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Chromosomal protein PDB id
1hst
Jmol
Contents
Protein chains
74 a.a. *
* Residue conservation analysis
PDB id:
1hst
Name: Chromosomal protein
Title: Crystal structure of globular domain of histone h5 and its implications for nucleosome binding
Structure: Histone h5. Chain: a, b. Engineered: yes
Source: Gallus gallus. Chicken. Organism_taxid: 9031. Cell_line: h5
Resolution:
2.60Å     R-factor:   0.270    
Authors: V.Ramakrishnan,J.T.Finch,V.Graziano,P.L.Lee,R.M.Sweet
Key ref: V.Ramakrishnan et al. (1993). Crystal structure of globular domain of histone H5 and its implications for nucleosome binding. Nature, 362, 219-223. PubMed id: 8384699 DOI: 10.1038/362219a0
Date:
30-Mar-93     Release date:   31-Oct-93    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P02259  (H5_CHICK) -  Histone H5
Seq:
Struc: 		190 a.a.
74 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     nucleus   2 terms 
  Biological process     nucleosome assembly   1 term 
  Biochemical function     DNA binding     1 term  

 

 
DOI no: 10.1038/362219a0 Nature 362:219-223 (1993)
PubMed id: 8384699  
 
 
Crystal structure of globular domain of histone H5 and its implications for nucleosome binding.
V.Ramakrishnan, J.T.Finch, V.Graziano, P.L.Lee, R.M.Sweet.
 
  ABSTRACT  
 
The structure of GH5, the globular domain of the linker histone H5, has been solved to 2.5 A resolution by multiwavelength anomalous diffraction on crystals of the selenomethionyl protein. The structure shows a striking similarity to the DNA-binding domain of the catabolite gene activator protein CAP, thereby providing a possible model for the binding of GH5 to DNA.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21629560 R.Dootz, A.C.Toma, and T.Pfohl (2011).
Structural and dynamic properties of linker histone H1 binding to DNA.
  Biomicrofluidics, 5, 24104.  
  20927327 B.S.Freedman, K.E.Miller, and R.Heald (2010).
Xenopus egg extracts increase dynamics of histone H1 on sperm chromatin.
  PLoS One, 5, 0.  
  20944208 D.Das, N.V.Grishin, A.Kumar, D.Carlton, C.Bakolitsa, M.D.Miller, P.Abdubek, T.Astakhova, H.L.Axelrod, P.Burra, C.Chen, H.J.Chiu, M.Chiu, T.Clayton, M.C.Deller, L.Duan, K.Ellrott, D.Ernst, C.L.Farr, J.Feuerhelm, A.Grzechnik, S.K.Grzechnik, J.C.Grant, G.W.Han, L.Jaroszewski, K.K.Jin, H.A.Johnson, H.E.Klock, M.W.Knuth, P.Kozbial, S.S.Krishna, D.Marciano, D.McMullan, A.T.Morse, E.Nigoghossian, A.Nopakun, L.Okach, S.Oommachen, J.Paulsen, C.Puckett, R.Reyes, C.L.Rife, N.Sefcovic, H.J.Tien, C.B.Trame, H.van den Bedem, D.Weekes, T.Wooten, Q.Xu, K.O.Hodgson, J.Wooley, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, and I.A.Wilson (2010).
The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 66, 1174-1181.
PDB code: 3dee
20156997 H.Hashimoto, Y.Takami, E.Sonoda, T.Iwasaki, H.Iwano, M.Tachibana, S.Takeda, T.Nakayama, H.Kimura, and Y.Shinkai (2010).
Histone H1 null vertebrate cells exhibit altered nucleosome architecture.
  Nucleic Acids Res, 38, 3533-3545.  
20716550 I.C.Perera, and A.Grove (2010).
Molecular mechanisms of ligand-mediated attenuation of DNA binding by MarR family transcriptional regulators.
  J Mol Cell Biol, 2, 243-254.  
20042602 K.Hayashihara, S.Uchiyama, S.Shimamoto, S.Kobayashi, M.Tomschik, H.Wakamatsu, D.No, H.Sugahara, N.Hori, M.Noda, T.Ohkubo, J.Zlatanova, S.Matsunaga, and K.Fukui (2010).
The middle region of an HP1-binding protein, HP1-BP74, associates with linker DNA at the entry/exit site of nucleosomal DNA.
  J Biol Chem, 285, 6498-6507.
PDB code: 2rqp
20201649 M.A.du Penhoat, A.Eschenbrenner, F.Abel, A.Boissiere, J.M.Guigner, A.Chetioui, M.F.Politis, A.Touati, E.Sage, T.J.Jenner, D.L.Stevens, and M.A.Hill (2010).
Double-strand break induction and repair in V79-4 hamster cells: the role of core ionisations, as probed by ultrasoft X-rays.
  Int J Radiat Biol, 86, 205-219.  
20438368 M.Piscopo, M.Conte, F.Di Paola, S.Conforti, G.Rana, L.De Petrocellis, L.Fucci, and G.Geraci (2010).
Relevance of arginines in the mode of binding of H1 histones to DNA.
  DNA Cell Biol, 29, 339-347.  
20309017 S.J.McBryant, X.Lu, and J.C.Hansen (2010).
Multifunctionality of the linker histones: an emerging role for protein-protein interactions.
  Cell Res, 20, 519-528.  
19897491 S.Kohler, and L.A.Cirillo (2010).
Stable chromatin binding prevents FoxA acetylation, preserving FoxA chromatin remodeling.
  J Biol Chem, 285, 464-472.  
20351097 T.Arnold, K.Zeth, and D.Linke (2010).
Omp85 from the thermophilic cyanobacterium Thermosynechococcus elongatus differs from proteobacterial Omp85 in structure and domain composition.
  J Biol Chem, 285, 18003-18015.
PDB code: 2x8x
20215433 T.J.Hsieh, T.J.Yen, T.S.Lin, H.T.Chang, S.Y.Huang, C.H.Hsu, L.Farh, and N.L.Chan (2010).
Twisting of the DNA-binding surface by a beta-strand-bearing proline modulates DNA gyrase activity.
  Nucleic Acids Res, 38, 4173-4181.
PDB code: 3l6v
19229296 A.A.Aksyuk, P.G.Leiman, L.P.Kurochkina, M.M.Shneider, V.A.Kostyuchenko, V.V.Mesyanzhinov, and M.G.Rossmann (2009).
The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteria.
  EMBO J, 28, 821-829.
PDB codes: 3fo8 3foa 3foh 3foi
19523898 A.A.Aksyuk, P.G.Leiman, M.M.Shneider, V.V.Mesyanzhinov, and M.G.Rossmann (2009).
The structure of gene product 6 of bacteriophage T4, the hinge-pin of the baseplate.
  Structure, 17, 800-808.
PDB codes: 3h2t 3h3w 3h3y
19604473 C.Oubridge, D.A.Krummel, A.K.Leung, J.Li, and K.Nagai (2009).
Interpreting a low resolution map of human U1 snRNP using anomalous scatterers.
  Structure, 17, 930-938.  
19444313 C.Smits, M.Chechik, O.V.Kovalevskiy, M.B.Shevtsov, A.W.Foster, J.C.Alonso, and A.A.Antson (2009).
Structural basis for the nuclease activity of a bacteriophage large terminase.
  EMBO Rep, 10, 592-598.
