Ent, and J.Löwe (2004).
Structural/functional homology between the bacterial and eukaryotic cytoskeletons.
  Curr Opin Cell Biol, 16, 24-31.  
15558053 M.A.Oliva, S.C.Cordell, and J.Löwe (2004).
Structural insights into FtsZ protofilament formation.
  Nat Struct Mol Biol, 11, 1243-1250.
PDB codes: 1w58 1w59 1w5a 1w5b 1w5e 1w5f
14729718 S.J.Arends, and D.S.Weiss (2004).
Inhibiting cell division in Escherichia coli has little if any effect on gene expression.
  J Bacteriol, 186, 880-884.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.