 |
PDBsum entry 1ehc
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Signal transduction
|
PDB id
|
|
|
|
1ehc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
|
|
|
* Residue conservation analysis
|
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
| |
|
DOI no:
|
J Biol Chem
272:11850-11855
(1997)
|
|
PubMed id:
|
|
|
|
|
| |
|
Uncoupled phosphorylation and activation in bacterial chemotaxis. The 2.3 A structure of an aspartate to lysine mutant at position 13 of CheY.
|
|
M.Jiang,
R.B.Bourret,
M.I.Simon,
K.Volz.
|
|
|
|
| |
ABSTRACT
|
|
|
| |
|
An aspartate to lysine mutation at position 13 of the chemotaxis regulatory
protein CheY causes a constitutive tumbly phenotype when expressed at high copy
number in vivo even though the mutant protein is not phosphorylatable. These
properties suggest that the D13K mutant adopts the active, signaling
conformation of CheY independent of phosphorylation, so knowledge of its
structure could explain the activation mechanism of CheY. The x-ray
crystallographic structure of the CheY D13K mutant has been solved and refined
at 2.3 A resolution to an R-factor of 14.3%. The mutant molecule shows no
significant differences in backbone conformation when compared with the
wild-type, Mg2+-free structure, but there are localized changes within the
active site. The side chain of lysine 13 blocks access to the active site,
whereas its epsilon-amino group has no bonding interactions with other groups in
the region. Also in the active site, the bond between lysine 109 and aspartate
57 is weakened, and the solvent structure is perturbed. Although the D13K mutant
has the inactive conformation in the crystalline form, rearrangements in the
active site appear to weaken the overall structure of that region, potentially
creating a metastable state of the molecule. If a conformational change is
required for signaling by CheY D13K, then it most likely proceeds dynamically,
in solution.
|
|
|
|
|
| |
Selected figure(s)
|
|
|
| |
 |
 |
|
 |
|
 |
Figure 4.
Fig. 4. Comparison of CheY active sites. A, active site of
wild-type CheY at 1.7 Å resolution (14). B, active site of
CheY D13K at 2.3 Å resolution. The orientation is
approximately the^ same as in Fig. 2. The solvent molecules are
numbered in order of increasing temperature factors for each
structure.
|
 |
Figure 5.
Fig. 5. Schematic diagram of possible activation pathways for
wild-type CheY and CheY D13K.
|
 |
|
|
|
| |
The above figures are
reprinted
by permission from the ASBMB:
J Biol Chem
(1997,
272,
11850-11855)
copyright 1997.
|
|
| |
Figures were
selected
by an automated process.
|
|
|
|
|
 |
 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
Literature references that cite this PDB file's key reference
|
|
 |
| |
PubMed id
|
 |
Reference
|
 |
|
|
|
 |
T.R.Mack,
R.Gao,
and
A.M.Stock
(2009).
Probing the roles of the two different dimers mediated by the receiver domain of the response regulator PhoB.
|
| |
J Mol Biol,
389,
349-364.
|
 |
|
|
|
|
 |
C.M.Dyer,
and
F.W.Dahlquist
(2006).
Switched or not?: the structure of unphosphorylated CheY bound to the N terminus of FliM.
|
| |
J Bacteriol,
188,
7354-7363.
|
 |
|
PDB code:
|
 |
|
|
|
|
|
 |
V.Menon,
D.Li,
N.Chauhan,
R.Rajnarayanan,
A.Dubrovska,
A.H.West,
and
R.Calderone
(2006).
Functional studies of the Ssk1p response regulator protein of Candida albicans as determined by phenotypic analysis of receiver domain point mutants.
|
| |
Mol Microbiol,
62,
997.
|
 |
|
|
|
|
 |
K.I.Varughese
(2005).