PDB codes: 2wbn 2wc9
19490123 C.Wood, A.Snijders, J.Williamson, C.Reynolds, J.Baldwin, and M.Dickman (2009).
Post-translational modifications of the linker histone variants and their association with cell mechanisms.
  FEBS J, 276, 3685-3697.  
19282449 F.Cui, and V.B.Zhurkin (2009).
Distinctive sequence patterns in metazoan and yeast nucleosomes: implications for linker histone binding to AT-rich and methylated DNA.
  Nucleic Acids Res, 37, 2818-2829.  
19298048 G.Arya, and T.Schlick (2009).
A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments.
  J Phys Chem A, 113, 4045-4059.  
19708021 J.M.Eirín-López, and J.Ausió (2009).
Origin and evolution of chromosomal sperm proteins.
  Bioessays, 31, 1062-1070.  
19604474 N.Huang, J.De Ingeniis, L.Galeazzi, C.Mancini, Y.D.Korostelev, A.B.Rakhmaninova, M.S.Gelfand, D.A.Rodionov, N.Raffaelli, and H.Zhang (2009).
Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism.
  Structure, 17, 939-951.
PDB code: 3gz8
19234534 N.Raghuram, G.Carrero, J.Th'ng, and M.J.Hendzel (2009).
Molecular dynamics of histone H1.
  Biochem Cell Biol, 87, 189-206.  
19767891 R.González-Romero, J.Ausió, J.Méndez, and J.M.Eirín-López (2009).
Histone genes of the razor clam Solen marginatus unveil new aspects of linker histone evolution in protostomes.
  Genome, 52, 597-607.  
19184528 R.Janowski, S.Panjikar, A.N.Eddine, S.H.Kaufmann, and M.S.Weiss (2009).
Structural analysis reveals DNA binding properties of Rv2827c, a hypothetical protein from Mycobacterium tuberculosis.
  J Struct Funct Genomics, 10, 137-150.
PDB code: 1zel
19509310 T.Kumarevel, T.Tanaka, T.Umehara, and S.Yokoyama (2009).
ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
  Nucleic Acids Res, 37, 4723-4735.
PDB codes: 3gez 3gf2 3gfi 3gfj 3gfl 3gfm
19339686 T.Sekiya, U.M.Muthurajan, K.Luger, A.V.Tulin, and K.S.Zaret (2009).
Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA.
  Genes Dev, 23, 804-809.  
18687885 A.Levy, M.Eyal, G.Hershkovits, M.Salmon-Divon, M.Klutstein, and D.J.Katcoff (2008).
Yeast linker histone Hho1p is required for efficient RNA polymerase I processivity and transcriptional silencing at the ribosomal DNA.
  Proc Natl Acad Sci U S A, 105, 11703-11708.  
18798528 D.Z.Staynov (2008).
The controversial 30 nm chromatin fibre.
  Bioessays, 30, 1003-1009.  
18076033 H.Itou, M.Yao, N.Watanabe, and I.Tanaka (2008).
Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3.
  Proteins, 70, 1631-1634.
PDB code: 1uly
18224409 H.Yoshida, and I.Kitabayashi (2008).
Chromatin regulation by AML1 complex.
  Int J Hematol, 87, 19-24.  
18468442 J.Zlatanova, C.Seebart, and M.Tomschik (2008).
The linker-protein network: control of nucleosomal DNA accessibility.
  Trends Biochem Sci, 33, 247-253.  
18698803 K.L.Rose, A.Li, I.Zalenskaya, Y.Zhang, E.Unni, K.C.Hodgson, Y.Yu, J.Shabanowitz, M.L.Meistrich, D.F.Hunt, and J.Ausió (2008).
C-terminal phosphorylation of murine testis-specific histone H1t in elongating spermatids.
  J Proteome Res, 7, 4070-4078.  
19028990 K.S.Zaret, J.Watts, J.Xu, E.Wandzioch, S.T.Smale, and T.Sekiya (2008).
Pioneer factors, genetic competence, and inductive signaling: programming liver and pancreas progenitors from the endoderm.
  Cold Spring Harb Symp Quant Biol, 73, 119-126.  
18212006 N.Kepper, D.Foethke, R.Stehr, G.Wedemann, and K.Rippe (2008).
Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation.
  Biophys J, 95, 3692-3705.  
18443735 R.González-Romero, J.Ausió, J.Méndez, and J.M.Eirín-López (2008).
Early evolution of histone genes: prevalence of an 'orphon' H1 lineage in protostomes and birth-and-death process in the H2A family.
  J Mol Evol, 66, 505-518.  
18456819 R.M.Finn, K.Browne, K.C.Hodgson, and J.Ausió (2008).
sNASP, a histone H1-specific eukaryotic chaperone dimer that facilitates chromatin assembly.
  Biophys J, 95, 1314-1325.  
18372120 S.Bhan, W.May, S.L.Warren, and D.B.Sittman (2008).
Global gene expression analysis reveals specific and redundant roles for H1 variants, H1c and H1(0), in gene expression regulation.
  Gene, 414, 10-18.  
17962805 V.K.Maier, M.Chioda, D.Rhodes, and P.B.Becker (2008).
ACF catalyses chromatosome movements in chromatin fibres.
  EMBO J, 27, 817-826.  
18274740 V.Laux, P.Callow, D.I.Svergun, P.A.Timmins, V.T.Forsyth, and M.Haertlein (2008).
Selective deuteration of tryptophan and methionine residues in maltose binding protein: a model system for neutron scattering.
  Eur Biophys J, 37, 815-822.  
  17909298 C.Dahl, A.Schulte, and D.H.Shin (2007).
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of DsrEFH from Allochromatium vinosum.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 63, 890-892.  
17849006 H.Wong, J.M.Victor, and J.Mozziconacci (2007).
An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length.
  PLoS ONE, 2, e877.  
17709379 I.Cuesta, K.S.Zaret, and P.Santisteban (2007).
The forkhead factor FoxE1 binds to the thyroperoxidase promoter during thyroid cell differentiation and modifies compacted chromatin structure.
  Mol Cell Biol, 27, 7302-7314.  
17283050 J.A.Sherriff, N.A.Kent, and J.Mellor (2007).
The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor to repress transcription of the B-type cyclin gene CLB2.
  Mol Cell Biol, 27, 2848-2860.  
17355871 K.A.Satyshur, G.A.Worzalla, L.S.Meyer, E.K.Heiniger, K.G.Aukema, A.M.Misic, and K.T.Forest (2007).
Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.
  Structure, 15, 363-376.
PDB codes: 2ewv 2eww 2eyu 2gsz
17923482 M.Hatta, and L.A.Cirillo (2007).
Chromatin opening and stable perturbation of core histone:DNA contacts by FoxO1.
  J Biol Chem, 282, 35583-35593.  
17189474 R.G.Garces, W.Gillon, and E.F.Pai (2007).
Atomic model of human Rcd-1 reveals an armadillo-like-repeat protein with in vitro nucleic acid binding properties.
  Protein Sci, 16, 176-188.
PDB code: 2fv2
  17565181 T.Matsui, S.Nishimura, K.Kijima, Y.Kawasaki, F.Tashiro, and S.Miura (2007).
Crystallization and preliminary X-ray diffraction data of the rat histone H1(0) globular domain.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 63, 403-405.  
