PDBsum entry 1bmf

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protein ligands metals Protein-protein interface(s) links
Atp phosphorylase PDB id
Protein chains
487 a.a. *
467 a.a. *
122 a.a. *
ANP ×4
_MG ×5
Waters ×603
* Residue conservation analysis
PDB id:
Name: Atp phosphorylase
Title: Bovine mitochondrial f1-atpase
Structure: Bovine mitochondrial f1-atpase. Chain: a, b, c. Synonym: f1-atpase. Bovine mitochondrial f1-atpase. Chain: d, e, f. Synonym: f1-atpase. Bovine mitochondrial f1-atpase. Chain: g. Synonym: f1-atpase.
Source: Bos taurus. Cattle. Organism_taxid: 9913. Organ: heart. Tissue: muscle. Organelle: mitochondrion. Organelle: mitochondrion
Biol. unit: Heptamer (from PQS)
2.85Å     R-factor:   0.172     R-free:   0.254
Authors: J.P.Abrahams,A.G.W.Leslie,R.Lutter,J.E.Walker
Key ref: J.P.Abrahams et al. (1994). Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria. Nature, 370, 621-628. PubMed id: 8065448
13-Mar-96     Release date:   07-Dec-96    
Go to PROCHECK summary

Protein chains
Pfam   ArchSchema ?
P19483  (ATPA_BOVIN) -  ATP synthase subunit alpha, mitochondrial
553 a.a.
487 a.a.*
Protein chains
Pfam   ArchSchema ?
P00829  (ATPB_BOVIN) -  ATP synthase subunit beta, mitochondrial
528 a.a.
467 a.a.
Protein chain
Pfam   ArchSchema ?
P05631  (ATPG_BOVIN) -  ATP synthase subunit gamma, mitochondrial
298 a.a.
122 a.a.
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: Chains D, E, F: E.C.  - H(+)-transporting two-sector ATPase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: ATP + H2O + H+(In) = ADP + phosphate + H+(Out)
+ H(2)O
+ H(+)(In)
Bound ligand (Het Group name = ADP)
corresponds exactly
+ phosphate
+ H(+)(Out)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     membrane   12 terms 
  Biological process     transport   12 terms 
  Biochemical function     nucleotide binding     10 terms  


Nature 370:621-628 (1994)
PubMed id: 8065448  
Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria.
J.P.Abrahams, A.G.Leslie, R.Lutter, J.E.Walker.
In the crystal structure of bovine mitochondrial F1-ATPase determined at 2.8 A resolution, the three catalytic beta-subunits differ in conformation and in the bound nucleotide. The structure supports a catalytic mechanism in intact ATP synthase in which the three catalytic subunits are in different states of the catalytic cycle at any instant. Interconversion of the states may be achieved by rotation of the alpha 3 beta 3 subassembly relative to an alpha-helical domain of the gamma-subunit.

Literature references that cite this PDB file's key reference

  PubMed id Reference
23334411 S.Arai, S.Saijo, K.Suzuki, K.Mizutani, Y.Kakinuma, Y.Ishizuka-Katsura, N.Ohsawa, T.Terada, M.Shirouzu, S.Yokoyama, S.Iwata, I.Yamato, and T.Murata (2013).
Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures.
  Nature, 493, 703-707.
PDB codes: 3vr2 3vr3 3vr4 3vr5 3vr6
23250061 W.A.Hendrickson (2013).
Evolution of diffraction methods for solving crystal structures.
  Acta Crystallogr A, 69, 51-59.  
22504883 J.Symersky, V.Pagadala, D.Osowski, A.Krah, T.Meier, J.D.Faraldo-Gómez, and D.M.Mueller (2012).
Structure of the c(10) ring of the yeast mitochondrial ATP synthase in the open conformation.
  Nat Struct Mol Biol, 19, 485.
PDB codes: 3u2f 3u2y 3u32 3ud0
22178924 W.C.Lau, and J.L.Rubinstein (2012).
Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.
  Nature, 481, 214-218.
PDB code: 3j0j
21330489 A.P.Carter, C.Cho, L.Jin, and R.D.Vale (2011).
Crystal structure of the dynein motor domain.
  Science, 331, 1159-1165.
PDB code: 3qmz
21368147 A.Wächter, Y.Bi, S.D.Dunn, B.D.Cain, H.Sielaff, F.Wintermann, S.Engelbrecht, and W.Junge (2011).
Two rotary motors in F-ATP synthase are elastically coupled by a flexible rotor and a stiff stator stalk.
  Proc Natl Acad Sci U S A, 108, 3924-3929.  
21282052 A.Y.Lyubimov, M.Strycharska, and J.M.Berger (2011).
The nuts and bolts of ring-translocase structure and mechanism.
