PDBsum entry: 1fm5

Immune system

PDB id: 1fm5

Contents

Protein chain

118 a.a. *

Waters ×128

* Residue conservation analysis

PDB id:

1fm5

Name:

Immune system

Title:

Crystal structure of human cd69

Structure:

Early activation antigen cd69. Chain: a. Fragment: c-type lectin-like domain. Synonym: early t-cell activation antigen p6, gp32/28, leu- 23, mlr-3, ea1, bl-ac/p26, activation inducer molecule, aim. Engineered: yes

Source:

Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562.

Biol. unit:

Dimer (from PDB file)

Resolution:

2.27Å R-factor: 0.243 R-free: 0.299

Authors:

K.Natarajan,M.W.Sawicki,D.H.Margulies,R.A.Mariuzza

Key ref:

K.Natarajan et al. (2000). Crystal structure of human CD69: a C-type lectin-like activation marker of hematopoietic cells. Biochemistry, 39, 14779-14786. PubMed id: 11101293 DOI: 10.1021/bi0018180

Date:

16-Aug-00 Release date: 18-Dec-00

Protein chain

Q07108  (CD69_HUMAN) -  Early activation antigen CD69

Seq: 199 a.a.

Struc: 118 a.a.*

* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Gene Ontology (GO) functional annotation 

• Cellular component: membrane (4 terms)
• Biological process: cellular response to drug (1 term)
• Biochemical function: binding (3 terms)

DOI no: 10.1021/bi0018180

Biochemistry 39:14779-14786 (2000)

PubMed id: 11101293

Crystal structure of human CD69: a C-type lectin-like activation marker of hematopoietic cells.

K.Natarajan, M.W.Sawicki, D.H.Margulies, R.A.Mariuzza.

ABSTRACT

CD69 is a widely expressed type II transmembrane glycoprotein related to the C-type animal lectins that exhibits regulated expression on a variety of cells of the hematopoietic lineage, including neutrophils, monocytes, T cells, B cells, natural killer (NK) cells, and platelets. Activation of T lymphocytes results in the induced expression of CD69 at the cell surface. In addition, cross-linking of CD69 by specific antibodies leads to the activation of cells bearing this receptor and to the induction of effector functions. However, the physiological ligand of CD69 is unknown. We report here the X-ray crystal structure of the extracellular C-type lectin-like domain (CTLD) of human CD69 at 2.27 A resolution. Recombinant CD69 was expressed in bacterial inclusion bodies and folded in vitro. The protein, which exists as a disulfide-linked homodimer on the cell surface, crystallizes as a symmetrical dimer, similar to those formed by the related NK cell receptors Ly49A and CD94. The structure reveals conservation of the C-type lectin-like fold, including preservation of the two alpha-helical regions found in Ly49A and mannose-binding protein (MBP). However, only one of the nine residues coordinated to Ca(2+) in MBP is conserved in CD69 and no bound Ca(2+) is evident in the crystal structure. Surprisingly, electron density suggestive of a puckered six-membered ring was discovered at a site structurally analogous to the ligand-binding sites of MBP and Ly49A. This sugar-like density may represent, or mimic, part of the natural ligand recognized by CD69.