16738128 A.Flaus, D.M.Martin, G.J.Barton, and T.Owen-Hughes (2006).
Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.
  Nucleic Acids Res, 34, 2887-2905.  
16462749 D.T.Brown, T.Izard, and T.Misteli (2006).
Mapping the interaction surface of linker histone H1(0) with the nucleosome of native chromatin in vivo.
  Nat Struct Mol Biol, 13, 250-255.  
16301309 J.C.Hansen, X.Lu, E.D.Ross, and R.W.Woody (2006).
Intrinsic protein disorder, amino acid composition, and histone terminal domains.
  J Biol Chem, 281, 1853-1856.  
16243843 J.M.Eirín-López, L.J.Frehlick, and J.Ausió (2006).
Protamines, in the footsteps of linker histone evolution.
  J Biol Chem, 281, 1-4.  
16717183 L.Fan, and V.A.Roberts (2006).
Complex of linker histone H5 with the nucleosome and its implications for chromatin packing.
  Proc Natl Acad Sci U S A, 103, 8384-8389.  
16948161 L.Y.Lin, C.L.Ching, K.H.Chin, S.H.Chou, and N.L.Chan (2006).
Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles.
  Proteins, 65, 783-786.
PDB code: 2gsc
16472024 M.Bhasin, E.L.Reinherz, and P.A.Reche (2006).
Recognition and classification of histones using support vector machine.
  J Comput Biol, 13, 102-112.  
16965539 N.Saperas, M.Chiva, M.T.Casas, J.L.Campos, J.M.Eirín-López, L.J.Frehlick, C.Prieto, J.A.Subirana, and J.Ausió (2006).
A unique vertebrate histone H1-related protamine-like protein results in an unusual sperm chromatin organization.
  FEBS J, 273, 4548-4561.  
16714106 P.J.Robinson, and D.Rhodes (2006).
Structure of the '30 nm' chromatin fibre: a key role for the linker histone.
  Curr Opin Struct Biol, 16, 336-343.  
16617109 P.J.Robinson, L.Fairall, V.A.Huynh, and D.Rhodes (2006).
EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.
  Proc Natl Acad Sci U S A, 103, 6506-6511.  
16061804 A.B.Datta, S.Panjikar, M.S.Weiss, P.Chakrabarti, and P.Parrack (2005).
Structure of lambda CII: implications for recognition of direct-repeat DNA by an unusual tetrameric organization.
  Proc Natl Acad Sci U S A, 102, 11242-11247.
PDB code: 1xwr
15878991 A.Fokine, P.G.Leiman, M.M.Shneider, B.Ahvazi, K.M.Boeshans, A.C.Steven, L.W.Black, V.V.Mesyanzhinov, and M.G.Rossmann (2005).
Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.
  Proc Natl Acad Sci U S A, 102, 7163-7168.
PDB codes: 1yue 1z1u
16299514 C.Qian, Q.Zhang, S.Li, L.Zeng, M.J.Walsh, and M.M.Zhou (2005).
Structure and chromosomal DNA binding of the SWIRM domain.
  Nat Struct Mol Biol, 12, 1078-1085.
PDB codes: 2aqe 2aqf
15716277 G.Martic, Z.Karetsou, K.Kefala, A.S.Politou, C.R.Clapier, T.Straub, and T.Papamarcaki (2005).
Parathymosin affects the binding of linker histone H1 to nucleosomes and remodels chromatin structure.
  J Biol Chem, 280, 16143-16150.  
15710904 I.Martianov, S.Brancorsini, R.Catena, A.Gansmuller, N.Kotaja, M.Parvinen, P.Sassone-Corsi, and I.Davidson (2005).
Polar nuclear localization of H1T2, a histone H1 variant, required for spermatid elongation and DNA condensation during spermiogenesis.
  Proc Natl Acad Sci U S A, 102, 2808-2813.  
16082565 J.M.Eirín-López, M.F.Ruiz, A.M.González-Tizón, A.Martínez, J.Ausió, L.Sánchez, and J.Méndez (2005).
Common evolutionary origin and birth-and-death process in the replication-independent histone H1 isoforms from vertebrate and invertebrate genomes.
  J Mol Evol, 61, 398-407.  
15911621 J.P.Th'ng, R.Sung, M.Ye, and M.J.Hendzel (2005).
H1 family histones in the nucleus. Control of binding and localization by the C-terminal domain.
  J Biol Chem, 280, 27809-27814.  
16292304 J.R.Wagner, J.S.Brunzelle, K.T.Forest, and R.D.Vierstra (2005).
A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.
  Nature, 438, 325-331.
PDB code: 1ztu
  16511064 J.Vévodová, R.M.Graham, E.Raux, M.J.Warren, and K.S.Wilson (2005).
Crystallization and preliminary structure analysis of CobE, an essential protein of cobalamin (vitamin B12) biosynthesis.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 61, 442-444.  
15808743 L.Aravind, V.Anantharaman, S.Balaji, M.M.Babu, and L.M.Iyer (2005).
The many faces of the helix-turn-helix domain: transcription regulation and beyond.
  FEMS Microbiol Rev, 29, 231-262.  
15546875 L.J.Jason, R.M.Finn, G.Lindsey, and J.Ausió (2005).
Histone H2A ubiquitination does not preclude histone H1 binding, but it facilitates its association with the nucleosome.
  J Biol Chem, 280, 4975-4982.  
15944219 M.Becker, A.Becker, F.Miyara, Z.Han, M.Kihara, D.T.Brown, G.L.Hager, K.Latham, E.Y.Adashi, and T.Misteli (2005).
Differential in vivo binding dynamics of somatic and oocyte-specific linker histones in oocytes and during ES cell nuclear transfer.
  Mol Biol Cell, 16, 3887-3895.  
16209951 M.Hong, M.Fuangthong, J.D.Helmann, and R.G.Brennan (2005).
Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family.
  Mol Cell, 20, 131-141.
PDB codes: 1z91 1z9c
16006241 N.Happel, E.Schulze, and D.Doenecke (2005).
Characterisation of human histone H1x.
  Biol Chem, 386, 541-551.  
16203725 R.Montes de Oca, K.K.Lee, and K.L.Wilson (2005).
Binding of barrier to autointegration factor (BAF) to histone H3 and selected linker histones including H1.1.
  J Biol Chem, 280, 42252-42262.  
16314321 T.C.Galvão, and J.O.Thomas (2005).
Structure-specific binding of MeCP2 to four-way junction DNA through its methyl CpG-binding domain.
  Nucleic Acids Res, 33, 6603-6609.  
16162504 Y.Chen, S.J.Shiue, C.W.Huang, J.L.Chang, Y.L.Chien, N.T.Hu, and N.L.Chan (2005).
Structure and function of the XpsE N-terminal domain, an essential component of the Xanthomonas campestris type II secretion system.
  J Biol Chem, 280, 42356-42363.
PDB codes: 2d27 2d28
15255891 A.C.Harvey, and J.A.Downs (2004).
What functions do linker histones provide?
  Mol Microbiol, 53, 771-775.  
15562002 A.Roque, M.Orrego, I.Ponte, and P.Suau (2004).
The preferential binding of histone H1 to DNA scaffold-associated regions is determined by its C-terminal domain.
  Nucleic Acids Res, 32, 6111-6119.  
