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* Residue conservation analysis
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Enzyme class:
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Chain A:
E.C.3.1.1.7
- Acetylcholinesterase.
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Reaction:
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Acetylcholine + H2O = choline + acetate
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Acetylcholine
Bound ligand (Het Group name = )
matches with 41.18% similarity
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+
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H(2)O
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=
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choline
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+
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acetate
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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Gene Ontology (GO) functional annotation
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Cellular component
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extracellular region
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17 terms
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Biological process
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modification of morphology or physiology of other organism
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15 terms
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Biochemical function
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hydrolase activity
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11 terms
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DOI no:
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Cell
83:503-512
(1995)
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PubMed id:
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Acetylcholinesterase inhibition by fasciculin: crystal structure of the complex.
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Y.Bourne,
P.Taylor,
P.Marchot.
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ABSTRACT
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The crystal structure of the snake toxin fasciculin, bound to mouse
acetylcholinesterase (mAChE), at 3.2 A resolution reveals a synergistic
three-point anchorage consistent with the picomolar dissociation constant of the
complex. Loop II of fasciculin contains a cluster of hydrophobic residues that
interact with the peripheral anionic site of the enzyme and sterically occlude
substrate access to the catalytic site. Loop I fits in a crevice near the lip of
the gorge to maximize the surface area of contact of loop II at the gorge entry.
The fasciculin core surrounds a protruding loop on the enzyme surface and
stabilizes the whole assembly. Upon binding of fasciculin, subtle structural
rearrangements of AChE occur that could explain the observed residual catalytic
activity of the fasciculin-enzyme complex.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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L.Guo,
A.I.Suarez,
M.R.Braden,
J.M.Gerdes,
and
C.M.Thompson
(2010).
Inhibition of acetylcholinesterase by chromophore-linked fluorophosphonates.
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Bioorg Med Chem Lett, 20,
1194-1197.
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T.L.Rosenberry
(2010).
Strategies to resolve the catalytic mechanism of acetylcholinesterase.
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J Mol Neurosci, 40,
32-39.
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J.Lee,
X.Wang,
B.Di Jeso,
and
P.Arvan
(2009).
The Cholinesterase-like Domain, Essential in Thyroglobulin Trafficking for Thyroid Hormone Synthesis, Is Required for Protein Dimerization.
|
| |
J Biol Chem, 284,
12752-12761.
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O.Sharabi,
Y.Peleg,
E.Mashiach,
E.Vardy,
Y.Ashani,
I.Silman,
J.L.Sussman,
and
J.M.Shifman
(2009).
Design, expression and characterization of mutants of fasciculin optimized for interaction with its target, acetylcholinesterase.
|
| |
Protein Eng Des Sel, 22,
641-648.
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 |
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|
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A.A.Gorfe,
C.E.Chang,
I.Ivanov,
and
J.A.McCammon
(2008).
Dynamics of the acetylcholinesterase tetramer.
|
| |
Biophys J, 94,
1144-1154.
|
 |
|
|
|
|
 |
D.Comoletti,
A.Grishaev,
A.E.Whitten,
P.Taylor,
and
J.Trewhella
(2008).
Characterization of the solution structure of a neuroligin/beta-neurexin complex.
|
| |
Chem Biol Interact, 175,
150-155.
|
 |
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|
|
|
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J.M.Bui,
and
J.Andrew McCammon
(2008).
Intrinsic conformational flexibility of acetylcholinesterase.
|
| |
Chem Biol Interact, 175,
303-304.
|
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|
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R.Alsallaq,
and
H.X.Zhou
(2008).
Electrostatic rate enhancement and transient complex of protein-protein association.
|
| |
Proteins, 71,
320-335.
|
 |
|
|
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|
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T.L.Rosenberry,
L.K.Sonoda,
S.E.Dekat,
B.Cusack,
and
J.L.Johnson
(2008).
Monitoring the reaction of carbachol with acetylcholinesterase by thioflavin T fluorescence and acetylthiocholine hydrolysis.
|
| |
Chem Biol Interact, 175,
235-241.