Conformational changes of Spo0F along the phosphotransfer pathway.
|
| |
J Bacteriol,
187,
8221-8227.
|
 |
|
|
|
|
 |
C.Benda,
C.Scheufler,
N.Tandeau de Marsac,
and
W.Gärtner
(2004).
Crystal structures of two cyanobacterial response regulators in apo- and phosphorylated form reveal a novel dimerization motif of phytochrome-associated response regulators.
|
| |
Biophys J,
87,
476-487.
|
 |
|
PDB codes:
|
 |
|
|
|
|
|
 |
C.J.Bent,
N.W.Isaacs,
T.J.Mitchell,
and
A.Riboldi-Tunnicliffe
(2004).
Crystal structure of the response regulator 02 receiver domain, the essential YycF two-component system of Streptococcus pneumoniae in both complexed and native states.
|
| |
J Bacteriol,
186,
2872-2879.
|
 |
|
PDB codes:
|
 |
|
|
|
|
|
 |
C.Birck,
Y.Chen,
F.M.Hulett,
and
J.P.Samama
(2003).
The crystal structure of the phosphorylation domain in PhoP reveals a functional tandem association mediated by an asymmetric interface.
|
| |
J Bacteriol,
185,
254-261.
|
 |
|
PDB code:
|
 |
|
|
|
|
|
 |
J.G.Smith,
J.A.Latiolais,
G.P.Guanga,
S.Citineni,
R.E.Silversmith,
and
R.B.Bourret
(2003).
Investigation of the role of electrostatic charge in activation of the Escherichia coli response regulator CheY.
|
| |
J Bacteriol,
185,
6385-6391.
|
 |
|
|
|
|
 |
I.Delany,
G.Spohn,
R.Rappuoli,
and
V.Scarlato
(2002).
Growth phase-dependent regulation of target gene promoters for binding of the essential orphan response regulator HP1043 of Helicobacter pylori.
|
| |
J Bacteriol,
184,
4800-4810.
|
 |
|
|
|
|
 |
A.Bren,
and
M.Eisenbach
(2000).
How signals are heard during bacterial chemotaxis: protein-protein interactions in sensory signal propagation.
|
| |
J Bacteriol,
182,
6865-6873.
|
 |
|
|
|
|
 |
A.M.Stock,
V.L.Robinson,
and
P.N.Goudreau
(2000).
Two-component signal transduction.
|
| |
Annu Rev Biochem,
69,
183-215.
|
 |
|
|
|
|
 |
J.L.Appleby,
and
R.B.Bourret
(1998).
Proposed signal transduction role for conserved CheY residue Thr87, a member of the response regulator active-site quintet.
|
| |
J Bacteriol,
180,
3563-3569.
|
 |
|
|
|
|
 |
M.M.McEvoy,
A.C.Hausrath,
G.B.Randolph,
S.J.Remington,
and
F.W.Dahlquist
(1998).
Two binding modes reveal flexibility in kinase/response regulator interactions in the bacterial chemotaxis pathway.
|
| |
Proc Natl Acad Sci U S A,
95,
7333-7338.
|
 |
|
PDB code:
|
 |
|
|
|
|
|
 |
M.S.Jurica,
and
B.L.Stoddard
(1998).
Mind your B's and R's: bacterial chemotaxis, signal transduction and protein recognition.
|
| |
Structure,
6,
809-813.
|
 |
|
|
|
|
 |
P.N.Goudreau,
and
A.M.Stock
(1998).
Signal transduction in bacteria: molecular mechanisms of stimulus-response coupling.
|
| |
Curr Opin Microbiol,
1,
160-169.
|
 |
|
|
|
|
 |
U.Alon,
L.Camarena,
M.G.Surette,
B.Aguera y Arcas,
Y.Liu,
S.Leibler,
and
J.B.Stock
(1998).
Response regulator output in bacterial chemotaxis.
|
| |
EMBO J,
17,
4238-4248.
|
 |
|
 |
 |
|
The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
|
');
}
}
 |