14763973 H.Park, J.L.Hilsenbeck, H.J.Kim, W.A.Shuttleworth, Y.H.Park, J.N.Evans, and C.Kang (2004).
Structural studies of Streptococcus pneumoniae EPSP synthase in unliganded state, tetrahedral intermediate-bound state and S3P-GLP-bound state.
  Mol Microbiol, 51, 963-971.
PDB codes: 1rf4 1rf5 1rf6
15024099 J.D.Lewis, N.Saperas, Y.Song, M.J.Zamora, M.Chiva, and J.Ausió (2004).
Histone H1 and the origin of protamines.
  Proc Natl Acad Sci U S A, 101, 4148-4152.  
15317581 J.Govin, C.Caron, C.Lestrat, S.Rousseaux, and S.Khochbin (2004).
The role of histones in chromatin remodelling during mammalian spermiogenesis.
  Eur J Biochem, 271, 3459-3469.  
15103158 K.T.Forest, K.A.Satyshur, G.A.Worzalla, J.K.Hansen, and T.J.Herdendorf (2004).
The pilus-retraction protein PilT: ultrastructure of the biological assembly.
  Acta Crystallogr D Biol Crystallogr, 60, 978-982.  
15192207 L.Cirillo, and K.Zaret (2004).
Developmental biology. A linker histone restricts muscle development.
  Science, 304, 1607-1609.  
  14725764 M.Harkiolaki, E.J.Dodson, V.Bernier-Villamor, J.P.Turkenburg, D.González-Pacanowska, and K.S.Wilson (2004).
The crystal structure of Trypanosoma cruzi dUTPase reveals a novel dUTP/dUDP binding fold.
  Structure, 12, 41-53.
PDB codes: 1ogk 1ogl
14985337 M.J.Hendzel, M.A.Lever, E.Crawford, and J.P.Th'ng (2004).
The C-terminal domain is the primary determinant of histone H1 binding to chromatin in vivo.
  J Biol Chem, 279, 20028-20034.  
15071498 R.G.Garces, N.Wu, W.Gillon, and E.F.Pai (2004).
Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC.
  EMBO J, 23, 1688-1698.
PDB codes: 1r5p 1r5q
15466871 T.J.Hsieh, L.Farh, W.M.Huang, and N.L.Chan (2004).
Structure of the topoisomerase IV C-terminal domain: a broken beta-propeller implies a role as geometry facilitator in catalysis.
  J Biol Chem, 279, 55587-55593.
PDB code: 1wp5
15704013 W.A.McLaughlin, D.W.Kulp, J.de la Cruz, X.J.Lu, C.L.Lawson, and H.M.Berman (2004).
A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction.
  J Struct Funct Genomics, 5, 255-265.  
14960713 X.J.Yang (2004).
The diverse superfamily of lysine acetyltransferases and their roles in leukemia and other diseases.
  Nucleic Acids Res, 32, 959-976.  
12697747 C.Zheng, and J.J.Hayes (2003).
Intra- and inter-nucleosomal protein-DNA interactions of the core histone tail domains in a model system.
  J Biol Chem, 278, 24217-24224.  
12897856 D.T.Brown (2003).
Histone H1 and the dynamic regulation of chromatin function.
  Biochem Cell Biol, 81, 221-227.  
12591941 K.Kamada, R.G.Roeder, and S.K.Burley (2003).
Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF.
  Proc Natl Acad Sci U S A, 100, 2296-2299.
PDB code: 1j2x
14654695 K.Ono, O.Kusano, S.Shimotakahara, M.Shimizu, T.Yamazaki, and H.Shindo (2003).
The linker histone homolog Hho1p from Saccharomyces cerevisiae represents a winged helix-turn-helix fold as determined by NMR spectroscopy.
  Nucleic Acids Res, 31, 7199-7207.
PDB code: 1uhm
12773374 M.Harkiolaki, M.Lewitzky, R.J.Gilbert, E.Y.Jones, R.P.Bourette, G.Mouchiroud, H.Sondermann, I.Moarefi, and S.M.Feller (2003).
Structural basis for SH3 domain-mediated high-affinity binding between Mona/Gads and SLP-76.
  EMBO J, 22, 2571-2582.
PDB code: 1oeb
12853645 M.M.Bharath, N.R.Chandra, and M.R.Rao (2003).
Molecular modeling of the chromatosome particle.
  Nucleic Acids Res, 31, 4264-4274.  
  12962631 N.Mizuno, G.Voordouw, K.Miki, A.Sarai, and Y.Higuchi (2003).
Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif.
  Structure, 11, 1133-1140.
PDB code: 1ucr
12920187 W.Yan, L.Ma, K.H.Burns, and M.M.Matzuk (2003).
HILS1 is a spermatid-specific linker histone H1-like protein implicated in chromatin remodeling during mammalian spermiogenesis.
  Proc Natl Acad Sci U S A, 100, 10546-10551.  
12897851 X.Lu, and J.C.Hansen (2003).
Revisiting the structure and functions of the linker histone C-terminal tail domain.
  Biochem Cell Biol, 81, 173-176.  
12191478 A.B.Hickman, D.R.Ronning, R.M.Kotin, and F.Dyda (2002).
Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep.
  Mol Cell, 10, 327-337.
PDB code: 1m55
12198304 B.Kauffmann, F.Favier, A.Olry, S.Boschi-Muller, P.Carpentier, G.Branlant, and A.Aubry (2002).
Crystallization and preliminary X-ray diffraction studies of the peptide methionine sulfoxide reductase B domain of Neisseria meningitidis PILB.
  Acta Crystallogr D Biol Crystallogr, 58, 1467-1469.  
12150903 E.M.Bradbury (2002).
Chromatin structure and dynamics: state-of-the-art.
  Mol Cell, 10, 13-19.  
12438377 F.T.Papageorgiou, and K.P.Soteriadou (2002).
Expression of a novel Leishmania gene encoding a histone H1-like protein in Leishmania major modulates parasite infectivity in vitro.
  Infect Immun, 70, 6976-6986.  
11988475 J.C.Hansen (2002).
Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions.
  Annu Rev Biophys Biomol Struct, 31, 361-392.  
  12123288 J.D.Lewis, and J.Ausió (2002).
Protamine-like proteins: evidence for a novel chromatin structure.
  Biochem Cell Biol, 80, 353-361.  
11839496 J.L.Huffman, and R.G.Brennan (2002).
Prokaryotic transcription regulators: more than just the helix-turn-helix motif.
  Curr Opin Struct Biol, 12, 98.  
11864602 L.A.Cirillo, F.R.Lin, I.Cuesta, D.Friedman, M.Jarnik, and K.S.Zaret (2002).
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4.
  Mol Cell, 9, 279-289.  
11835281 L.J.Jason, S.C.Moore, J.D.Lewis, G.Lindsey, and J.Ausió (2002).
Histone ubiquitination: a tagging tail unfolds?
  Bioessays, 24, 166-174.  
12379842 M.Kirsten Frank, F.Dyda, A.Dobrodumov, and A.M.Gronenborn (2002).
Core mutations switch monomeric protein GB1 into an intertwined tetramer.
  Nat Struct Biol, 9, 877-885.
PDB codes: 1mpe 1mvk
12211017 M.M.Bharath, N.R.Chandra, and M.R.Rao (2002).
Prediction of an HMG-box fold in the C-terminal domain of histone H1: insights into its role in DNA condensation.
  Proteins, 49, 71-81.  
