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PDBsum entry 1l7c
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Cell adhesion
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PDB id
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1l7c
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Contents |
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* Residue conservation analysis
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PDB id:
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Cell adhesion
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Title:
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Alpha-catenin fragment, residues 385-651
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Structure:
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Alpha e-catenin. Chain: a, b, c. Fragment: residues 385-651. Synonym: alpha-1 catenin, cadherin-associated protein. Engineered: yes
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Source:
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Mus musculus. House mouse. Organism_taxid: 10090. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.
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Biol. unit:
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Trimer (from
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Resolution:
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2.50Å
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R-factor:
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0.238
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R-free:
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0.273
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Authors:
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S.Pokutta,F.Drees,Y.Takai,W.J.Nelson,W.I.Weis
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Key ref:
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S.Pokutta
et al.
(2002).
Biochemical and structural definition of the l-afadin- and actin-binding sites of alpha-catenin.
J Biol Chem,
277,
18868-18874.
PubMed id:
DOI:
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Date:
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14-Mar-02
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Release date:
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19-Jun-02
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PROCHECK
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Headers
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References
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P26231
(CTNA1_MOUSE) -
Catenin alpha-1 from Mus musculus
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Seq: Struc:
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906 a.a.
240 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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DOI no:
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J Biol Chem
277:18868-18874
(2002)
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PubMed id:
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Biochemical and structural definition of the l-afadin- and actin-binding sites of alpha-catenin.
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S.Pokutta,
F.Drees,
Y.Takai,
W.J.Nelson,
W.I.Weis.
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ABSTRACT
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alpha-Catenin is an integral component of adherens junctions, where it links
cadherins to the actin cytoskeleton. alpha-Catenin is also required for the
colocalization of the nectin/afadin/ponsin adhesion system to adherens
junctions, and it specifically associates with the nectin-binding protein
afadin. A proteolytic fragment of alpha-catenin, residues 385-651, contains the
afadin-binding site. The three-dimensional structure of this fragment comprises
two side-by-side four-helix bundles, both of which are required for afadin
binding. The alpha-catenin fragment 385-651 binds afadin more strongly than the
full-length protein, suggesting that the full-length protein harbors a cryptic
binding site for afadin. Comparison of the alpha-catenin 385-651 structure with
the recently solved structure of the alpha-catenin M-fragment (Yang, J.,
Dokurno, P., Tonks, N. K., and Barford, D. (2001) EMBO J. 20, 3645-3656) reveals
a surprising flexibility in the orientation of the two four-helix bundles.
alpha-Catenin and the actin-binding protein vinculin share sequence and most
likely structural similarity within their actin-binding domains. Despite this
homology, actin binding requires additional sequences adjacent to this region.
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Selected figure(s)
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Figure 2.
Fig. 2. Oligomerization of -catenin
385-651 and its N- and C-terminal subdomains. Fragments at the
indicated concentrations were incubated with a 30-fold excess of
cross-linker. For the two amine-reactive cross-linking reagents
BS3 and DMS with spacer arms of 11.4 and 11.0 Å,
respectively, different cross-linking efficiency was observed.
Higher cross-linking efficiency results are shown here and were
obtained with DMS in the case of -catenin
507-632 and BS3 for -catenin
385-651 and -catenin
385-507. The first lane for the -catenin
385-651 fragment shows a sample in the absence of cross-linker.
Molecular mass markers are indicated on the left of each gel,
and apparent molecular mass of the fragments and cross-linking
products are shown on the right.
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Figure 4.
Fig. 4. Interaction of -catenin (
-cat) with
F-actin. A, schematic representation of -catenin
and the constructs used in the binding assay. Vinculin homology
regions are shown in dark gray. B, binding to F-actin was
examined by cosedimentation. Assuming a binding ratio of
protein:monomeric actin of 1:7, all -catenin
constructs were added in excess. The supernatant (S) containing
the unbound protein and the pellet (P) containing F-actin and
bound protein are shown for each sample. Molecular mass markers
are indicated on the left.
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The above figures are
reprinted
by permission from the ASBMB:
J Biol Chem
(2002,
277,
18868-18874)
copyright 2002.
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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E.S.Rangarajan,
and
T.Izard
(2013).
Dimer asymmetry defines α-catenin interactions.
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Nat Struct Mol Biol,
20,
188-193.
