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Oxidoreductase PDB id
1nwa
Jmol
Contents
Protein chain
168 a.a. *
Waters ×231
* Residue conservation analysis
PDB id:
1nwa
Name: Oxidoreductase
Title: Structure of mycobacterium tuberculosis methionine sulfoxide reductase a in complex with protein-bound methionine
Structure: Peptide methionine sulfoxide reductase msra. Chain: a. Synonym: protein-methionine-s-oxide reductase. Engineered: yes
Source: Mycobacterium tuberculosis. Organism_taxid: 1773. Gene: msra. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
1.50Å     R-factor:   0.161     R-free:   0.177
Authors: A.B.Taylor,D.M.Benglis Jr.,S.Dhandayuthapani,P.J.Hart,Tb Structural Genomics Consortium (Tbsgc)
Key ref: A.B.Taylor et al. (2003). Structure of Mycobacterium tuberculosis methionine sulfoxide reductase A in complex with protein-bound methionine. J Bacteriol, 185, 4119-4126. PubMed id: 12837786 DOI: 10.1128/JB.185.14.4119-4126.2003
Date:
05-Feb-03     Release date:   08-Jul-03    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P0A5L0  (MSRA_MYCTU) -  Peptide methionine sulfoxide reductase MsrA
Seq:
Struc:
182 a.a.
168 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.1.8.4.11  - Peptide-methionine (S)-S-oxide reductase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction:
1. Peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L- methionine (S)-S-oxide + thioredoxin
2. L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S- oxide + thioredoxin
Peptide-L-methionine
+ thioredoxin disulfide
+ H(2)O
= peptide-L- methionine (S)-S-oxide
+ thioredoxin
L-methionine
+ thioredoxin disulfide
+ H(2)O
= L-methionine (S)-S- oxide
+ thioredoxin
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     oxidation reduction   4 terms 
  Biochemical function     oxidoreductase activity     4 terms  

 

 
    reference    
 
 
DOI no: 10.1128/JB.185.14.4119-4126.2003 J Bacteriol 185:4119-4126 (2003)
PubMed id: 12837786  
 
 
Structure of Mycobacterium tuberculosis methionine sulfoxide reductase A in complex with protein-bound methionine.
A.B.Taylor, D.M.Benglis, S.Dhandayuthapani, P.J.Hart.
 
  ABSTRACT  
 
Peptide methionine sulfoxide reductase (MsrA) repairs oxidative damage to methionine residues arising from reactive oxygen species and reactive nitrogen intermediates. MsrA activity is found in a wide variety of organisms, and it is implicated as one of the primary defenses against oxidative stress. Disruption of the gene encoding MsrA in several pathogenic bacteria responsible for infections in humans results in the loss of their ability to colonize host cells. Here, we present the X-ray crystal structure of MsrA from the pathogenic bacterium Mycobacterium tuberculosis refined to 1.5 A resolution. In contrast to the three catalytic cysteine residues found in previously characterized MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The structure reveals a methionine residue of one MsrA molecule bound at the active site of a neighboring molecule in the crystal lattice and thus serves as an excellent model for protein-bound methionine sulfoxide recognition and repair.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
20969952 D.G.Arias, M.S.Cabeza, E.D.Erben, P.G.Carranza, H.D.Lujan, M.T.Téllez Iñón, A.A.Iglesias, and S.A.Guerrero (2011).
Functional characterization of methionine sulfoxide reductase A from Trypanosoma spp.
  Free Radic Biol Med, 50, 37-46.  
19049972 D.T.Le, B.C.Lee, S.M.Marino, Y.Zhang, D.E.Fomenko, A.Kaya, E.Hacioglu, G.H.Kwak, A.Koc, H.Y.Kim, and V.N.Gladyshev (2009).
Functional analysis of free methionine-R-sulfoxide reductase from Saccharomyces cerevisiae.
  J Biol Chem, 284, 4354-4364.  
19082015 S.A.Stalford, M.A.Fascione, S.J.Sasindran, D.Chatterjee, S.Dhandayuthapani, and W.B.Turnbull (2009).
A natural carbohydrate substrate for Mycobacterium tuberculosis methionine sulfoxide reductase A.
  Chem Commun (Camb), 0, 110-112.  
19400786 Y.K.Kim, Y.J.Shin, W.H.Lee, H.Y.Kim, and K.Y.Hwang (2009).
Structural and kinetic analysis of an MsrA-MsrB fusion protein from Streptococcus pneumoniae.
  Mol Microbiol, 72, 699-709.
PDB codes: 3e0m 3e0o
17928268 L.Shi, C.D.Sohaskey, R.J.North, and M.L.Gennaro (2008).
Transcriptional characterization of the antioxidant response of Mycobacterium tuberculosis in vivo and during adaptation to hypoxia in vitro.
  Tuberculosis (Edinb), 88, 1-6.  
18041903 S.J.Sasindran, S.Saikolappan, and S.Dhandayuthapani (2007).
Methionine sulfoxide reductases and virulence of bacterial pathogens.
  Future Microbiol, 2, 619-630.  
17105189 H.Y.Kim, D.E.Fomenko, Y.E.Yoon, and V.N.Gladyshev (2006).
Catalytic advantages provided by selenocysteine in methionine-S-sulfoxide reductases.
  Biochemistry, 45, 13697-13704.  
16251365 A.Olry, S.Boschi-Muller, H.Yu, D.Burnel, and G.Branlant (2005).
Insights into the role of the metal binding site in methionine-R-sulfoxide reductases B.
  Protein Sci, 14, 2828-2837.  
16262444 H.Y.Kim, and V.N.Gladyshev (2005).
Different catalytic mechanisms in mammalian selenocysteine- and cysteine-containing methionine-R-sulfoxide reductases.
  PLoS Biol, 3, e375.  
15126465 M.F.Hiltz, G.R.Sisson, A.K.Brassinga, E.Garduno, R.A.Garduno, and P.S.Hoffman (2004).
Expression of magA in Legionella pneumophila Philadelphia-1 is developmentally regulated and a marker of formation of mature intracellular forms.
  J Bacteriol, 186, 3038-3045.  
15756465 N.Coudevylle, A.Thureau, S.Azza, S.Boshi-Muller, G.Branlant, and M.T.Cung (2004).
(1)H, (13)C and (15)N resonance assignment of the reduced form of methionine sulfoxide reductase A from Escherichia coli.
  J Biomol NMR, 30, 363-364.  
14675542 C.V.Smith, and J.C.Sacchettini (2003).
Mycobacterium tuberculosis: a model system for structural genomics.
  Curr Opin Struct Biol, 13, 658-664.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.