12037320 M.Nardini, S.Spanò, C.Cericola, A.Pesce, G.Damonte, A.Luini, D.Corda, and M.Bolognesi (2002).
Crystallization and preliminary X-ray diffraction analysis of brefeldin A-ADP ribosylated substrate (BARS).
  Acta Crystallogr D Biol Crystallogr, 58, 1068-1070.  
12110674 N.Adachi, A.Kimura, and M.Horikoshi (2002).
A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
  J Biol Chem, 277, 35688-35695.  
12119037 N.M.Mamoon, Y.Song, and S.E.Wellman (2002).
Histone h1(0) and its carboxyl-terminal domain bind in the major groove of DNA.
  Biochemistry, 41, 9222-9228.  
12093724 P.N.Brown, C.P.Hill, and D.F.Blair (2002).
Crystal structure of the middle and C-terminal domains of the flagellar rotor protein FliG.
  EMBO J, 21, 3225-3234.
PDB code: 1lkv
12402362 P.P.Liu, Y.C.Chen, C.Li, Y.H.Hsieh, S.W.Chen, S.H.Chen, W.Y.Jeng, and W.J.Chuang (2002).
Solution structure of the DNA-binding domain of interleukin enhancer binding factor 1 (FOXK1a).
  Proteins, 49, 543-553.
PDB code: 1jxs
11790831 R.Vila, I.Ponte, M.A.Jiménez, M.Rico, and P.Suau (2002).
An inducible helix-Gly-Gly-helix motif in the N-terminal domain of histone H1e: a CD and NMR study.
  Protein Sci, 11, 214-220.  
12389038 S.A.Jacobs, J.M.Harp, S.Devarakonda, Y.Kim, F.Rastinejad, and S.Khorasanizadeh (2002).
The active site of the SET domain is constructed on a knot.
  Nat Struct Biol, 9, 833-838.
PDB codes: 1mt6 1muf
11969410 Z.A.Wood, L.B.Poole, R.R.Hantgan, and P.A.Karplus (2002).
Dimers to doughnuts: redox-sensitive oligomerization of 2-cysteine peroxiredoxins.
  Biochemistry, 41, 5493-5504.
PDB code: 1kyg
11173495 A.V.Coelho, S.Macedo, P.M.Matias, A.W.Thompson, J.LeGall, and M.A.Carrondo (2001).
Structure determination of bacterioferritin from Desulfovibrio desulfuricans by the MAD method at the Fe K-edge.
  Acta Crystallogr D Biol Crystallogr, 57, 326-329.  
  11467745 D.A.Hill (2001).
Influence of linker histone H1 on chromatin remodeling.
  Biochem Cell Biol, 79, 317-324.  
12762005 D.E.Brodersen, A.P.Carter, W.M.Clemons, R.J.Morgan-Warren, F.V.Murphy, J.M.Ogle, M.J.Tarry, B.T.Wimberly, and V.Ramakrishnan (2001).
Atomic structures of the 30S subunit and its complexes with ligands and antibiotics.
  Cold Spring Harb Symp Quant Biol, 66, 17-32.  
  11435116 G.Michel, L.Chantalat, E.Duee, T.Barbeyron, B.Henrissat, B.Kloareg, and O.Dideberg (2001).
The kappa-carrageenase of P. carrageenovora features a tunnel-shaped active site: a novel insight in the evolution of Clan-B glycoside hydrolases.
  Structure, 9, 513-525.
PDB code: 1dyp
11742995 I.Kitabayashi, Y.Aikawa, L.A.Nguyen, A.Yokoyama, and M.Ohki (2001).
Activation of AML1-mediated transcription by MOZ and inhibition by the MOZ-CBP fusion protein.
  EMBO J, 20, 7184-7196.  
11447106 J.Yang, P.Dokurno, N.K.Tonks, and D.Barford (2001).
Crystal structure of the M-fragment of alpha-catenin: implications for modulation of cell adhesion.
  EMBO J, 20, 3645-3656.
PDB code: 1h6g
11248041 K.Kamada, J.De Angelis, R.G.Roeder, and S.K.Burley (2001).
Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF.
  Proc Natl Acad Sci U S A, 98, 3115-3120.
PDB code: 1i27
11689424 M.A.Mathews, H.L.Schubert, F.G.Whitby, K.J.Alexander, K.Schadick, H.A.Bergonia, J.D.Phillips, and C.P.Hill (2001).
Crystal structure of human uroporphyrinogen III synthase.
  EMBO J, 20, 5832-5839.
PDB code: 1jr2
11713304 P.Lefevre, J.Kontaraki, and C.Bonifer (2001).
Identification of factors mediating the developmental regulation of the early acting -3.9 kb chicken lysozyme enhancer element.
  Nucleic Acids Res, 29, 4551-4560.  
11584004 R.Vila, I.Ponte, M.Collado, J.L.Arrondo, M.A.Jiménez, M.Rico, and P.Suau (2001).
DNA-induced alpha-helical structure in the NH2-terminal domain of histone H1.
  J Biol Chem, 276, 46429-46435.  
11327854 T.E.Benson, M.S.Harris, G.H.Choi, J.I.Cialdella, J.T.Herberg, J.P.Martin, and E.T.Baldwin (2001).
A structural variation for MurB: X-ray crystal structure of Staphylococcus aureus UDP-N-acetylenolpyruvylglucosamine reductase (MurB).
  Biochemistry, 40, 2340-2350.
PDB code: 1hsk
11524677 T.Schwartz, J.Behlke, K.Lowenhaupt, U.Heinemann, and A.Rich (2001).
Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins.
  Nat Struct Biol, 8, 761-765.
PDB code: 1j75
11300769 Z.A.Wood, L.B.Poole, and P.A.Karplus (2001).
Structure of intact AhpF reveals a mirrored thioredoxin-like active site and implies large domain rotations during catalysis.
  Biochemistry, 40, 3900-3911.
PDB code: 1hyu
10911996 A.B.Hickman, Y.Li, S.V.Mathew, E.W.May, N.L.Craig, and F.Dyda (2000).
Unexpected structural diversity in DNA recombination: the restriction endonuclease connection.
  Mol Cell, 5, 1025-1034.
PDB code: 1f1z
11081631 G.Mer, A.Bochkarev, R.Gupta, E.Bochkareva, L.Frappier, C.J.Ingles, A.M.Edwards, and W.J.Chazin (2000).
Structural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA.
  Cell, 103, 449-456.
PDB code: 1dpu
10676813 H.Song, P.Mugnier, A.K.Das, H.M.Webb, D.R.Evans, M.F.Tuite, B.A.Hemmings, and D.Barford (2000).
The crystal structure of human eukaryotic release factor eRF1--mechanism of stop codon recognition and peptidyl-tRNA hydrolysis.
  Cell, 100, 311-321.
PDB code: 1dt9
10606635 J.E.Wibley, A.E.Pegg, and P.C.Moody (2000).
Crystal structure of the human O(6)-alkylguanine-DNA alkyltransferase.
  Nucleic Acids Res, 28, 393-401.
PDB code: 1qnt
10594009 J.L.Barra, L.Rhounim, J.L.Rossignol, and G.Faugeron (2000).
Histone H1 is dispensable for methylation-associated gene silencing in Ascobolus immersus and essential for long life span.
  Mol Cell Biol, 20, 61-69.  