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PDB code:
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R.Desai,
R.Sarpal,
N.Ishiyama,
M.Pellikka,
M.Ikura,
and
U.Tepass
(2013).
Monomeric α-catenin links cadherin to the actin cytoskeleton.
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Nat Cell Biol,
15,
261-273.
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A.Ratheesh,
and
A.S.Yap
(2012).
A bigger picture: classical cadherins and the dynamic actin cytoskeleton.
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Nat Rev Mol Cell Biol,
13,
673-679.
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A.V.Kwiatkowski,
S.L.Maiden,
S.Pokutta,
H.J.Choi,
J.M.Benjamin,
A.M.Lynch,
W.J.Nelson,
W.I.Weis,
and
J.Hardin
(2010).
In vitro and in vivo reconstitution of the cadherin-catenin-actin complex from Caenorhabditis elegans.
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Proc Natl Acad Sci U S A,
107,
14591-14596.
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B.H.Cheng,
Y.Liu,
X.Xuei,
C.P.Liao,
D.Lu,
M.E.Lasbury,
P.J.Durant,
and
C.H.Lee
(2010).
Microarray studies on effects of Pneumocystis carinii infection on global gene expression in alveolar macrophages.
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BMC Microbiol,
10,
103.
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J.M.Benjamin,
A.V.Kwiatkowski,
C.Yang,
F.Korobova,
S.Pokutta,
T.Svitkina,
W.I.Weis,
and
W.J.Nelson
(2010).
AlphaE-catenin regulates actin dynamics independently of cadherin-mediated cell-cell adhesion.
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J Cell Biol,
189,
339-352.
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S.Yonemura,
Y.Wada,
T.Watanabe,
A.Nagafuchi,
and
M.Shibata
(2010).
alpha-Catenin as a tension transducer that induces adherens junction development.
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Nat Cell Biol,
12,
533-542.
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T.J.Harris,
and
U.Tepass
(2010).
Adherens junctions: from molecules to morphogenesis.
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Nat Rev Mol Cell Biol,
11,
502-514.
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A.M.Lynch,
and
J.Hardin
(2009).
The assembly and maintenance of epithelial junctions in C. elegans.
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Front Biosci,
14,
1414-1432.
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D.Kim,
J.Kim,
S.S.Kang,
and
E.J.Jin
(2009).
Transforming growth factor-beta3-induced Smad signaling regulates actin reorganization during chondrogenesis of chick leg bud mesenchymal cells.
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J Cell Biochem,
107,
622-629.
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J.K.Sawyer,
N.J.Harris,
K.C.Slep,
U.Gaul,
and
M.Peifer
(2009).
The Drosophila afadin homologue Canoe regulates linkage of the actin cytoskeleton to adherens junctions during apical constriction.
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J Cell Biol,
186,
57-73.
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L.Shapiro,
and
W.I.Weis
(2009).
Structure and biochemistry of cadherins and catenins.
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Cold Spring Harbor Perspect Biol,
1,
a003053.
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N.Giagtzoglou,
C.V.Ly,
and
H.J.Bellen
(2009).
Cell adhesion, the backbone of the synapse: "vertebrate" and "invertebrate" perspectives.
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Cold Spring Harbor Perspect Biol,
1,
a003079.
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D.D.Mruk,
B.Silvestrini,
and
C.Y.Cheng
(2008).
Anchoring junctions as drug targets: role in contraceptive development.
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Pharmacol Rev,
60,
146-180.
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H.Komura,
H.Ogita,
W.Ikeda,
A.Mizoguchi,
J.Miyoshi,
and
Y.Takai
(2008).
Establishment of cell polarity by afadin during the formation of embryoid bodies.
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Genes Cells,
13,
79-90.
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K.Ebnet
(2008).
Organization of multiprotein complexes at cell-cell junctions.
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Histochem Cell Biol,
130,
1.
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K.Kuramitsu,
W.Ikeda,
N.Inoue,
Y.Tamaru,
and
Y.Takai
(2008).
Novel role of nectin: implication in the co-localization of JAM-A and claudin-1 at the same cell-cell adhesion membrane domain.
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Genes Cells,
13,
797-805.
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M.Hamaguchi,
D.Hamada,
K.N.Suzuki,
I.Sakata,
and
I.Yanagihara
(2008).
Molecular basis of actin reorganization promoted by binding of enterohaemorrhagic Escherichia coli EspB to alpha-catenin.
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FEBS J,
275,
6260-6267.