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|
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T.L.Rosenberry,
L.K.Sonoda,
S.E.Dekat,
B.Cusack,
and
J.L.Johnson
(2008).
Analysis of the reaction of carbachol with acetylcholinesterase using thioflavin T as a coupled fluorescence reporter.
|
| |
Biochemistry, 47,
13056-13063.
|
 |
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X.Chen,
H.Liu,
A.H.Shim,
P.J.Focia,
and
X.He
(2008).
Structural basis for synaptic adhesion mediated by neuroligin-neurexin interactions.
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| |
Nat Struct Mol Biol, 15,
50-56.
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PDB code:
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A.Hildebrandt,
R.Blossey,
S.Rjasanow,
O.Kohlbacher,
and
H.P.Lenhof
(2007).
Electrostatic potentials of proteins in water: a structured continuum approach.
|
| |
Bioinformatics, 23,
e99-103.
|
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|
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D.Comoletti,
A.Grishaev,
A.E.Whitten,
I.Tsigelny,
P.Taylor,
and
J.Trewhella
(2007).
Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering.
|
| |
Structure, 15,
693-705.
|
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|
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I.P.Fabrichny,
P.Leone,
G.Sulzenbacher,
D.Comoletti,
M.T.Miller,
P.Taylor,
Y.Bourne,
and
P.Marchot
(2007).
Structural analysis of the synaptic protein neuroligin and its beta-neurexin complex: determinants for folding and cell adhesion.
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Neuron, 56,
979-991.
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PDB codes:
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J.P.Colletier,
A.Royant,
A.Specht,
B.Sanson,
F.Nachon,
P.Masson,
G.Zaccai,
J.L.Sussman,
M.Goeldner,
I.Silman,
D.Bourgeois,
and
M.Weik
(2007).
Use of a 'caged' analogue to study the traffic of choline within acetylcholinesterase by kinetic crystallography.
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Acta Crystallogr D Biol Crystallogr, 63,
1115-1128.
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PDB codes:
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M.Ahmed,
J.B.Rocha,
C.M.Mazzanti,
A.L.Morsch,
D.Cargnelutti,
M.Corrêa,
V.Loro,
V.M.Morsch,
and
M.R.Schetinger
(2007).
Malathion, carbofuran and paraquat inhibit Bungarus sindanus (krait) venom acetylcholinesterase and human serum butyrylcholinesterase in vitro.
|
| |
Ecotoxicology, 16,
363-369.
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R.Alsallaq,
and
H.X.Zhou
(2007).
Prediction of protein-protein association rates from a transition-state theory.
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Structure, 15,
215-224.
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|
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Y.Cheng,
J.K.Suen,
D.Zhang,
S.D.Bond,
Y.Zhang,
Y.Song,
N.A.Baker,
C.L.Bajaj,
M.J.Holst,
and
J.A.McCammon
(2007).
Finite element analysis of the time-dependent Smoluchowski equation for acetylcholinesterase reaction rate calculations.
|
| |
Biophys J, 92,
3397-3406.
|
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C.Dean,
and
T.Dresbach
(2006).
Neuroligins and neurexins: linking cell adhesion, synapse formation and cognitive function.
|
| |
Trends Neurosci, 29,
21-29.
|
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|
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|
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E.Krejci,
I.Martinez-Pena y Valenzuela,
R.Ameziane,
and
M.Akaaboune
(2006).
Acetylcholinesterase dynamics at the neuromuscular junction of live animals.
|
| |
J Biol Chem, 281,
10347-10354.
|
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F.Dong,
and
H.X.Zhou
(2006).
Electrostatic contribution to the binding stability of protein-protein complexes.
|
| |
Proteins, 65,
87.
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|
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J.M.Bui,
and
J.A.McCammon
(2006).
Protein complex formation by acetylcholinesterase and the neurotoxin fasciculin-2 appears to involve an induced-fit mechanism.
|
| |
Proc Natl Acad Sci U S A, 103,
15451-15456.
|
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J.M.Bui,
Z.Radic,
P.Taylor,
and
J.A.McCammon
(2006).