10679470 K.S.Gajiwala, and S.K.Burley (2000).
Winged helix proteins.
  Curr Opin Struct Biol, 10, 110-116.  
10716934 M.Okuda, Y.Watanabe, H.Okamura, F.Hanaoka, Y.Ohkuma, and Y.Nishimura (2000).
Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
  EMBO J, 19, 1346-1356.
PDB codes: 1d8j 1d8k
10930842 N.Wu, D.Christendat, A.Dharamsi, and E.F.Pai (2000).
Purification, crystallization and preliminary X-ray study of orotidine 5'-monophosphate decarboxylase.
  Acta Crystallogr D Biol Crystallogr, 56, 912-914.  
10841783 R.E.Campbell, S.C.Mosimann, I.van De Rijn, M.E.Tanner, and N.C.Strynadka (2000).
The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation.
  Biochemistry, 39, 7012-7023.
PDB codes: 1dli 1dlj
  10794405 R.Vila, I.Ponte, M.A.Jiménez, M.Rico, and P.Suau (2000).
A helix-turn motif in the C-terminal domain of histone H1.
  Protein Sci, 9, 627-636.  
10983971 Y.Dou, and M.A.Gorovsky (2000).
Phosphorylation of linker histone H1 regulates gene expression in vivo by creating a charge patch.
  Mol Cell, 6, 225-231.  
10024876 A.B.Hickman, D.C.Klein, and F.Dyda (1999).
Melatonin biosynthesis: the structure of serotonin N-acetyltransferase at 2.5 A resolution suggests a catalytic mechanism.
  Mol Cell, 3, 23-32.
PDB code: 1b6b
10087913 A.Travers (1999).
The location of the linker histone on the nucleosome.
  Trends Biochem Sci, 24, 4-7.  
10338213 B.T.Wimberly, R.Guymon, J.P.McCutcheon, S.W.White, and V.Ramakrishnan (1999).
A detailed view of a ribosomal active site: the structure of the L11-RNA complex.
  Cell, 97, 491-502.
PDB code: 1mms
10581235 F.V.Murphy, R.M.Sweet, and M.E.Churchill (1999).
The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition.
  EMBO J, 18, 6610-6618.
PDB code: 1qrv
  10574791 I.I.Mathews, T.J.Kappock, J.Stubbe, and S.E.Ealick (1999).
Crystal structure of Escherichia coli PurE, an unusual mutase in the purine biosynthetic pathway.
  Structure, 7, 1395-1406.
PDB codes: 1d7a 1qcz
10545119 J.Iwahara, and R.T.Clubb (1999).
Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID).
  EMBO J, 18, 6084-6094.
PDB code: 1c20
10231530 J.J.Barycki, L.K.O'Brien, J.M.Bratt, R.Zhang, R.Sanishvili, A.W.Strauss, and L.J.Banaszak (1999).
Biochemical characterization and crystal structure determination of human heart short chain L-3-hydroxyacyl-CoA dehydrogenase provide insights into catalytic mechanism.
  Biochemistry, 38, 5786-5798.
PDB codes: 1f18 1f1a 2hdh 3had
10635321 L.A.Cirillo, and K.S.Zaret (1999).
An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA.
  Mol Cell, 4, 961-969.  
9889202 M.Schade, C.J.Turner, K.Lowenhaupt, A.Rich, and A.Herbert (1999).
Structure-function analysis of the Z-DNA-binding domain Zalpha of dsRNA adenosine deaminase type I reveals similarity to the (alpha + beta) family of helix-turn-helix proteins.
  EMBO J, 18, 470-479.  
  10090723 N.Zheng, E.Fraenkel, C.O.Pabo, and N.P.Pavletich (1999).
Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP.
  Genes Dev, 13, 666-674.
PDB code: 1cf7
  10368280 P.M.Matias, R.Coelho, I.A.Pereira, A.V.Coelho, A.W.Thompson, L.C.Sieker, J.L.Gall, and M.A.Carrondo (1999).
The primary and three-dimensional structures of a nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774 reveal a new member of the Hmc family.
  Structure, 7, 119-130.
PDB code: 19hc
10364558 T.Schwartz, M.A.Rould, K.Lowenhaupt, A.Herbert, and A.Rich (1999).
Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA.
  Science, 284, 1841-1845.
PDB code: 1qbj
9497335 C.E.Watson, and P.L.Davies (1998).
The high molecular weight chromatin proteins of winter flounder sperm are related to an extreme histone H1 variant.
  J Biol Chem, 273, 6157-6162.  
9422788 C.Gorka, M.P.Brocard, S.Curtet, and S.Khochbin (1998).
Differential recognition of histone H10 by monoclonal antibodies during cell differentiation and the arrest of cell proliferation.
  J Biol Chem, 273, 1208-1215.  
9689043 C.M.Groft, S.N.Uljon, R.Wang, and M.H.Werner (1998).
Structural homology between the Rap30 DNA-binding domain and linker histone H5: implications for preinitiation complex assembly.
  Proc Natl Acad Sci U S A, 95, 9117-9122.
PDB codes: 1bby 2bby
  9420326 E.Y.Shim, C.Woodcock, and K.S.Zaret (1998).
Nucleosome positioning by the winged helix transcription factor HNF3.
  Genes Dev, 12, 5.  
9730820 G.J.Carter, and K.van Holde (1998).
Self-association of linker histone H5 and of its globular domain: evidence for specific self-contacts.
  Biochemistry, 37, 12477-12488.  
9516420 H.G.Patterton, C.C.Landel, D.Landsman, C.L.Peterson, and R.T.Simpson (1998).
The biochemical and phenotypic characterization of Hho1p, the putative linker histone H1 of Saccharomyces cerevisiae.
  J Biol Chem, 273, 7268-7276.  
9761882 J.Bella, and M.G.Rossmann (1998).
A general phasing algorithm for multiple MAD and MIR data.
  Acta Crystallogr D Biol Crystallogr, 54, 159-174.  
  9562558 J.Furui, K.Uegaki, T.Yamazaki, M.Shirakawa, M.B.Swindells, H.Harada, T.Taniguchi, and Y.Kyogoku (1998).
Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
  Structure, 6, 491-500.
PDB codes: 1irf 1irg
9653108 J.M.Berger, D.Fass, J.C.Wang, and S.C.Harrison (1998).
Structural similarities between topoisomerases that cleave one or both DNA strands.
  Proc Natl Acad Sci U S A, 95, 7876-7881.  
9748476 J.M.Berger (1998).
Structure of DNA topoisomerases.
  Biochim Biophys Acta, 1400, 3.  
9565750 J.P.Schneider, A.Lombardi, and W.F.DeGrado (1998).
Analysis and design of three-stranded coiled coils and three-helix bundles.
  Fold Des, 3, R29-R40.  
9427737 J.Wang, K.Lim, A.Smolyar, M.Teng, J.Liu, A.G.Tse, J.Liu, R.E.Hussey, Y.Chishti, C.T.Thomson, R.M.Sweet, S.G.Nathenson, H.C.Chang, J.C.Sacchettini, and E.L.Reinherz (1998).
Atomic structure of an alphabeta T cell receptor (TCR) heterodimer in complex with an anti-TCR fab fragment derived from a mitogenic antibody.
  EMBO J, 17, 10-26.
PDB code: 1nfd
9646870 J.Widom (1998).
Structure, dynamics, and function of chromatin in vitro.