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S.T.Lim,
K.C.Lim,
R.E.Giuliano,
and
H.J.Federoff
(2008).
Temporal and spatial localization of nectin-1 and l-afadin during synaptogenesis in hippocampal neurons.
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J Comp Neurol,
507,
1228-1244.
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Y.Takai,
J.Miyoshi,
W.Ikeda,
and
H.Ogita
(2008).
Nectins and nectin-like molecules: roles in contact inhibition of cell movement and proliferation.
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Nat Rev Mol Cell Biol,
9,
603-615.
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Y.Takai,
W.Ikeda,
H.Ogita,
and
Y.Rikitake
(2008).
The immunoglobulin-like cell adhesion molecule nectin and its associated protein afadin.
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Annu Rev Cell Dev Biol,
24,
309-342.
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Z.Xie,
H.Photowala,
M.E.Cahill,
D.P.Srivastava,
K.M.Woolfrey,
C.Y.Shum,
R.L.Huganir,
and
P.Penzes
(2008).
Coordination of synaptic adhesion with dendritic spine remodeling by AF-6 and kalirin-7.
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J Neurosci,
28,
6079-6091.
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S.Pokutta,
and
W.I.Weis
(2007).
Structure and mechanism of cadherins and catenins in cell-cell contacts.
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Annu Rev Cell Dev Biol,
23,
237-261.
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S.Yamada,
and
W.J.Nelson
(2007).
Synapses: sites of cell recognition, adhesion, and functional specification.
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Annu Rev Biochem,
76,
267-294.
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M.Perez-Moreno,
and
E.Fuchs
(2006).
Catenins: keeping cells from getting their signals crossed.
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Dev Cell,
11,
601-612.
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X.Chen,
and
B.M.Gumbiner
(2006).
Crosstalk between different adhesion molecules.
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Curr Opin Cell Biol,
18,
572-578.
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F.Drees,
S.Pokutta,
S.Yamada,
W.J.Nelson,
and
W.I.Weis
(2005).
Alpha-catenin is a molecular switch that binds E-cadherin-beta-catenin and regulates actin-filament assembly.
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Cell,
123,
903-915.
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J.Jung-Ching Lin,
E.A.Gustafson-Wagner,
H.W.Sinn,
S.Choi,
S.M.Jaacks,
D.Z.Wang,
S.Evans,
and
J.Li-Chun Lin
(2005).
Structure, Expression, and Function of a Novel Intercalated Disc Protein, Xin.
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J Med Sci,
25,
215-222.
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R.Vogelmann,
and
W.J.Nelson
(2005).
Fractionation of the epithelial apical junctional complex: reassessment of protein distributions in different substructures.
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Mol Biol Cell,
16,
701-716.
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S.Yamada,
S.Pokutta,
F.Drees,
W.I.Weis,
and
W.J.Nelson
(2005).
Deconstructing the cadherin-catenin-actin complex.
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Cell,
123,
889-901.
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A.Kobielak,
and
E.Fuchs
(2004).
Alpha-catenin: at the junction of intercellular adhesion and actin dynamics.
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Nat Rev Mol Cell Biol,
5,
614-625.
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A.Kobielak,
H.A.Pasolli,
and
E.Fuchs
(2004).
Mammalian formin-1 participates in adherens junctions and polymerization of linear actin cables.
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Nat Cell Biol,
6,
21-30.
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C.Bakolitsa,
D.M.Cohen,
L.A.Bankston,
A.A.Bobkov,
G.W.Cadwell,
L.Jennings,
D.R.Critchley,
S.W.Craig,
and
R.C.Liddington
(2004).
Structural basis for vinculin activation at sites of cell adhesion.
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Nature,
430,
583-586.
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PDB code:
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M.K.Siu,
and
C.Y.Cheng
(2004).
Extracellular matrix: recent advances on its role in junction dynamics in the seminiferous epithelium during spermatogenesis.
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Biol Reprod,
71,
375-391.
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N.P.Lee,
and
C.Y.Cheng
(2004).
Adaptors, junction dynamics, and spermatogenesis.
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Biol Reprod,
71,
392-404.
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F.Struyf,
W.M.Martinez,
and
P.G.Spear
(2002).
Mutations in the N-terminal domains of nectin-1 and nectin-2 reveal differences in requirements for entry of various alphaherpesviruses and for nectin-nectin interactions.
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J Virol,
76,
12940-12950.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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