  Curr Opin Struct Biol, 21, 240-248.  
21602818 G.Cingolani, and T.M.Duncan (2011).
Structure of the ATP synthase catalytic complex (F(1)) from Escherichia coli in an autoinhibited conformation.
  Nat Struct Mol Biol, 18, 701-707.  
21502534 J.Czub, and H.Grubmüller (2011).
Torsional elasticity and energetics of F1-ATPase.
  Proc Natl Acad Sci U S A, 108, 7408-7413.  
21213027 J.Y.Honda, I.Kobayashi, T.Kiyoshima, K.Nagata, H.Wada, Y.Ookuma, H.Fujiwara, M.Shiotsuka, I.Takahashi, and H.Sakai (2011).
In situ expression of the mitochondrial ATPase6 gene in the developing tooth germ of the mouse lower first molar.
  J Mol Histol, 42, 83-90.  
21481781 K.Okazaki, and S.Takada (2011).
Structural Comparison of F(1)-ATPase: Interplay among Enzyme Structures, Catalysis, and Rotations.
  Structure, 19, 588-598.  
21305683 M.Börsch, and J.Wrachtrup (2011).
Improving FRET-Based Monitoring of Single Chemomechanical Rotary Motors at Work.
  Chemphyschem, 12, 542-553.  
21073359 M.Börsch (2011).
Single-molecule fluorescence resonance energy transfer techniques on rotary ATP synthases.
  Biol Chem, 392, 135-142.  
21396943 M.S.Manimekalai, A.Kumar, J.Jeyakanthan, and G.Grüber (2011).
The Transition-Like State and P(i) Entrance into the Catalytic A Subunit of the Biological Engine A-ATP Synthase.
  J Mol Biol, 408, 736-754.
PDB codes: 3nd8 3nd9 3p20
21287678 R.Bienert, B.Zimmermann, V.Rombach-Riegraf, and P.Gräber (2011).
Time-Dependent FRET with Single Enzymes: Domain Motions and Catalysis in H(+) -ATP Synthases.
  Chemphyschem, 12, 510-517.  
21383131 T.Beke-Somfai, P.Lincoln, and B.Nordén (2011).
Double-lock ratchet mechanism revealing the role of alphaSER-344 in FoF1 ATP synthase.
  Proc Natl Acad Sci U S A, 108, 4828-4833.  
21278755 T.Ibuki, K.Imada, T.Minamino, T.Kato, T.Miyata, and K.Namba (2011).
Common architecture of the flagellar type III protein export apparatus and F- and V-type ATPases.
  Nat Struct Mol Biol, 18, 277-282.
PDB code: 3ajw
21307307 W.Li, P.G.Wolynes, and S.Takada (2011).
Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins.
  Proc Natl Acad Sci U S A, 108, 3504-3509.  
20453832 A.Diepold, M.Amstutz, S.Abel, I.Sorg, U.Jenal, and G.R.Cornelis (2010).
Deciphering the assembly of the Yersinia type III secretion injectisome.
  EMBO J, 29, 1928-1940.  
19933271 A.Meulemans, S.Seneca, T.Pribyl, J.Smet, V.Alderweirldt, A.Waeytens, W.Lissens, R.Van Coster, L.De Meirleir, J.P.di Rago, D.L.Gatti, and S.H.Ackerman (2010).
Defining the pathogenesis of the human Atp12p W94R mutation using a Saccharomyces cerevisiae yeast model.
  J Biol Chem, 285, 4099-4109.  
20706787 A.N.Malyan (2010).
Nucleotide binding to noncatalytic sites is essential for ATP-dependent stimulation and ADP-dependent inactivation of the chloroplast ATP synthase.
  Photosynth Res, 105, 243-248.  
20331427 A.N.Malyan (2010).
Role of short conserved segments of alpha- and beta-subunits that link F(1)-ATPase catalytic and noncatalytic sites.
  Biochemistry (Mosc), 75, 81-84.  
20141757 B.A.Feniouk, Y.Kato-Yamada, M.Yoshida, and T.Suzuki (2010).
Conformational transitions of subunit epsilon in ATP synthase from thermophilic Bacillus PS3.
  Biophys J, 98, 434-442.  
20947758 D.E.Shaw, P.Maragakis, K.Lindorff-Larsen, S.Piana, R.O.Dror, M.P.Eastwood, J.A.Bank, J.M.Jumper, J.K.Salmon, Y.Shan, and W.Wriggers (2010).
Atomic-level characterization of the structural dynamics of proteins.
  Science, 330, 341-346.  
20798341 D.G.Isom, C.A.Castañeda, B.R.Cannon, P.D.Velu, and B.García-Moreno E (2010).
Charges in the hydrophobic interior of proteins.