Conformational transitions in protein-protein association: binding of fasciculin-2 to acetylcholinesterase.
|
| |
Biophys J, 90,
3280-3287.
|
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|
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J.P.Colletier,
D.Fournier,
H.M.Greenblatt,
J.Stojan,
J.L.Sussman,
G.Zaccai,
I.Silman,
and
M.Weik
(2006).
Structural insights into substrate traffic and inhibition in acetylcholinesterase.
|
| |
EMBO J, 25,
2746-2756.
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PDB codes:
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P.J.Houghton,
Y.Ren,
and
M.J.Howes
(2006).
Acetylcholinesterase inhibitors from plants and fungi.
|
| |
Nat Prod Rep, 23,
181-199.
|
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|
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|
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Y.Bourne,
Z.Radic,
G.Sulzenbacher,
E.Kim,
P.Taylor,
and
P.Marchot
(2006).
Substrate and product trafficking through the active center gorge of acetylcholinesterase analyzed by crystallography and equilibrium binding.
|
| |
J Biol Chem, 281,
29256-29267.
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PDB codes:
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Y.Zhang,
G.Xu,
and
C.Bajaj
(2006).
Quality Meshing of Implicit Solvation Models of Biomolecular Structures.
|
| |
Comput Aided Geom Des, 23,
510-530.
|
 |
|
|
|
|
 |
D.Zhang,
J.Suen,
Y.Zhang,
Y.Song,
Z.Radic,
P.Taylor,
M.J.Holst,
C.Bajaj,
N.A.Baker,
and
J.A.McCammon
(2005).
Tetrameric mouse acetylcholinesterase: continuum diffusion rate calculations by solving the steady-state Smoluchowski equation using finite element methods.
|
| |
Biophys J, 88,
1659-1665.
|
 |
|
|
|
|
 |
I.Martinez-Pena y Valenzuela,
R.I.Hume,
E.Krejci,
and
M.Akaaboune
(2005).
In vivo regulation of acetylcholinesterase insertion at the neuromuscular junction.
|
| |
J Biol Chem, 280,
31801-31808.
|
 |
|
|
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|
 |
J.L.Jiménez
(2005).
Does structural and chemical divergence play a role in precluding undesirable protein interactions?
|
| |
Proteins, 59,
757-764.
|
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|
|
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|
 |
M.E.Selkirk,
O.Lazari,
and
J.B.Matthews
(2005).
Functional genomics of nematode acetylcholinesterases.
|
| |
Parasitology, 131,
S3-18.
|
 |
|
|
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|
 |
Y.Bourne,
T.T.Talley,
S.B.Hansen,
P.Taylor,
and
P.Marchot
(2005).
Crystal structure of a Cbtx-AChBP complex reveals essential interactions between snake alpha-neurotoxins and nicotinic receptors.
|
| |
EMBO J, 24,
1512-1522.
|
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PDB code:
|
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|
 |
A.E.Boyd,
C.S.Dunlop,
L.Wong,
Z.Radic,
P.Taylor,
and
D.A.Johnson
(2004).
Nanosecond dynamics of acetylcholinesterase near the active center gorge.
|
| |
J Biol Chem, 279,
26612-26618.
|
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|
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A.Kukkonen,
M.Peräkylä,
K.E.Akerman,
and
J.Näsman
(2004).
Muscarinic toxin 7 selectivity is dictated by extracellular receptor loops.
|
| |
J Biol Chem, 279,
50923-50929.
|
 |
|
|
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|
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H.Dvir,
M.Harel,
S.Bon,
W.Q.Liu,
M.Vidal,
C.Garbay,
J.L.Sussman,
J.Massoulié,
and
I.Silman
(2004).
The synaptic acetylcholinesterase tetramer assembles around a polyproline II helix.
|
| |
EMBO J, 23,
4394-4405.
|
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PDB code:
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|
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J.Stojan,
L.Brochier,
C.Alies,
J.P.Colletier,
and
D.Fournier
(2004).