  Annu Rev Biophys Biomol Struct, 27, 285-327.  
9723008 J.Zlatanova, and K.van Holde (1998).
Linker histones versus HMG1/2: a struggle for dominance?
  Bioessays, 20, 584-588.  
  9794819 K.Zaret (1998).
Early liver differentiation: genetic potentiation and multilevel growth control.
  Curr Opin Genet Dev, 8, 526-531.  
9427758 L.A.Cirillo, C.E.McPherson, P.Bossard, K.Stevens, S.Cherian, E.Y.Shim, K.L.Clark, S.K.Burley, and K.S.Zaret (1998).
Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome.
  EMBO J, 17, 244-254.  
9846868 M.Vignali, and J.L.Workman (1998).
Location and function of linker histones.
  Nat Struct Biol, 5, 1025-1028.  
9727486 R.N.Dutnall, S.T.Tafrov, R.Sternglanz, and V.Ramakrishnan (1998).
Structure of the histone acetyltransferase Hat1: a paradigm for the GCN5-related N-acetyltransferase superfamily.
  Cell, 94, 427-438.
PDB code: 1bob
10384268 S.K.Burley (1998).
X-ray crystallographic studies of eukaryotic transcription factors.
  Cold Spring Harb Symp Quant Biol, 63, 33-40.  
  9632749 T.Sera, and A.P.Wolffe (1998).
Role of histone H1 as an architectural determinant of chromatin structure and as a specific repressor of transcription on Xenopus oocyte 5S rRNA genes.
  Mol Cell Biol, 18, 3668-3680.  
9705517 W.An, K.van Holde, and J.Zlatanova (1998).
Linker histone protection of chromatosomes reconstituted on 5S rDNA from Xenopus borealis:a reinvestigation.
  Nucleic Acids Res, 26, 4042-4046.  
9520377 W.An, S.H.Leuba, K.van Holde, and J.Zlatanova (1998).
Linker histone protects linker DNA on only one side of the core particle and in a sequence-dependent manner.
  Proc Natl Acad Sci U S A, 95, 3396-3401.  
  9562554 W.M.Clemons, C.Davies, S.W.White, and V.Ramakrishnan (1998).
Conformational variability of the N-terminal helix in the structure of ribosomal protein S15.
  Structure, 6, 429-438.
PDB code: 1a32
9734357 Y.Mo, B.Vaessen, K.Johnston, and R.Marmorstein (1998).
Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins.
  Mol Cell, 2, 201-212.
PDB codes: 1bc7 1bc8
9237992 A.Herbert, J.Alfken, Y.G.Kim, I.S.Mian, K.Nishikura, and A.Rich (1997).
A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase.
  Proc Natl Acad Sci U S A, 94, 8421-8426.  
9235002 A.L.Lomize, and H.I.Mosberg (1997).
Thermodynamic model of secondary structure for alpha-helical peptides and proteins.
  Biopolymers, 42, 239-269.  
9080775 A.P.Wolffe, S.Khochbin, and S.Dimitrov (1997).
What do linker histones do in chromatin?
  Bioessays, 19, 249-255.  
  9570139 A.P.Wolffe (1997).
Histone H1.
  Int J Biochem Cell Biol, 29, 1463-1466.  
9138593 A.Prunell (1997).
Linker histones' role revisited.
  Biophys J, 72, 983-984.  
9782778 A.Travers, and H.Drew (1997).
DNA recognition and nucleosome organization.
  Biopolymers, 44, 423-433.  
9188741 A.V.Efimov (1997).
Structural trees for protein superfamilies.
  Proteins, 28, 241-260.  
  9032246 B.Mandl, W.F.Brandt, G.Superti-Furga, P.G.Graninger, M.L.Birnstiel, and M.Busslinger (1997).
The five cleavage-stage (CS) histones of the sea urchin are encoded by a maternally expressed family of replacement histone genes: functional equivalence of the CS H1 and frog H1M (B4) proteins.
  Mol Cell Biol, 17, 1189-1200.  
  9331418 B.T.Wimberly, S.W.White, and V.Ramakrishnan (1997).
The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids.
  Structure, 5, 1187-1198.
PDB code: 1rss
9254714 D.A.Hill, and R.Reeves (1997).
Competition between HMG-I(Y), HMG-1 and histone H1 on four-way junction DNA.
  Nucleic Acids Res, 25, 3523-3531.  
8990153 D.B.Nikolov, and S.K.Burley (1997).
RNA polymerase II transcription initiation: a structural view.
  Proc Natl Acad Sci U S A, 94, 15-22.  
9396808 D.T.Brown, A.Gunjan, B.T.Alexander, and D.B.Sittman (1997).
Differential effect of H1 variant overproduction on gene expression is due to differences in the central globular domain.
  Nucleic Acids Res, 25, 5003-5009.  
  9016718 E.Martínez-Hackert, and A.M.Stock (1997).
The DNA-binding domain of OmpR: crystal structures of a winged helix transcription factor.
  Structure, 5, 109-124.
PDB code: 1opc
9241421 G.Patikoglou, and S.K.Burley (1997).
Eukaryotic transcription factor-DNA complexes.
  Annu Rev Biophys Biomol Struct, 26, 289-325.  
8989318 H.Kondo, A.Nakagawa, J.Nishihira, Y.Nishimura, T.Mizuno, and I.Tanaka (1997).
Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site.
  Nat Struct Biol, 4, 28-31.
PDB code: 1odd
9218784 J.A.Bertrand, G.Auger, E.Fanchon, L.Martin, D.Blanot, J.van Heijenoort, and O.Dideberg (1997).
Crystal structure of UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase from Escherichia coli.
  EMBO J, 16, 3416-3425.
PDB codes: 1e0d 1uag
9033593 J.G.Omichinski, P.V.Pedone, G.Felsenfeld, A.M.Gronenborn, and G.M.Clore (1997).
The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode.
  Nat Struct Biol, 4, 122-132.
PDB codes: 1yui 1yuj
9384590 J.Wong, Q.Li, B.Z.Levi, Y.B.Shi, and A.P.Wolffe (1997).
Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor.
  EMBO J, 16, 7130-7145.  
9391045 J.Yaneva, S.H.Leuba, K.van Holde, and J.Zlatanova (1997).
The major chromatin protein histone H1 binds preferentially to cis-platinum-damaged DNA.
  Proc Natl Acad Sci U S A, 94, 13448-13451.  
  9016723 K.S.Thorn, H.E.Christensen, R.Shigeta, D.Huddler, L.Shalaby, U.Lindberg, N.H.Chua, and C.E.Schutt (1997).
The crystal structure of a major allergen from plants.
  Structure, 5, 19-32.
PDB codes: 1a0k 1plm 3nul
9013616 L.J.Juan, R.T.Utley, M.Vignali, L.Bohm, and J.L.Workman (1997).
H1-mediated repression of transcription factor binding to a stably positioned nucleosome.
  J Biol Chem, 272, 3635-3640.  
9138584 M.Ivanchenko, J.Zlatanova, and K.van Holde (1997).
Histone H1 preferentially binds to superhelical DNA molecules of higher compaction.
  Biophys J, 72, 1388-1395.  
9334747 M.Sunnerhagen, M.Nilges, G.Otting, and J.Carey (1997).
Solution structure of the DNA-binding domain and model for the complex of multifunctional hexameric arginine repressor with DNA.
