 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Structural genomics, signaling protein
|
PDB id
|
|
|
|
1m94
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
* Residue conservation analysis
|
|
|
|
|
|
PDB id:
|
|
|
|
| Name: |
|
Structural genomics, signaling protein
|
|
|
Title:
|
|
Solution structure of the yeast ubiquitin-like modifier protein hub1
|
|
Structure:
|
|
Protein ynr032c-a. Chain: a. Synonym: hub1. Engineered: yes
|
|
Source:
|
|
Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932. Gene: ynr032c-a/hub1. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
NMR struc:
|
|
20 models
|
|
|
Authors:
|
|
T.A.Ramelot,J.R.Cort,A.A.Yee,A.Semesi,A.M.Edwards, C.H.Arrowsmith,M.A.Kennedy,Northeast Structural Genomics Consortium (Nesg)
|
|
Key ref:
|
|
T.A.Ramelot
et al.
(2003).
Solution structure of the yeast ubiquitin-like modifier protein Hub1.
J Struct Funct Genomics,
4,
25-30.
PubMed id:
DOI:
|
|
|
Date:
|
|
|
26-Jul-02
|
Release date:
|
11-Dec-02
|
|
|
|
|
|
|
PROCHECK
|
|
|
|
|
|
Headers
|
|
|
|
References
|
|
|
|
|
|
|
|
|
|
|
|
Q6Q546
(HUB1_YEAST) -
Ubiquitin-like modifier HUB1
|
|
|
|
Seq:
Struc:
|
|
|
|
73 a.a.
73 a.a.
|
|
|
|
|
|
|
|
|
|
|
|
|
Key: |
 |
PfamA domain |
|
|
 |
Secondary structure |
|
 |
CATH domain |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Gene Ontology (GO) functional annotation
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Cellular component
|
mating projection
|
1 term
|
|
|
Biological process
|
cellular morphogenesis during conjugation with cellular fusion
|
3 terms
|
|
|
Biochemical function
|
protein tag
|
2 terms
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
| |
|
DOI no:
|
J Struct Funct Genomics
4:25-30
(2003)
|
|
PubMed id:
|
|
|
|
|
|
| |
|
Solution structure of the yeast ubiquitin-like modifier protein Hub1.
|
|
T.A.Ramelot,
J.R.Cort,
A.A.Yee,
A.Semesi,
A.M.Edwards,
C.H.Arrowsmith,
M.A.Kennedy.
|
|
|
|
|
| |
ABSTRACT
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
 |
 |
|
Literature references that cite this PDB file's key reference
|
|
|
| |
PubMed id
|
|
Reference
|
|
|
|
|
|
B.Fierz,
C.Chatterjee,
R.K.McGinty,
M.Bar-Dagan,
D.P.Raleigh,
and
T.W.Muir
(2011).
Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction.
|
| |
Nat Chem Biol, 7,
113-119.
|
|
|
|
|
|
|
C.Chatterjee,
R.K.McGinty,
B.Fierz,
and
T.W.Muir
(2010).
Disulfide-directed histone ubiquitylation reveals plasticity in hDot1L activation.
|
| |
Nat Chem Biol, 6,
267-269.
|
|
|
|
|
|
|
L.Sanchez-Pulido,
D.Devos,
Z.R.Sung,
and
M.Calonje
(2008).
RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs.
|
| |
BMC Genomics, 9,
308.
|
|
|
|
|
|
|
D.J.Pugh,
E.Ab,
A.Faro,
P.T.Lutya,
E.Hoffmann,
and
D.J.Rees
(2006).
DWNN, a novel ubiquitin-like domain, implicates RBBP6 in mRNA processing and ubiquitin-like pathways.
|
| |
BMC Struct Biol, 6,
1.
|
|
|
PDB code:
|
|
|
|
|
|
|
|
J.Narasimhan,
M.Wang,
Z.Fu,
J.M.Klein,
A.L.Haas,
and
J.J.Kim
(2005).
Crystal structure of the interferon-induced ubiquitin-like protein ISG15.
|
| |
J Biol Chem, 280,
27356-27365.
|
|
|
PDB code:
|
|
|
|
|
|
|
|
R.L.Welchman,
C.Gordon,
and
R.J.Mayer
(2005).
Ubiquitin and ubiquitin-like proteins as multifunctional signals.
|
| |
Nat Rev Mol Cell Biol, 6,
599-609.
|
|
|
|
|
|
|
Y.G.Gao,
A.X.Song,
Y.H.Shi,
Y.G.Chang,
S.X.Liu,
Y.Z.Yu,
X.T.Cao,
D.H.Lin,
and
H.Y.Hu
(2005).
Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells.
|
| |
Protein Sci, 14,
2044-2050.
|
|
|
PDB code:
|
|
|
|
|
|
|
|
C.R.Wilkinson,
G.A.Dittmar,
M.D.Ohi,
P.Uetz,
N.Jones,
and
D.Finley
(2004).
Ubiquitin-like protein Hub1 is required for pre-mRNA splicing and localization of an essential splicing factor in fission yeast.
|
| |
Curr Biol, 14,
2283-2288.
|
|
|
|
|
|
|
C.R.Wilkinson
(2004).
Ubiquitin-like proteins: meet the family.
|
| |
Semin Cell Dev Biol, 15,
199-200.
|
|
|
|
|
|
|
H.Yashiroda,
and
K.Tanaka
(2004).
Hub1 is an essential ubiquitin-like protein without functioning as a typical modifier in fission yeast.
|
| |
Genes Cells, 9,
1189-1197.
|
|
|
|
|
|
The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
|
|
Links