  Proc Natl Acad Sci U S A, 107, 16096-16100.  
20972431 D.Pogoryelov, A.Krah, J.D.Langer, ├.ľ.Yildiz, J.D.Faraldo-Gómez, and T.Meier (2010).
Microscopic rotary mechanism of ion translocation in the F(o) complex of ATP synthases.
  Nat Chem Biol, 6, 891-899.
PDB codes: 2xqs 2xqt 2xqu
20655344 D.W.Urry, K.D.Urry, W.Szaflarski, and M.Nowicki (2010).
Elastic-contractile model proteins: Physical chemistry, protein function and drug design and delivery.
  Adv Drug Deliv Rev, 62, 1404-1455.  
20421199 E.Sunamura, H.Konno, M.Imashimizu-Kobayashi, Y.Sugano, and T.Hisabori (2010).
Physiological impact of intrinsic ADP inhibition of cyanobacterial FoF1 conferred by the inherent sequence inserted into the gammasubunit.
  Plant Cell Physiol, 51, 855-865.  
20847295 I.N.Watt, M.G.Montgomery, M.J.Runswick, A.G.Leslie, and J.E.Walker (2010).
Bioenergetic cost of making an adenosine triphosphate molecule in animal mitochondria.
  Proc Natl Acad Sci U S A, 107, 16823-16827.
PDB code: 2xnd
20820587 J.Hoffmann, L.Sokolova, L.Preiss, D.B.Hicks, T.A.Krulwich, N.Morgner, I.Wittig, H.Schägger, T.Meier, and B.Brutschy (2010).
ATP synthases: cellular nanomotors characterized by LILBID mass spectrometry.
  Phys Chem Chem Phys, 12, 13375-13382.  
20809990 J.V.Møller, C.Olesen, A.M.Winther, and P.Nissen (2010).
The sarcoplasmic Ca2+-ATPase: design of a perfect chemi-osmotic pump.
  Q Rev Biophys, 43, 501-566.  
20173764 L.K.Lee, A.G.Stewart, M.Donohoe, R.A.Bernal, and D.Stock (2010).
The structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase.
  Nat Struct Mol Biol, 17, 373-378.
PDB code: 3k5b
20689804 L.Preiss, O.Yildiz, D.B.Hicks, T.A.Krulwich, and T.Meier (2010).
A new type of proton coordination in an F(1)F(o)-ATP synthase rotor ring.
  PLoS Biol, 8, e1000443.
PDB code: 2x2v
21149680 M.Veelders, S.Brückner, D.Ott, C.Unverzagt, H.U.Mösch, and L.O.Essen (2010).
Structural basis of flocculin-mediated social behavior in yeast.
  Proc Natl Acad Sci U S A, 107, 22511-22516.
PDB codes: 2xjp 2xjq 2xjr 2xjs 2xjt 2xju 2xjv
20658341 N.Arora, A.K.Banerjee, and U.S.Murty (2010).
In silico characterization of Shikimate Kinase of Shigella flexneri: A potential drug target.
  Interdiscip Sci, 2, 280-290.  
20644710 P.Balabaskaran Nina, N.V.Dudkina, L.A.Kane, J.E.van Eyk, E.J.Boekema, M.W.Mather, and A.B.Vaidya (2010).
Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila.
  PLoS Biol, 8, e1000418.  
20371322 R.Shimo-Kon, E.Muneyuki, H.Sakai, K.Adachi, M.Yoshida, and K.Kinosita (2010).
Chemo-mechanical coupling in F(1)-ATPase revealed by catalytic site occupancy during catalysis.
  Biophys J, 98, 1227-1236.  
20871600 R.Watanabe, R.Iino, and H.Noji (2010).
Phosphate release in F1-ATPase catalytic cycle follows ADP release.
  Nat Chem Biol, 6, 814-820.  
20204450 S.J.Facey, and A.Kuhn (2010).
Biogenesis of bacterial inner-membrane proteins.
  Cell Mol Life Sci, 67, 2343-2362.  
20858734 S.J.Ferguson (2010).
ATP synthase: from sequence to ring size to the P/O ratio.
  Proc Natl Acad Sci U S A, 107, 16755-16756.  
20060706 S.Sun, V.B.Rao, and M.G.Rossmann (2010).
Genome packaging in viruses.
  Curr Opin Struct Biol, 20, 114-120.  
20100509 T.F.Laughlin, and Z.Ahmad (2010).
Inhibition of Escherichia coli ATP synthase by amphibian antimicrobial peptides.
  Int J Biol Macromol, 46, 367-374.  
20814832 V.P.Tychinsky, and A.N.Tikhonov (2010).
Interference microscopy in cell biophysics. 2. Visualization of individual cells and energy-transducing organelles.