  Nat Struct Biol, 4, 819-826.
PDB code: 1aoy
  9083114 R.M.Xu, C.Koch, Y.Liu, J.R.Horton, D.Knapp, K.Nasmyth, and X.Cheng (1997).
Crystal structure of the DNA-binding domain of Mbp1, a transcription factor important in cell-cycle control of DNA synthesis.
  Structure, 5, 349-358.
PDB code: 1bm8
9228952 S.F.Bellon, K.K.Rodgers, D.G.Schatz, J.E.Coleman, and T.A.Steitz (1997).
Crystal structure of the RAG1 dimerization domain reveals multiple zinc-binding motifs including a novel zinc binuclear cluster.
  Nat Struct Biol, 4, 586-591.
PDB code: 1rmd
9032065 S.K.Burley, X.Xie, K.L.Clark, and F.Shu (1997).
Histone-like transcription factors in eukaryotes.
  Curr Opin Struct Biol, 7, 94.  
9136120 T.Itoh, J.Ausio, and C.Katagiri (1997).
Histone H1 variants as sperm-specific nuclear proteins of Rana catesbeiana, and their role in maintaining a unique condensed state of sperm chromatin.
  Mol Reprod Dev, 47, 181-190.  
9324306 T.Meergans, W.Albig, and D.Doenecke (1997).
Varied expression patterns of human H1 histone genes in different cell lines.
  DNA Cell Biol, 16, 1041-1049.  
9241414 V.Ramakrishnan (1997).
Histone structure and the organization of the nucleosome.
  Annu Rev Biophys Biomol Struct, 26, 83.  
9207015 W.Gong, M.O'Gara, R.M.Blumenthal, and X.Cheng (1997).
Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment.
  Nucleic Acids Res, 25, 2702-2715.
PDB code: 1boo
9334238 Y.Mishima, H.Kaizu, and R.Kominami (1997).
Pairing of DNA fragments containing (GGA:TCC)n repeats and promotion by high mobility group protein 1 and histone H1.
  J Biol Chem, 272, 26578-26584.  
  8851972 A.P.Wolffe, and D.Pruss (1996).
Deviant nucleosomes: the functional specialization of chromatin.
  Trends Genet, 12, 58-62.  
  8978696 B.Le Douarin, A.L.Nielsen, J.M.Garnier, H.Ichinose, F.Jeanmougin, R.Losson, and P.Chambon (1996).
A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors.
  EMBO J, 15, 6701-6715.  
  8805509 C.Davies, S.W.White, and V.Ramakrishnan (1996).
The crystal structure of ribosomal protein L14 reveals an important organizational component of the translational apparatus.
  Structure, 4, 55-66.
PDB code: 1whi
9022689 F.A.Goytisolo, L.C.Packman, and J.O.Thomas (1996).
Photoaffinity labelling of a DNA-binding site on the globular domain of histone H5.
  Eur J Biochem, 242, 619-626.  
  8670844 F.A.Goytisolo, S.E.Gerchman, X.Yu, C.Rees, V.Graziano, V.Ramakrishnan, and J.O.Thomas (1996).
Identification of two DNA-binding sites on the globular domain of histone H5.
  EMBO J, 15, 3421-3429.  
8824211 J.J.Hayes, R.Kaplan, K.Ura, D.Pruss, and A.Wolffe (1996).
A putative DNA binding surface in the globular domain of a linker histone is not essential for specific binding to the nucleosome.
  J Biol Chem, 271, 25817-25822.  
8867811 J.M.vanWert, S.A.Wolfe, and S.R.Grimes (1996).
Binding of nuclear proteins to a conserved histone H1t promoter element suggests an important role in testis-specific transcription.
  J Cell Biochem, 60, 348-362.  
8954154 K.Kondili, O.Tsolas, and T.Papamarcaki (1996).
Selective interaction between parathymosin and histone H1.
  Eur J Biochem, 242, 67-74.  
  8670817 K.S.Pai, D.E.Bussiere, F.Wang, C.A.Hutchison, S.W.White, and D.Bastia (1996).
The structure and function of the replication terminator protein of Bacillus subtilis: identification of the 'winged helix' DNA-binding domain.
  EMBO J, 15, 3164-3173.  
  8890169 K.Ura, K.Nightingale, and A.P.Wolffe (1996).
Differential association of HMG1 and linker histones B4 and H1 with dinucleosomal DNA: structural transitions and transcriptional repression.
  EMBO J, 15, 4959-4969.  
8831284 K.van Holde, and J.Zlatanova (1996).
Chromatin architectural proteins and transcription factors: a structural connection.
  Bioessays, 18, 697-700.  
  8598195 L.W.Donaldson, J.M.Petersen, B.J.Graves, and L.P.McIntosh (1996).
Solution structure of the ETS domain from murine Ets-1: a winged helix-turn-helix DNA binding motif.
  EMBO J, 15, 125-134.
PDB codes: 1etc 1etd
  8612595 M.McArthur, and J.O.Thomas (1996).
A preference of histone H1 for methylated DNA.
  EMBO J, 15, 1705-1714.  
  8805566 N.O.Concha, B.A.Rasmussen, K.Bush, and O.Herzberg (1996).
Crystal structure of the wide-spectrum binuclear zinc beta-lactamase from Bacteroides fragilis.
  Structure, 4, 823-836.
PDB code: 1znb
8605176 P.Dumoulin, R.H.Ebright, R.Knegtel, R.Kaptein, M.Granger-Schnarr, and M.Schnarr (1996).
Structure of the LexA repressor-DNA complex probed by affinity cleavage and affinity photo-cross-linking.
  Biochemistry, 35, 4279-4286.  
8837516 S.E.Wellman (1996).
Carboxyl-terminal peptides from histone H1 variants: DNA binding characteristics and solution conformation.
  Biopolymers, 39, 491-501.  
8599760 S.Grzesiek, A.Bax, G.M.Clore, A.M.Gronenborn, J.S.Hu, J.Kaufman, I.Palmer, S.J.Stahl, and P.T.Wingfield (1996).
The solution structure of HIV-1 Nef reveals an unexpected fold and permits delineation of the binding surface for the SH3 domain of Hck tyrosine protein kinase.
  Nat Struct Biol, 3, 340-345.
PDB code: 1nef
8982450 W.M.Huang (1996).
Bacterial diversity based on type II DNA topoisomerase genes.
  Annu Rev Genet, 30, 79.  
8634242 Y.H.Lee, C.Ogata, J.W.Pflugrath, D.G.Levitt, R.Sarma, L.J.Banaszak, and S.J.Pilkis (1996).
Crystal structure of the rat liver fructose-2,6-bisphosphatase based on selenomethionine multiwavelength anomalous dispersion phases.
  Biochemistry, 35, 6010-6019.
PDB code: 1fbt
8521837 A.Bandiera, U.A.Patel, G.Manfioletti, A.Rustighi, V.Giancotti, and C.Crane-Robinson (1995).
A precursor-product relationship in molluscan sperm proteins from Ensis minor.
  Eur J Biochem, 233, 744-749.  
  7853503 A.Kiehl, and D.I.Dorsky (1995).
Bipartite DNA-binding region of the Epstein-Barr virus BMRF1 product essential for DNA polymerase accessory function.
  J Virol, 69, 1669-1677.