Literature references that cite this PDB file's
key reference
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PubMed id
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Reference
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H.Hemmi,
A.Kuno,
S.Ito,
R.Suzuki,
T.Hasegawa,
and
J.Hirabayashi
(2009).
NMR studies on the interaction of sugars with the C-terminal domain of an R-type lectin from the earthworm Lumbricus terrestris.
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FEBS J, 276,
2095-2105.
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L.Maveyraud,
H.Niwa,
V.Guillet,
D.I.Svergun,
P.V.Konarev,
R.A.Palmer,
W.J.Peumans,
P.Rougé,
E.J.Van Damme,
C.D.Reynolds,
and
L.Mourey
(2009).
Structural basis for sugar recognition, including the Tn carcinoma antigen, by the lectin SNA-II from Sambucus nigra.
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Proteins, 75,
89.
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PDB codes:
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M.L.DeMarco,
and
R.J.Woods
(2009).
Atomic-resolution conformational analysis of the GM3 ganglioside in a lipid bilayer and its implications for ganglioside-protein recognition at membrane surfaces.
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Glycobiology, 19,
344-355.
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A.Bagaria,
K.Surendranath,
U.A.Ramagopal,
S.Ramakumar,
and
A.A.Karande
(2006).
Structure-function analysis and insights into the reduced toxicity of Abrus precatorius agglutinin I in relation to abrin.
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J Biol Chem, 281,
34465-34474.
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PDB code:
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B.Pils,
R.R.Copley,
and
J.Schultz
(2005).
Variation in structural location and amino acid conservation of functional sites in protein domain families.
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BMC Bioinformatics, 6,
210.
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V.Mishra,
S.Bilgrami,
R.S.Sharma,
P.Kaur,
S.Yadav,
R.Krauspenhaar,
C.Betzel,
W.Voelter,
C.R.Babu,
and
T.P.Singh
(2005).
Crystal structure of himalayan mistletoe ribosome-inactivating protein reveals the presence of a natural inhibitor and a new functionally active sugar-binding site.
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J Biol Chem, 280,
20712-20721.
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PDB code:
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A.Chambery,
A.Di Maro,
M.M.Monti,
F.Stirpe,
and
A.Parente
(2004).
Volkensin from Adenia volkensii Harms (kilyambiti plant), a type 2 ribosome-inactivating protein.
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Eur J Biochem, 271,
108-117.
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R.Suzuki,
Z.Fujimoto,
A.Kuno,
J.Hirabayashi,
K.Kasai,
and
T.Hasegawa
(2004).
Crystallization and preliminary X-ray crystallographic studies of the C-terminal domain of galactose-binding lectin EW29 from the earthworm Lumbricus terrestris.
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Acta Crystallogr D Biol Crystallogr, 60,
1895-1896.
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T.Uchida,
T.Yamasaki,
S.Eto,
H.Sugawara,
G.Kurisu,
A.Nakagawa,
M.Kusunoki,
and
T.Hatakeyama
(2004).
Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate Cucumaria echinata: implications of domain structure for its membrane pore-formation mechanism.
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J Biol Chem, 279,
37133-37141.
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PDB code:
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V.Mishra,
A.S.Ethayathulla,
R.S.Sharma,
S.Yadav,
R.Krauspenhaar,
C.Betzel,
C.R.Babu,
and
T.P.Singh
(2004).
Structure of a novel ribosome-inactivating protein from a hemi-parasitic plant inhabiting the northwestern Himalayas.
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Acta Crystallogr D Biol Crystallogr, 60,
2295-2304.
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PDB code:
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J.Morlon-Guyot,
M.Helmy,
S.Lombard-Frasca,
D.Pignol,
G.Piéroni,
and
B.Beaumelle
(2003).
Identification of the ricin lipase site and implication in cytotoxicity.
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J Biol Chem, 278,
17006-17011.
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R.P.Kruger,
H.C.Winter,
N.Simonson-Leff,
J.A.Stuckey,
I.J.Goldstein,
and
J.E.Dixon
(2002).
Cloning, expression, and characterization of the Galalpha 1,3Gal high affinity lectin from the mushroom Marasmius oreades.
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J Biol Chem, 277,
15002-15005.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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252 a.a.
263 a.a.
.
subdomains of ebulin (top) and ricin (bottom). Galactose is bound to ebulin. Lactose is bound to ricin. In both pictures, the galactose moiety is numbered at significant carbons of the sugar ring. All contacts with lactose in ricin are made with the galactose moiety. The glucose moiety (GLC) extends into the solvent. The GLC extension (
-1,4 linkage) from the C1 hydroxyl of the galactose moiety in ricin is not possible for the C1 hydroxyl of galactose in ebulin, because of steric interference with 254 N.