Inhibition of Drosophila melanogaster acetylcholinesterase by high concentrations of substrate.
|
| |
Eur J Biochem, 271,
1364-1371.
|
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|
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R.E.Hibbs,
T.T.Talley,
and
P.Taylor
(2004).
Acrylodan-conjugated cysteine side chains reveal conformational state and ligand site locations of the acetylcholine-binding protein.
|
| |
J Biol Chem, 279,
28483-28491.
|
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|
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|
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S.Bon,
J.Dufourcq,
J.Leroy,
I.Cornut,
and
J.Massoulié
(2004).
The C-terminal t peptide of acetylcholinesterase forms an alpha helix that supports homomeric and heteromeric interactions.
|
| |
Eur J Biochem, 271,
33-47.
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Y.Bourne,
H.C.Kolb,
Z.Radić,
K.B.Sharpless,
P.Taylor,
and
P.Marchot
(2004).
Freeze-frame inhibitor captures acetylcholinesterase in a unique conformation.
|
| |
Proc Natl Acad Sci U S A, 101,
1449-1454.
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PDB codes:
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Y.N.Park,
and
P.Arvan
(2004).
The acetylcholinesterase homology region is essential for normal conformational maturation and secretion of thyroglobulin.
|
| |
J Biol Chem, 279,
17085-17089.
|
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|
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Y.Song,
Y.Zhang,
T.Shen,
C.L.Bajaj,
J.A.McCammon,
and
N.A.Baker
(2004).
Finite element solution of the steady-state Smoluchowski equation for rate constant calculations.
|
| |
Biophys J, 86,
2017-2029.
|
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|
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|
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A.Saxena,
J.M.Fedorko,
C.R.Vinayaka,
R.Medhekar,
Z.Radić,
P.Taylor,
O.Lockridge,
and
B.P.Doctor
(2003).
Aromatic amino-acid residues at the active and peripheral anionic sites control the binding of E2020 (Aricept) to cholinesterases.
|
| |
Eur J Biochem, 270,
4447-4458.
|
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|
 |
J.M.Bui,
R.H.Henchman,
and
J.A.McCammon
(2003).
The dynamics of ligand barrier crossing inside the acetylcholinesterase gorge.
|
| |
Biophys J, 85,
2267-2272.
|
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|
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J.Shi,
K.Tai,
J.A.McCammon,
P.Taylor,
and
D.A.Johnson
(2003).
Nanosecond dynamics of the mouse acetylcholinesterase cys69-cys96 omega loop.
|
| |
J Biol Chem, 278,
30905-30911.
|
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|
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T.Zeev-Ben-Mordehai,
I.Silman,
and
J.L.Sussman
(2003).
Acetylcholinesterase in motion: visualizing conformational changes in crystal structures by a morphing procedure.
|
| |
Biopolymers, 68,
395-406.
|
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|
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|
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Y.Bourne,
P.Taylor,
Z.Radić,
and
P.Marchot
(2003).
Structural insights into ligand interactions at the acetylcholinesterase peripheral anionic site.
|
| |
EMBO J, 22,
1.
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PDB codes:
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|
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|
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Y.Nicolet,
O.Lockridge,
P.Masson,
J.C.Fontecilla-Camps,
and
F.Nachon
(2003).
Crystal structure of human butyrylcholinesterase and of its complexes with substrate and products.
|
| |
J Biol Chem, 278,
41141-41147.
|
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|
PDB codes:
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|
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F.Teixeira-Clerc,
A.Ménez,
and
P.Kessler
(2002).
How do short neurotoxins bind to a muscular-type nicotinic acetylcholine receptor?
|
| |
J Biol Chem, 277,
25741-25747.
|
 |
|
|
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|
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H.Dvir,
D.M.Wong,
M.Harel,
X.Barril,
M.Orozco,
F.J.Luque,
D.Muñoz-Torrero,
P.Camps,
T.L.Rosenberry,
I.Silman,
and
J.L.Sussman
(2002).
