PDBsum entry 1nei

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Structural genomics, unknown function PDB id
Protein chains
60 a.a.
PDB id:
Name: Structural genomics, unknown function
Title: Solution nmr structure of protein yoag from escherichia coli. Ontario centre for structural proteomics target ec0264_1_60; northeast structural genomics consortium target et94.
Structure: Hypothetical protein yoag. Chain: a, b. Engineered: yes
Source: Escherichia coli. Organism_taxid: 562. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
NMR struc: 19 models
Authors: B.Wu,A.Pineda-Lucena,A.Yee,J.Cort,M.A.Kennedy,A.M.Edwards, C.H.Arrowsmith,Northeast Structural Genomics Consortium (Nesg)
Key ref:
A.Pineda-Lucena et al. (2002). NMR structure of the hypothetical protein encoded by the YjbJ gene from Escherichia coli. Proteins, 47, 572-574. PubMed id: 12001238 DOI: 10.1002/prot.10120.abs
11-Dec-02     Release date:   13-Apr-04    
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Protein chains
Pfam   ArchSchema ?
P64496  (YOAG_ECOLI) -  Protein YoaG
60 a.a.
60 a.a.
Key:    PfamA domain  Secondary structure  CATH domain


DOI no: 10.1002/prot.10120.abs Proteins 47:572-574 (2002)
PubMed id: 12001238  
NMR structure of the hypothetical protein encoded by the YjbJ gene from Escherichia coli.
A.Pineda-Lucena, J.Liao, B.Wu, A.Yee, J.R.Cort, M.A.Kennedy, A.M.Edwards, C.H.Arrowsmith.

  Selected figure(s)  
Figure 1.
Figure 1. A: Sequence alignment of YjbJ with four predicted prokaryotic proteins, gi|16762921 (Salmonella enterica, S. typhi), gi|17938413 (Agrobacterium tumefaciens), gi|16265654 (Sinorizhobium meliloti), and gi|15599932 (Pseudomona aeruginosa). Identical and similar residues are highlighted in black and gray, respectively. Black rectangles correspond to -helical regions of YjbJ. B: Ribbon diagram depicting the averaged minimized NMR structure of YjbJ of Escherichia coli (residues 5-69).
Figure 2.
Figure 2. Stereoview of the backbone (N, C^ , C ) of 20 superimposed NMR-derived structures of YjbJ of E. coli (residues 5-69).
  The above figures are reprinted by permission from John Wiley & Sons, Inc.: Proteins (2002, 47, 572-574) copyright 2002.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
17639604 M.A.Adams, M.D.Suits, J.Zheng, and Z.Jia (2007).
Piecing together the structure-function puzzle: experiences in structure-based functional annotation of hypothetical proteins.
  Proteomics, 7, 2920-2932.  
15704013 W.A.McLaughlin, D.W.Kulp, la Cruz, X.J.Lu, C.L.Lawson, and H.M.Berman (2004).
A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction.
  J Struct Funct Genomics, 5, 255-265.  
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