Literature references that cite this PDB file's
key reference
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PubMed id
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Reference
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B.Khemakhem,
M.B.Ali,
N.Aghajari,
M.Juy,
R.Haser,
and
S.Bejar
(2009).
Engineering of the alpha-amylase from Geobacillus stearothermophilus US100 for detergent incorporation.
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Biotechnol Bioeng, 102,
380-389.
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Y.Liu,
W.Shen,
G.Y.Shi,
and
Z.X.Wang
(2009).
Role of the Calcium-Binding Residues Asp231, Asp233, and Asp438 in Alpha-Amylase of Bacillus amyloliquefaciens as Revealed by Mutational Analysis.
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Curr Microbiol, 0,
0.
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A.Cartmell,
E.Topakas,
V.M.Ducros,
M.D.Suits,
G.J.Davies,
and
H.J.Gilbert
(2008).
The Cellvibrio japonicus Mannanase CjMan26C Displays a Unique exo-Mode of Action That Is Conferred by Subtle Changes to the Distal Region of the Active Site.
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J Biol Chem, 283,
34403-34413.
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PDB codes:
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J.L.Uma Maheswar Rao,
and
T.Satyanarayana
(2008).
Biophysical and biochemical characterization of a hyperthermostable and Ca2+ -independent alpha-Amylase of an extreme thermophile Geobacillus thermoleovorans.
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Appl Biochem Biotechnol, 150,
205-219.
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J.Y.Damián-Almazo,
A.Moreno,
A.López-Munguía,
X.Soberón,
F.González-Muñoz,
and
G.Saab-Rincón
(2008).
Enhancement of the alcoholytic activity of alpha-amylase AmyA from Thermotoga maritima MSB8 (DSM 3109) by site-directed mutagenesis.
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Appl Environ Microbiol, 74,
5168-5177.
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T.M.Gloster,
J.P.Turkenburg,
J.R.Potts,
B.Henrissat,
and
G.J.Davies
(2008).
Divergence of catalytic mechanism within a glycosidase family provides insight into evolution of carbohydrate metabolism by human gut flora.
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Chem Biol, 15,
1058-1067.
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PDB codes:
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Y.Xu,
M.Yang,
J.Sun,
J.Qian,
D.Zhang,
Y.Sun,
L.Ma,
and
C.Zhu
(2008).
Glycogen branching enzyme: a novel deltamethrin resistance-associated gene from Culex pipiens pallens.
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Parasitol Res, 103,
449-458.
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L.E.Tailford,
V.A.Money,
N.L.Smith,
C.Dumon,
G.J.Davies,
and
H.J.Gilbert
(2007).
Mannose foraging by Bacteroides thetaiotaomicron: structure and specificity of the beta-mannosidase, BtMan2A.
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J Biol Chem, 282,
11291-11299.
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PDB code:
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R.Priyadharshini,
and
P.Gunasekaran
(2007).
Site-directed mutagenesis of the calcium-binding site of alpha-amylase of Bacillus licheniformis.
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Biotechnol Lett, 29,
1493-1499.
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S.Bozonnet,
M.T.Jensen,
M.M.Nielsen,
N.Aghajari,
M.H.Jensen,
B.Kramhøft,
M.Willemoës,
S.Tranier,
R.Haser,
and
B.Svensson
(2007).
The 'pair of sugar tongs' site on the non-catalytic domain C of barley alpha-amylase participates in substrate binding and activity.
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FEBS J, 274,
5055-5067.
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PDB codes:
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Y.Tanaka,
K.Morikawa,
Y.Ohki,
M.Yao,
K.Tsumoto,
N.Watanabe,
T.Ohta,
and
I.Tanaka
(2007).
Structural and mutational analyses of Drp35 from Staphylococcus aureus: a possible mechanism for its lactonase activity.
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J Biol Chem, 282,
5770-5780.
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PDB codes:
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Y.Tanaka,
T.Sasaki,
I.Kumagai,
Y.Yasutake,
M.Yao,
I.Tanaka,
and
K.Tsumoto
(2007).
Molecular properties of two proteins homologous to PduO-type ATP:cob(I)alamin adenosyltransferase from Sulfolobus tokodaii.
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Proteins, 68,
446-457.
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H.Bach,
and
D.L.Gutnick
(2006).
Novel polysaccharide-protein-based amphipathic formulations.
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Appl Microbiol Biotechnol, 71,
34-38.
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R.Kanai,
K.Haga,
T.Akiba,
K.Yamane,
and
K.Harata
(2006).
Role of Trp140 at subsite -6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707.
