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PDBsum entry 1emw

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protein links
Ribosome PDB id
1emw
Jmol
Contents
Protein chain
88 a.a. *
* Residue conservation analysis
PDB id:
1emw
Name: Ribosome
Title: Solution structure of the ribosomal protein s16 from thermus thermophilus
Structure: S16 ribosomal protein. Chain: a. Engineered: yes
Source: Thermus thermophilus. Organism_taxid: 274. Expressed in: escherichia coli. Expression_system_taxid: 562.
NMR struc: 47 models
Authors: P.Allard,A.V.Rak,B.T.Wimberly,W.M.Clemons Jr.,A.Kalinin, M.Helgstrand,M.B.Garber,V.Ramakrishnan,T.Hard
Key ref:
P.Allard et al. (2000). Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit. Structure, 8, 875-882. PubMed id: 10997906 DOI: 10.1016/S0969-2126(00)00177-5
Date:
20-Mar-00     Release date:   09-Aug-00    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P80379  (RS16_THETH) -  30S ribosomal protein S16
Seq:
Struc:
91 a.a.
88 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     intracellular   2 terms 
  Biological process     translation   1 term 
  Biochemical function     structural constituent of ribosome     1 term  

 

 
DOI no: 10.1016/S0969-2126(00)00177-5 Structure 8:875-882 (2000)
PubMed id: 10997906  
 
 
Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.
P.Allard, A.V.Rak, B.T.Wimberly, W.M.Clemons, A.Kalinin, M.Helgstrand, M.B.Garber, V.Ramakrishnan, T.Härd.
 
  ABSTRACT  
 
BACKGROUND: X-ray crystallography has recently yielded much-improved electron-density maps of the bacterial ribosome and its two subunits and many structural details of bacterial ribosome subunits are now being resolved. One approach to complement the structures and elucidate the details of rRNA and protein packing is to determine structures of individual protein components and model these into existing intermediate resolution electron density. RESULTS: We have determined the solution structure of the ribosomal protein S16 from Thermus thermophilus. S16 is a mixed alpha/beta protein with a novel folding scaffold based on a five-stranded antiparallel/parallel beta sheet. Three large loops, which are partially disordered, extend from the sheet and two alpha helices are packed against its concave surface. Calculations of surface electrostatic potentials show a large continuous area of positive electrostatic potential and smaller areas of negative potential. S16 was modeled into a 5.5 A electron-density map of the T. thermophilus 30S ribosomal subunit. CONCLUSIONS: The location and orientation of S16 in a narrow crevice formed by helix 21 and several other unassigned rRNA helices is consistent with electron density corresponding to the shape of S16, hydroxyl radical protection data, and the electrostatic surface potential of S16. Two protein neighbors to S16 are S4 and S20, which facilitate binding of S16 to the 30S subunit. Overall, this work exemplifies the benefits of combining high-resolution nuclear magnetic resonance (NMR) structures of individual components with low-resolution X-ray maps to elucidate structures of large complexes.
 
  Selected figure(s)  
 
Figure 6.
Figure 6. Representation of the electrostatic surface of S16 from T. thermophilus. Red and blue colors represent negative and positive electrostatic potential, respectively. The left view is in the same orientation as in Figure 4, whereas the right view is rotated 180 around the vertical axis. The figure was made using the program MOLMOL [33].
 
  The above figure is reprinted by permission from Cell Press: Structure (2000, 8, 875-882) copyright 2000.  
  Figure was selected by an automated process.