3D structure of Torpedo californica acetylcholinesterase complexed with huprine X at 2.1 A resolution: kinetic and molecular dynamic correlates.
|
| |
Biochemistry, 41,
2970-2981.
|
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|
PDB code:
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|
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|
 |
J.Shi,
Z.Radic',
and
P.Taylor
(2002).
Inhibitors of different structure induce distinguishing conformations in the omega loop, Cys69-Cys96, of mouse acetylcholinesterase.
|
| |
J Biol Chem, 277,
43301-43308.
|
 |
|
|
|
|
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R.H.Henchman,
and
J.A.McCammon
(2002).
Structural and dynamic properties of water around acetylcholinesterase.
|
| |
Protein Sci, 11,
2080-2090.
|
 |
|
|
|
|
 |
R.H.Henchman,
and
J.A.McCammon
(2002).
Extracting hydration sites around proteins from explicit water simulations.
|
| |
J Comput Chem, 23,
861-869.
|
 |
|
|
|
|
 |
R.H.Henchman,
K.Tai,
T.Shen,
and
J.A.McCammon
(2002).
Properties of water molecules in the active site gorge of acetylcholinesterase from computer simulation.
|
| |
Biophys J, 82,
2671-2682.
|
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|
|
|
|
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J.Shi,
A.E.Boyd,
Z.Radic,
and
P.Taylor
(2001).
Reversibly bound and covalently attached ligands induce conformational changes in the omega loop, Cys69-Cys96, of mouse acetylcholinesterase.
|
| |
J Biol Chem, 276,
42196-42204.
|
 |
|
|
|
|
 |
K.Tai,
T.Shen,
U.Börjesson,
M.Philippopoulos,
and
J.A.McCammon
(2001).
Analysis of a 10-ns molecular dynamics simulation of mouse acetylcholinesterase.
|
| |
Biophys J, 81,
715-724.
|
 |
|
|
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|
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M.Golicnik,
D.Fournier,
and
J.Stojan
(2001).
Interaction of Drosophila acetylcholinesterases with D-tubocurarine: an explanation of the activation by an inhibitor.
|
| |
Biochemistry, 40,
1214-1219.
|
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|
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|
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A.Ricciardi,
M.H.le Du,
M.Khayati,
F.Dajas,
J.C.Boulain,
A.Menez,
and
F.Ducancel
(2000).
Do structural deviations between toxins adopting the same fold reflect functional differences?
|
| |
J Biol Chem, 275,
18302-18310.
|
 |
|
|
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|
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G.Kryger,
M.Harel,
K.Giles,
L.Toker,
B.Velan,
A.Lazar,
C.Kronman,
D.Barak,
N.Ariel,
A.Shafferman,
I.Silman,
and
J.L.Sussman
(2000).
Structures of recombinant native and E202Q mutant human acetylcholinesterase complexed with the snake-venom toxin fasciculin-II.
|
| |
Acta Crystallogr D Biol Crystallogr, 56,
1385-1394.
|
 |
|
PDB codes:
|
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|
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|
 |
H.Osaka,
S.Malany,
B.E.Molles,
S.M.Sine,
and
P.Taylor
(2000).
Pairwise electrostatic interactions between alpha-neurotoxins and gamma, delta, and epsilon subunits of the nicotinic acetylcholine receptor.
|
| |
J Biol Chem, 275,
5478-5484.
|
 |
|
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|
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I.Tsigelny,
I.N.Shindyalov,
P.E.Bourne,
T.C.Südhof,
and
P.Taylor
(2000).
Common EF-hand motifs in cholinesterases and neuroligins suggest a role for Ca2+ binding in cell surface associations.
|
| |
Protein Sci, 9,
180-185.
|
 |
|
|
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|
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L.Wong,
Z.Radic,
R.J.Brüggemann,
N.Hosea,
H.A.Berman,
and
P.Taylor
(2000).
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PDB code:
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PDB codes:
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PDB code:
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PDB codes:
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