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Protein Sci, 15,
468-477.
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PDB codes:
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G.J.Davies,
A.M.Brzozowski,
Z.Dauter,
M.D.Rasmussen,
T.V.Borchert,
and
K.S.Wilson
(2005).
Structure of a Bacillus halmapalus family 13 alpha-amylase, BHA, in complex with an acarbose-derived nonasaccharide at 2.1 A resolution.
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Acta Crystallogr D Biol Crystallogr, 61,
190-193.
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PDB code:
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R.Maurus,
A.Begum,
H.H.Kuo,
A.Racaza,
S.Numao,
C.Andersen,
J.W.Tams,
J.Vind,
C.M.Overall,
S.G.Withers,
and
G.D.Brayer
(2005).
Structural and mechanistic studies of chloride induced activation of human pancreatic alpha-amylase.
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Protein Sci, 14,
743-755.
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PDB codes:
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W.Ubhayasekera,
I.G.Muñoz,
A.Vasella,
J.Ståhlberg,
and
S.L.Mowbray
(2005).
Structures of Phanerochaete chrysosporium Cel7D in complex with product and inhibitors.
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FEBS J, 272,
1952-1964.
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PDB codes:
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X.Robert,
R.Haser,
H.Mori,
B.Svensson,
and
N.Aghajari
(2005).
Oligosaccharide binding to barley alpha-amylase 1.
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J Biol Chem, 280,
32968-32978.
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PDB codes:
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K.S.Bak-Jensen,
G.André,
T.E.Gottschalk,
G.Paës,
V.Tran,
and
B.Svensson
(2004).
Tyrosine 105 and threonine 212 at outermost substrate binding subsites -6 and +4 control substrate specificity, oligosaccharide cleavage patterns, and multiple binding modes of barley alpha-amylase 1.
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J Biol Chem, 279,
10093-10102.
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S.Numao,
I.Damager,
C.Li,
T.M.Wrodnigg,
A.Begum,
C.M.Overall,
G.D.Brayer,
and
S.G.Withers
(2004).
In situ extension as an approach for identifying novel alpha-amylase inhibitors.
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J Biol Chem, 279,
48282-48291.
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PDB codes:
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A.Linden,
O.Mayans,
W.Meyer-Klaucke,
G.Antranikian,
and
M.Wilmanns
(2003).
Differential regulation of a hyperthermophilic alpha-amylase with a novel (Ca,Zn) two-metal center by zinc.
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J Biol Chem, 278,
9875-9884.
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PDB codes:
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A.Tanaka,
and
E.Hoshino
(2003).
Secondary calcium-binding parameter of Bacillus amyloliquefaciens alpha-amylase obtained from inhibition kinetics.
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J Biosci Bioeng, 96,
262-267.
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M.Kagawa,
Z.Fujimoto,
M.Momma,
K.Takase,
and
H.Mizuno
(2003).
Crystal structure of Bacillus subtilis alpha-amylase in complex with acarbose.
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J Bacteriol, 185,
6981-6984.
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PDB code:
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M.Machius,
N.Declerck,
R.Huber,
and
G.Wiegand
(2003).
Kinetic stabilization of Bacillus licheniformis alpha-amylase through introduction of hydrophobic residues at the surface.
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J Biol Chem, 278,
11546-11553.
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PDB code:
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N.Oudjeriouat,
Y.Moreau,
M.Santimone,
B.Svensson,
G.Marchis-Mouren,
and
V.Desseaux
(2003).
On the mechanism of alpha-amylase.
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Eur J Biochem, 270,
3871-3879.
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H.Mori,
K.S.Bak-Jensen,
and
B.Svensson
(2002).
Barley alpha-amylase Met53 situated at the high-affinity subsite -2 belongs to a substrate binding motif in the beta-->alpha loop 2 of the catalytic (beta/alpha)8-barrel and is critical for activity and substrate specificity.
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Eur J Biochem, 269,
5377-5390.
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T.P.Frandsen,
M.M.Palcic,
and
B.Svensson
(2002).
Substrate recognition by three family 13 yeast alpha-glucosidases.
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Eur J Biochem, 269,
728-734.
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H.Mori,
K.S.Bak-Jensen,
T.E.Gottschalk,
M.S.Motawia,
I.Damager,
B.L.Møller,
and
B.Svensson
(2001).
Modulation of activity and substrate binding modes by mutation of single and double subsites +1/+2 and -5/-6 of barley alpha-amylase 1.
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Eur J Biochem, 268,
6545-6558.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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483 a.a.
_CA
_NA