  Cell Biochem Biophys, 58, 117-128.  
20370611 V.V.Bulygin, and Y.M.Milgrom (2010).
Probes of inhibition of Escherichia coli F(1)-ATPase by 7-chloro-4-nitrobenz-2-oxa-1,3-diazole in the presence of MgADP and MgATP support a bi-site mechanism of ATP hydrolysis by the enzyme.
  Biochemistry (Mosc), 75, 327-335.  
20080582 W.C.Lau, and J.L.Rubinstein (2010).
Structure of intact Thermus thermophilus V-ATPase by cryo-EM reveals organization of the membrane-bound V(O) motor.
  Proc Natl Acad Sci U S A, 107, 1367-1372.  
20192763 W.Yang (2010).
Lessons learned from UvrD helicase: mechanism for directional movement.
  Annu Rev Biophys, 39, 367-385.  
20820716 Y.G.Shu, J.C.Yue, and Z.C.Ou-Yang (2010).
F(o)F(1)-ATPase, rotary motor and biosensor.
  Nanoscale, 2, 1284-1293.  
20336770 Y.Ito, and M.Ikeguchi (2010).
Structural fluctuation and concerted motions in F(1)-ATPase: A molecular dynamics study.
  J Comput Chem, 31, 2175-2185.  
20689227 Y.Kagawa (2010).
ATP synthase: from single molecule to human bioenergetics.
  Proc Jpn Acad Ser B Phys Biol Sci, 86, 667-693.  
21040305 Y.Pang, H.Wang, W.Q.Song, and Y.X.Zhu (2010).
The cotton ATP synthase ╬┤1 subunit is required to maintain a higher ATP/ADP ratio that facilitates rapid fibre cell elongation.
  Plant Biol (Stuttg), 12, 903-909.  
20567074 Z.Dauter, M.Jaskolski, and A.Wlodawer (2010).
Impact of synchrotron radiation on macromolecular crystallography: a personal view.
  J Synchrotron Radiat, 17, 433-444.  
19383603 A.Ludlam, J.Brunzelle, T.Pribyl, X.Xu, D.L.Gatti, and S.H.Ackerman (2009).
Chaperones of F1-ATPase.
  J Biol Chem, 284, 17138-17146.
PDB codes: 2r31 2zd2
19171966 A.M.Karmali, T.L.Blundell, and N.Furnham (2009).
Model-building strategies for low-resolution X-ray crystallographic data.
  Acta Crystallogr D Biol Crystallogr, 65, 121-127.  
19273842 A.Robson, V.A.Gold, S.Hodson, A.R.Clarke, and I.Collinson (2009).
Energy transduction in protein transport and the ATP hydrolytic cycle of SecA.
  Proc Natl Acad Sci U S A, 106, 5111-5116.  
19217392 B.Bae, Y.H.Chen, A.Costa, S.Onesti, J.S.Brunzelle, Y.Lin, I.K.Cann, and S.K.Nair (2009).
Insights into the architecture of the replicative helicase from the structure of an archaeal MCM homolog.
  Structure, 17, 211-222.
PDB code: 3f8t
19489730 C.von Ballmoos, A.Wiedenmann, and P.Dimroth (2009).
Essentials for ATP synthesis by F1F0 ATP synthases.
  Annu Rev Biochem, 78, 649-672.  
19540850 D.Lucarelli, Y.A.Wang, V.E.Galkin, X.Yu, D.B.Wigley, and E.H.Egelman (2009).
The RecB nuclease domain binds to RecA-DNA filaments: implications for filament loading.
  J Mol Biol, 391, 269-274.  
19783985 D.Pogoryelov, O.Yildiz, J.D.Faraldo-Gómez, and T.Meier (2009).
High-resolution structure of the rotor ring of a proton-dependent ATP synthase.
  Nat Struct Mol Biol, 16, 1068-1073.
PDB code: 2wie
19578988 F.Di Rocco, A.D.Zambelli, and L.B.Vidal Rioja (2009).
Identification of camelid specific residues in mitochondrial ATP synthase subunits.
  J Bioenerg Biomembr, 41, 223-228.  
20161522 H.B.Gray, and J.R.Winkler (2009).
Electron Flow through Proteins.
  Chem Phys Lett, 483, 1-9.  
19348765 J.G.Wise, and P.D.Vogel (2009).
Accommodating discontinuities in dimeric left-handed coiled coils in ATP synthase external stalks.
  Biophys J, 96, 2823-2831.  
19966409 J.Sanchez-Weatherby, M.W.Bowler, J.Huet, A.Gobbo, F.Felisaz, B.Lavault, R.Moya, J.Kadlec, R.B.Ravelli, and F.Cipriani (2009).
Improving diffraction by humidity control: a novel device compatible with X-ray beamlines.
