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Hydrolase PDB-id
1o7j
Biological unit = asymmetric unit,
as shown
(as defined in PDB file)
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Contents
Description
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Protein chains
325 a.a. *
Ligands
SO4 ×8
GOL ×2
EDO-EDO-EDO-EDO-
EDO

EDO-EDO-EDO
EDO-EDO-EDO-EDO
Waters ×1360

* Residue conservation analysis
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PDB id: 1o7j
Name: Hydrolase
Title: Atomic resolution structure of erwinia chrysanthemi l-asparaginase

Structure:
L-asparaginase. Chain: a, b, c, d. Synonym: l-asparagine amidohydrolase, l-asnase. Ec: 3.5.1.1

Source:
Erwinia chrysanthemi. Organism_taxid: 556

Biological unit:
Tetramer (from PDB file)

UniProt:
Chains A, B, C, D: P06608 (ASPG_ERWCH)
Pfam   ArchSchema ?
Seq:
Struc:
Seq: 348 a.a.
Struc: 325 a.a.*
Key:    PfamA domain
 Secondary structure  CATH domain
* PDB and UniProt seqs differ at 4 residue positions (black crosses)

Enzyme class:
E.C.3.5.1.1   [IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

Reaction:
L-asparagine + H2O = L-aspartate + NH3 (see diagram below)

Resolution:
1.0Å

R-factor:
0.109

R-free:
0.128

Authors:
J.Lubkowski,M.Dauter,K.Aghaiypour,A.Wlodawer,Z.Dauter

Key ref:
J.Lubkowski et al. (2003). Atomic resolution structure of Erwinia chrysanthemi L-asparaginase.. Acta Crystallogr D Biol Crystallogr, 59, 84-92. [PubMed id: 12499544] [DOI: 10.1107/S0907444902019443]

Date:
07-Nov-02

Release date:
04-Dec-02

Related entries:
1hfj asparaginase from erwinia chrysanthemi, hexagonal form with sulfate
1hfk asparaginase from erwinia chrysanthemi, hexagonal form with partial sulfate
1hfw x-ray structure of the complex between erwinia chrysanthemi l-asparaginase and l- glutamate
1hg0 x-ray structure of the complex between erwinia chrysanthemi l-asparaginase and succinic acid
1hg1 x-ray structure of the complex between erwinia chrysanthemi l-asparaginase and d- aspartate
1jsl crystal structure of erwinia chrysanthemi l- asparaginasecomplexed with 6-hydroxy-d- norleucine
1jsr crystal structure of erwinia chrysanthemi l- asparaginasecomplexed with 6-hydroxy-l- norleucine
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Surface
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Enzyme reaction for E.C.3.5.1.1


L-asparagine
+ H(2)O
=
L-aspartate
+ NH(3)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site.

 
    Key reference    
 
 
DOI no: 10.1107/S0907444902019443 Acta Crystallogr D Biol Crystallogr 59:84-92 (2003)
PubMed id: 12499544  
 
 
Atomic resolution structure of Erwinia chrysanthemi L-asparaginase.
J.Lubkowski, M.Dauter, K.Aghaiypour, A.Wlodawer, Z.Dauter.
 
  ABSTRACT  
 
An X-ray structure of L-asparaginase from Erwinia chrysanthemi (ErA) has been refined at 1 A resolution to an R factor of below 0.1, using data collected on a synchrotron source. With four molecules of the enzyme consisting of 327 amino acids each, this crystal contains one of the largest asymmetric units of a protein refined to date at atomic resolution. Previously, structures of ErA and of related enzymes from other bacterial sources have been refined at resolutions not exceeding 1.7 A; thus, the present structure represents a very significant improvement in the quality of the available models of these proteins and should provide a good basis for future studies of the conformational variability of proteins, identification of subtle conformational features and corroboration of the stereochemical libraries, amongst other things. L-Asparaginases, which are enzymes that catalyze the hydrolysis of L-asparagine to aspartic acid, have been used for over 30 y as therapeutic agents in the treatment of acute childhood lymphoblastic leukemia, although the details of the enzymatic reaction and substrate specificity have not yet been completely elucidated. This atomic resolution structure is a step in that direction.