Literature references that cite this PDB file's
key reference
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PubMed id
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Reference
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E.Geisinger,
E.A.George,
T.W.Muir,
and
R.P.Novick
(2008).
Identification of ligand specificity determinants in AgrC, the Staphylococcus aureus quorum-sensing receptor.
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J Biol Chem, 283,
8930-8938.
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J.M.Lee,
H.Y.Cho,
H.J.Cho,
I.J.Ko,
S.W.Park,
H.S.Baik,
J.H.Oh,
C.Y.Eom,
Y.M.Kim,
B.S.Kang,
and
J.I.Oh
(2008).
O2- and NO-sensing mechanism through the DevSR two-component system in Mycobacterium smegmatis.
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J Bacteriol, 190,
6795-6804.
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PDB codes:
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K.J.Watts,
M.S.Johnson,
and
B.L.Taylor
(2008).
Structure-function relationships in the HAMP and proximal signaling domains of the aerotaxis receptor Aer.
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J Bacteriol, 190,
2118-2127.
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T.Yamashita,
L.Bouzhir-Sima,
J.C.Lambry,
U.Liebl,
and
M.H.Vos
(2008).
Ligand Dynamics and Early Signaling Events in the Heme Domain of the Sensor Protein Dos from Escherichia coli.
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J Biol Chem, 283,
2344-2352.
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S.G.Kruglik,
A.Jasaitis,
K.Hola,
T.Yamashita,
U.Liebl,
J.L.Martin,
and
M.H.Vos
(2007).
Subpicosecond oxygen trapping in the heme pocket of the oxygen sensor FixL observed by time-resolved resonance Raman spectroscopy.
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Proc Natl Acad Sci U S A, 104,
7408-7413.
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S.Singh,
P.Madzelan,
and
R.Banerjee
(2007).
Properties of an unusual heme cofactor in PLP-dependent cystathionine beta-synthase.
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Nat Prod Rep, 24,
631-639.
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H.Li,
J.Igarashi,
J.Jamal,
W.Yang,
and
T.L.Poulos
(2006).
Structural studies of constitutive nitric oxide synthases with diatomic ligands bound.
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J Biol Inorg Chem, 11,
753-768.
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PDB codes:
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K.J.Watts,
K.Sommer,
S.L.Fry,
M.S.Johnson,
and
B.L.Taylor
(2006).
Function of the N-terminal cap of the PAS domain in signaling by the aerotaxis receptor Aer.
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J Bacteriol, 188,
2154-2162.
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M.D.Suits,
N.Jaffer,
and
Z.Jia
(2006).
Structure of the Escherichia coli O157:H7 heme oxygenase ChuS in complex with heme and enzymatic inactivation by mutation of the heme coordinating residue His-193.
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J Biol Chem, 281,
36776-36782.
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PDB code:
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Y.Gao,
S.F.El-Mashtoly,
B.Pal,
T.Hayashi,
K.Harada,
and
T.Kitagawa
(2006).
Pathway of information transmission from heme to protein upon ligand binding/dissociation in myoglobin revealed by UV resonance raman spectroscopy.
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J Biol Chem, 281,
24637-24646.
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Y.Y.Londer,
I.S.Dementieva,
C.A.D'Ausilio,
P.R.Pokkuluri,
and
M.Schiffer
(2006).
Characterization of a c-type heme-containing PAS sensor domain from Geobacter sulfurreducens representing a novel family of periplasmic sensors in Geobacteraceae and other bacteria.
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FEMS Microbiol Lett, 258,
173-181.
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A.Brencic,
and
S.C.Winans
(2005).
Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria.
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Microbiol Mol Biol Rev, 69,
155-194.
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V.Balland,
L.Bouzhir-Sima,
L.Kiger,
M.C.Marden,
M.H.Vos,
U.Liebl,
and
T.A.Mattioli
(2005).
Role of arginine 220 in the oxygen sensor FixL from Bradyrhizobium japonicum.
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J Biol Chem, 280,
15279-15288.
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G.P.Roberts,
H.Youn,
and
R.L.Kerby
(2004).
CO-sensing mechanisms.
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Microbiol Mol Biol Rev, 68,
453-473.
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H.Kurokawa,
D.S.Lee,
M.Watanabe,
I.Sagami,
B.Mikami,
C.S.Raman,
and
T.Shimizu
(2004).
A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor.
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J Biol Chem, 279,
20186-20193.
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PDB codes:
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H.Youn,
R.L.Kerby,
and
G.P.Roberts
(2004).
Changing the ligand specificity of CooA, a highly specific heme-based CO sensor.
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J Biol Chem, 279,
45744-45752.
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M.Watanabe,
H.Kurokawa,
T.Yoshimura-Suzuki,
I.Sagami,
and
T.Shimizu
(2004).
Critical roles of Asp40 at the haem proximal side of haem-regulated phosphodiesterase from Escherichia coli in redox potential, auto-oxidation and catalytic control.
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Eur J Biochem, 271,
3937-3942.
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P.Pellicena,
D.S.Karow,
E.M.Boon,
M.A.Marletta,
and
J.Kuriyan
(2004).
Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases.
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Proc Natl Acad Sci U S A, 101,
12854-12859.
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PDB codes:
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R.Dixon,
and
D.Kahn
(2004).
Genetic regulation of biological nitrogen fixation.
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Nat Rev Microbiol, 2,
621-631.
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S.Taguchi,
T.Matsui,
J.Igarashi,
Y.Sasakura,
Y.Araki,
O.Ito,
S.Sugiyama,
I.Sagami,
and
T.Shimizu
(2004).
Binding of oxygen and carbon monoxide to a heme-regulated phosphodiesterase from Escherichia coli. Kinetics and infrared spectra of the full-length wild-type enzyme, isolated PAS domain, and Met-95 mutants.
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J Biol Chem, 279,
3340-3347.
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C.M.Dunham,
E.M.Dioum,
J.R.Tuckerman,
G.Gonzalez,
W.G.Scott,
and
M.A.Gilles-Gonzalez
(2003).
A distal arginine in oxygen-sensing heme-PAS domains is essential to ligand binding, signal transduction, and structure.
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Biochemistry, 42,
7701-7708.
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PDB code:
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T.Yoshimura,
I.Sagami,
Y.Sasakura,
and
T.Shimizu
(2003).
Relationships between heme incorporation, tetramer formation, and catalysis of a heme-regulated phosphodiesterase from Escherichia coli: a study of deletion and site-directed mutants.
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J Biol Chem, 278,
53105-53111.
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U.Liebl,
L.Bouzhir-Sima,
L.Kiger,
M.C.Marden,
J.C.Lambry,
M.Négrerie,
and
M.H.Vos
(2003).
Ligand binding dynamics to the heme domain of the oxygen sensor Dos from Escherichia coli.
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Biochemistry, 42,
6527-6535.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
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only a partial list as not all journals are covered by
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so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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116 a.a.