  Acta Crystallogr D Biol Crystallogr, 65, 1237-1246.
PDB codes: 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j
19462418 K.M.Johnson, L.Swenson, A.W.Opipari, R.Reuter, N.Zarrabi, C.A.Fierke, M.Börsch, and G.D.Glick (2009).
Mechanistic basis for differential inhibition of the F(1)F(o)-ATPase by aurovertin.
  Biopolymers, 91, 830-840.  
19450514 K.R.Simonetta, S.L.Kazmirski, E.R.Goedken, A.J.Cantor, B.A.Kelch, R.McNally, S.N.Seyedin, D.L.Makino, M.O'Donnell, and J.Kuriyan (2009).
The mechanism of ATP-dependent primer-template recognition by a clamp loader complex.
  Cell, 137, 659-671.
PDB codes: 3glf 3glg 3glh 3gli
19362069 L.Bae, and S.B.Vik (2009).
A more robust version of the Arginine 210-switched mutant in subunit a of the Escherichia coli ATP synthase.
  Biochim Biophys Acta, 1787, 1129-1134.  
19477165 L.S.Chen, B.J.Nowak, M.L.Ayres, N.L.Krett, S.T.Rosen, S.Zhang, and V.Gandhi (2009).
Inhibition of ATP synthase by chlorinated adenosine analogue.
  Biochem Pharmacol, 78, 583-591.  
19096392 L.Shen, L.Zhi, W.Hu, and M.X.Wu (2009).
IEX-1 targets mitochondrial F1Fo-ATPase inhibitor for degradation.
  Cell Death Differ, 16, 603-612.  
19893485 M.J.Maher, S.Akimoto, M.Iwata, K.Nagata, Y.Hori, M.Yoshida, S.Yokoyama, S.Iwata, and K.Yokoyama (2009).
Crystal structure of A3B3 complex of V-ATPase from Thermus thermophilus.
  EMBO J, 28, 3771-3779.
PDB code: 3gqb
20166550 M.Murata, Y.Miwa, and I.Sato (2009).
Expression of respiratory chain enzyme mRNA and the morphological properties of mitochondria in the masseter muscles of klotho mutant mice.
  Okajimas Folia Anat Jpn, 86, 93.  
18672007 M.Rak, X.Zeng, J.J.Brière, and A.Tzagoloff (2009).
Assembly of F0 in Saccharomyces cerevisiae.
  Biochim Biophys Acta, 1793, 108-116.  
19502237 M.Sekiya, R.K.Nakamoto, M.K.Al-Shawi, M.Nakanishi-Matsui, and M.Futai (2009).
Temperature dependence of single molecule rotation of the Escherichia coli ATP synthase F1 sector reveals the importance of gamma-beta subunit interactions in the catalytic dwell.
  J Biol Chem, 284, 22401-22410.  
19423706 M.Vollmar, D.Schlieper, M.Winn, C.Büchner, and G.Groth (2009).
Structure of the c14 Rotor Ring of the Proton Translocating Chloroplast ATP Synthase.
  J Biol Chem, 284, 18228-18235.
PDB code: 2w5j
19879839 N.D.Thomsen, and J.M.Berger (2009).
Running in reverse: the structural basis for translocation polarity in hexameric helicases.
  Cell, 139, 523-534.
PDB code: 3ice
19246448 N.Mnatsakanyan, A.M.Krishnakumar, T.Suzuki, and J.Weber (2009).
The Role of the {beta}DELSEED-loop of ATP Synthase.
  J Biol Chem, 284, 11336-11345.  
19636076 N.Mnatsakanyan, J.A.Hook, L.Quisenberry, and J.Weber (2009).
ATP synthase with its gamma subunit reduced to the N-terminal helix can still catalyze ATP synthesis.
  J Biol Chem, 284, 26519-26525.  
19542218 P.R.Steed, and R.H.Fillingame (2009).
Aqueous accessibility to the transmembrane regions of subunit c of the Escherichia coli F1F0 ATP synthase.
  J Biol Chem, 284, 23243-23250.  
19864418 R.Bienert, V.Rombach-Riegraf, M.Diez, and P.Gräber (2009).
Subunit movements in single membrane-bound H+-ATP synthases from chloroplasts during ATP synthesis.
  J Biol Chem, 284, 36240-36247.  
19369253 S.B.Claggett, M.O.Plancher, S.D.Dunn, and B.D.Cain (2009).
The b Subunits in the Peripheral Stalk of F1F0 ATP Synthase Preferentially Adopt an Offset Relationship.
  J Biol Chem, 284, 16531-16540.  
19561076 S.Enoki, R.Watanabe, R.Iino, and H.Noji (2009).
Single-molecule study on the temperature-sensitive reaction of F1-ATPase with a hybrid F1 carrying a single beta(E190D).
