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PDBsum entry 1o22

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protein links
Unknown function PDB id
1o22
Jmol
Contents
Protein chain
149 a.a.
Waters ×102
PDB id:
1o22
Name: Unknown function
Title: Crystal structure of an orphan protein (tm0875) from thermot maritima at 2.00 a resolution
Structure: Orphan protein tm0875. Chain: a. Engineered: yes
Source: Thermotoga maritima. Organism_taxid: 2336. Gene: tm0875. Expressed in: escherichia coli. Expression_system_taxid: 562.
Biol. unit: Dimer (from PDB file)
Resolution:
2.00Å     R-factor:   0.186     R-free:   0.238
Authors: Joint Center For Structural Genomics (Jcsg)
Key ref:
C.Bakolitsa et al. (2004). Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-A resolution reveals a new fold. Proteins, 56, 607-610. PubMed id: 15229892 DOI: 10.1002/prot.20138
Date:
15-Feb-03     Release date:   01-Apr-03    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q9WZX8  (Q9WZX8_THEMA) -  Uncharacterized protein
Seq:
Struc:
158 a.a.
149 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1002/prot.20138 Proteins 56:607-610 (2004)
PubMed id: 15229892  
 
 
Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-A resolution reveals a new fold.
C.Bakolitsa, R.Schwarzenbacher, D.McMullan, L.S.Brinen, J.M.Canaves, X.Dai, A.M.Deacon, M.A.Elsliger, S.Eshagi, R.Floyd, A.Godzik, C.Grittini, S.K.Grzechnik, L.Jaroszewski, C.Karlak, H.E.Klock, E.Koesema, J.S.Kovarik, A.Kreusch, P.Kuhn, S.A.Lesley, T.M.McPhillips, M.D.Miller, A.Morse, K.Moy, J.Ouyang, R.Page, K.Quijano, A.Robb, G.Spraggon, R.C.Stevens, H.van den Bedem, J.Velasquez, J.Vincent, F.von Delft, X.Wang, B.West, G.Wolf, K.O.Hodgson, J.Wooley, I.A.Wilson.
 
  ABSTRACT  
 
No abstract given.

 
  Selected figure(s)  
 
Figure 1.
Figure 1. Crystal structure of TM0875. A: Stereo ribbon diagram of Thermotoga maritima TM0875 color coded from N-terminus (blue) to C-terminus (red) showing the domain organization. Helices (H1-H4) and -strands ( 1- 9) are indicated. B: Diagram showing the secondary structure elements in TM0875 superimposed on its primary sequence with helices labeled consecutively (H1-H4), -sheets A-C labeled in red, and -hairpins indicated in red. The disordered regions are depicted in dashed lines with the corresponding sequence in brackets.
Figure 2.
Figure 2. A: Ribbon diagram of the TM0875 dimer. B: Ribbon diagram of a superposition of TM0875 (grey) and Yggu from E. coli (blue; PDB: 1n91).
 
  The above figures are reprinted by permission from John Wiley & Sons, Inc.: Proteins (2004, 56, 607-610) copyright 2004.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
17064285 S.B.Conners, E.F.Mongodin, M.R.Johnson, C.I.Montero, K.E.Nelson, and R.M.Kelly (2006).
Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species.
  FEMS Microbiol Rev, 30, 872-905.  
16211521 R.Page, A.M.Deacon, S.A.Lesley, and R.C.Stevens (2005).
Shotgun crystallization strategy for structural genomics II: crystallization conditions that produce high resolution structures for T. maritima proteins.
  J Struct Funct Genomics, 6, 209-217.  
15193310 I.Friedberg, L.Jaroszewski, Y.Ye, and A.Godzik (2004).
The interplay of fold recognition and experimental structure determination in structural genomics.
  Curr Opin Struct Biol, 14, 307-312.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.