  J Biol Chem, 284, 23169-23176.  
19834508 T.Boesen, and P.Nissen (2009).
V for victory--a V1-ATPase structure revealed.
  EMBO Rep, 10, 1211-1212.  
19233840 V.Kabaleeswaran, H.Shen, J.Symersky, J.E.Walker, A.G.Leslie, and D.M.Mueller (2009).
Asymmetric structure of the yeast f1 ATPase in the absence of bound nucleotides.
  J Biol Chem, 284, 10546-10551.
PDB code: 3fks
19458712 W.Junge, H.Sielaff, and S.Engelbrecht (2009).
Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase.
  Nature, 459, 364-370.  
19240022 W.Li, L.E.Brudecki, A.E.Senior, and Z.Ahmad (2009).
Role of {alpha}-Subunit VISIT-DG Sequence Residues Ser-347 and Gly-351 in the Catalytic Sites of Escherichia coli ATP Synthase.
  J Biol Chem, 284, 10747-10754.  
19079241 W.N.Price, Y.Chen, S.K.Handelman, H.Neely, P.Manor, R.Karlin, R.Nair, J.Liu, M.Baran, J.Everett, S.N.Tong, F.Forouhar, S.S.Swaminathan, T.Acton, R.Xiao, J.R.Luft, A.Lauricella, G.T.DeTitta, B.Rost, G.T.Montelione, and J.F.Hunt (2009).
Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.
  Nat Biotechnol, 27, 51-57.  
19280602 W.Zheng (2009).
Normal-mode-based modeling of allosteric couplings that underlie cyclic conformational transition in F(1) ATPase.
  Proteins, 76, 747-762.  
19450535 Y.Xiang, P.G.Leiman, L.Li, S.Grimes, D.L.Anderson, and M.G.Rossmann (2009).
Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
  Mol Cell, 34, 375-386.
PDB codes: 3gq8 3gq9 3gqa 3gqh 3gqk 3suc
19445679 Z.Ristic, M.Vitali, A.Duci, C.Goetze, K.Kemnitz, W.Zuschratter, H.Lill, and D.Bald (2009).
Two-stimuli manipulation of a biological motor.
  J Nanobiotechnology, 7, 3.  
18846414 A.F.Lodeyro, M.V.Castelli, and O.A.Roveri (2008).
ATP hydrolysis-driven H(+) translocation is stimulated by sulfate, a strong inhibitor of mitochondrial ATP synthesis.
  J Bioenerg Biomembr, 40, 269-279.  
18687699 C.Ando, and N.Ichikawa (2008).
Glutamic acid in the inhibitory site of mitochondrial ATPase inhibitor, IF(1), participates in pH sensing in both mammals and yeast.
  J Biochem, 144, 547-553.  
18368028 D.G.Fuster, J.Zhang, X.S.Xie, and O.W.Moe (2008).
The vacuolar-ATPase B1 subunit in distal tubular acidosis: novel mutations and mechanisms for dysfunction.
  Kidney Int, 73, 1151-1158.  
18423392 D.J.Cipriano, Y.Wang, S.Bond, A.Hinton, K.C.Jefferies, J.Qi, and M.Forgac (2008).
Structure and regulation of the vacuolar ATPases.
  Biochim Biophys Acta, 1777, 599-604.  
19075235 D.Okuno, R.Fujisawa, R.Iino, Y.Hirono-Hara, H.Imamura, and H.Noji (2008).
Correlation between the conformational states of F1-ATPase as determined from its crystal structure and single-molecule rotation.
  Proc Natl Acad Sci U S A, 105, 20722-20727.  
18721138 D.Pogoryelov, Y.Nikolaev, U.Schlattner, K.Pervushin, P.Dimroth, and T.Meier (2008).
Probing the rotor subunit interface of the ATP synthase from Ilyobacter tartaricus.
  FEBS J, 275, 4850-4862.  
18329872 E.J.Enemark, and L.Joshua-Tor (2008).
On helicases and other motor proteins.
  Curr Opin Struct Biol, 18, 243-257.  
18579520 E.Meiss, H.Konno, G.Groth, and T.Hisabori (2008).
Molecular processes of inhibition and stimulation of ATP synthase caused by the phytotoxin tentoxin.
  J Biol Chem, 283, 24594-24599.  
18937357 G.Grüber, and V.Marshansky (2008).
New insights into structure-function relationships between archeal ATP synthase (A1A0) and vacuolar type ATPase (V1V0).
  Bioessays, 30, 1096-1109.  
18319055 G.I.Belogrudov (2008).
The proximal N-terminal amino acid residues are required for the coupling activity of the bovine heart mitochondrial factor B.
  Arch Biochem Biophys, 473, 76-87.  
19035880 G.J.Grover, and J.Malm (2008).
Pharmacological profile of the selective mitochondrial F1F0 ATP hydrolase inhibitor BMS-199264 in myocardial ischemia.
  Cardiovasc Ther, 26, 287-296.  
18415008 H.S.Samra, F.He, N.R.Degner, and M.L.Richter (2008).
The role of specific beta-gamma subunit interactions in oxyanion stimulation of the MgATP hydrolysis of a hybrid photosynthetic F1-ATPase.
  J Bioenerg Biomembr, 40, 69-76.  
18819926 H.Shen, D.E.Walters, and D.M.Mueller (2008).
Introduction of the chloroplast redox regulatory region in the yeast ATP synthase impairs cytochrome C oxidase.
  J Biol Chem, 283, 32937-32943.  
19001275 H.Sielaff, H.Rennekamp, A.Wächter, H.Xie, F.Hilbers, K.Feldbauer, S.D.Dunn, S.Engelbrecht, and W.Junge (2008).
Domain compliance and elastic power transmission in rotary F(O)F(1)-ATPase.
  Proc Natl Acad Sci U S A, 105, 17760-17765.  
18723591 H.Sielaff, H.Rennekamp, S.Engelbrecht, and W.Junge (2008).
Functional halt positions of rotary FOF1-ATPase correlated with crystal structures.
  Biophys J, 95, 4979-4987.  
18579516 H.Z.Mao, C.G.Abraham, A.M.Krishnakumar, and J.Weber (2008).
A Functionally Important Hydrogen-bonding Network at the {beta}DP/{alpha}DP Interface of ATP Synthase.
  J Biol Chem, 283, 24781-24788.  
18628203 J.A.Scanlon, M.K.Al-Shawi, and R.K.Nakamoto (2008).
A rotor-stator cross-link in the F1-ATPase blocks the rate-limiting step of rotational catalysis.
  J Biol Chem, 283, 26228-26240.  
  19669503 J.J.García-Trejo, and E.Morales-Ríos (2008).
Regulation of the F(1)F (0)-ATP Synthase Rotary Nanomotor in its Monomeric-Bacterial and Dimeric-Mitochondrial Forms.
  J Biol Phys, 34, 197-212.  
18768789 J.K.Lee, G.I.Belogrudov, and R.M.Stroud (2008).
Crystal structure of bovine mitochondrial factor B at 0.96-A resolution.
  Proc Natl Acad Sci U S A, 105, 13379-13384.
PDB codes: 3dze 3e2j 3e3z 3e4g
18956030 J.P.Collman, and R.A.Decréau (2008).
Functional biomimetic models for the active site in the respiratory enzyme cytochrome c oxidase.
  Chem Commun (Camb), (), 5065-5076.  
18386081 J.Petersen, C.J.Mitchell, K.Fisher, and D.J.Lowe (2008).
Structural basis for VO(2+)-inhibition of nitrogenase activity: (B) pH-sensitive inner-sphere rearrangements in the 1H-environment of the metal coordination site of the nitrogenase Fe-protein identified by ENDOR spectroscopy.
  J Biol Inorg Chem, 13, 637-650.  
18216260 J.Pu, and M.Karplus (2008).
How subunit coupling produces the gamma-subunit rotary motion in F1-ATPase.
  Proc Natl Acad Sci U S A, 105, 1192-1197.  
18093977 J.Y.Lee, I.L.Urbatsch, A.E.Senior, and S.Wilkens (2008).
Nucleotide-induced structural changes in P-glycoprotein observed by electron microscopy.
  J Biol Chem, 283, 5769-5779.  
18223659 M.A.Seeger, C.von Ballmoos, T.Eicher, L.Brandstätter, F.Verrey, K.Diederichs, and K.M.Pos (2008).
Engineered disulfide bonds support the functional rotation mechanism of multidrug efflux pump AcrB.
  Nat Struct Mol Biol, 15, 199-205.  
18590689 M.Campanella, E.Casswell, S.Chong, Z.Farah, M.R.Wieckowski, A.Y.Abramov, A.Tinker, and M.R.Duchen (2008).
Regulation of mitochondrial structure and function by the F1Fo-ATPase inhibitor protein, IF1.
  Cell Metab, 8, 13-25.  
18708468 M.D.Hossain, S.Furuike, Y.Maki, K.Adachi, T.Suzuki, A.Kohori, H.Itoh, M.Yoshida, and K.Kinosita (2008).
Neither helix in the coiled coil region of the axle of F1-ATPase plays a significant role in torque production.
  Biophys J, 95, 4837-4844.  
18183492 M.Kobayashi, H.Yagi, T.Yamazaki, M.Yoshida, and H.Akutsu (2008).
Dynamic inter-subunit interactions in thermophilic F(1)-ATPase subcomplexes studied by cross-correlated relaxation-enhanced polarization transfer NMR.
  J Biomol NMR, 40, 165-174.  
18339602 M.Nakanishi-Matsui, and M.Futai (2008).
Stochastic rotational catalysis of proton pumping F-ATPase.
  Philos Trans R Soc Lond B Biol Sci, 363, 2135-2142.  
18323778 M.Strauss, G.Hofhaus, R.R.Schröder, and W.Kühlbrandt (2008).
Dimer ribbons of ATP synthase shape the inner mitochondrial membrane.
  EMBO J, 27, 1154-1160.  
18796694 N.C.Benson, and V.Daggett (2008).
Dynameomics: large-scale assessment of native protein flexibility.
  Protein Sci, 17, 2038-2050.  
18647240 N.D.Thomsen, and J.M.Berger (2008).
Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases.
  Mol Microbiol, 69, 1071-1090.  
18465893 O.Paliy, S.M.Gargac, Y.Cheng, V.N.Uversky, and A.K.Dunker (2008).
Protein disorder is positively correlated with gene expression in Escherichia coli.
  J Proteome Res, 7, 2234-2245.  
18667504 P.Ostapchuk, and P.Hearing (2008).
Adenovirus IVa2 protein binds ATP.
  J Virol, 82, 10290-10294.  
18332132 P.R.Steed, and R.H.Fillingame (2008).
Subunit a facilitates aqueous access to a membrane-embedded region of subunit c in Escherichia coli F1F0 ATP synthase.
  J Biol Chem, 283, 12365-12372.  
18515057 R.K.Nakamoto, J.A.Baylis Scanlon, and M.K.Al-Shawi (2008).
The rotary mechanism of the ATP synthase.
  Arch Biochem Biophys, 476, 43-50.  
18064048 R.Watanabe, R.Iino, K.Shimabukuro, M.Yoshida, and H.Noji (2008).
Temperature-sensitive reaction intermediate of F(1)-ATPase.
  EMBO Rep, 9, 84-90.  
18375515 S.Furuike, K.Adachi, N.Sakaki, R.Shimo-Kon, H.Itoh, E.Muneyuki, M.Yoshida, and K.Kinosita (2008).
Temperature dependence of the rotation and hydrolysis activities of F1-ATPase.
  Biophys J, 95, 761-770.  
18276891 S.Furuike, M.D.Hossain, Y.Maki, K.Adachi, T.Suzuki, A.Kohori, H.Itoh, M.Yoshida, and K.Kinosita (2008).
Axle-less F1-ATPase rotates in the correct direction.
  Science, 319, 955-958.  
19325832 S.Nath (2008).
The new unified theory of ATP synthesis/hydrolysis and muscle contraction, its manifold fundamental consequences and mechanistic implications and its applications in health and disease.
  Int J Mol Sci, 9, 1784-1840.  
18316723 S.Steigmiller, P.Turina, and P.Gräber (2008).
The thermodynamic H+/ATP ratios of the H+-ATPsynthases from chloroplasts and Escherichia coli.
  Proc Natl Acad Sci U S A, 105, 3745-3750.  
19109896 S.Sun, K.Kondabagil, B.Draper, T.I.Alam, V.D.Bowman, Z.Zhang, S.Hegde, A.Fokine, M.G.Rossmann, and V.B.Rao (2008).
The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces.
  Cell, 135, 1251-1262.
PDB codes: 3c6a 3c6h 3cpe 3ezk
18326647 T.Hornung, O.A.Volkov, T.M.Zaida, S.Delannoy, J.G.Wise, and P.D.Vogel (2008).
Structure of the cytosolic part of the subunit b-dimer of Escherichia coli F0F1-ATP synthase.
  Biophys J, 94, 5053-5064.  
18471428 T.Hornung, R.Ishmukhametov, D.Spetzler, J.Martin, and W.D.Frasch (2008).
Determination of torque generation from the power stroke of Escherichia coli F1-ATPase.
  Biochim Biophys Acta, 1777, 579-582.  
19011636 T.Masaike, F.Koyama-Horibe, K.Oiwa, M.Yoshida, and T.Nishizaka (2008).
Cooperative three-step motions in catalytic subunits of F(1)-ATPase correlate with 80 degrees and 40 degrees substep rotations.
  Nat Struct Mol Biol, 15, 1326-1333.  
19325821 T.Mitsui, and H.Ohshima (2008).
Shear stress transmission model for the flagellar rotary motor.
  Int J Mol Sci, 9, 1595-1620.  
18687036 V.B.Rao, and M.Feiss (2008).
The bacteriophage DNA packaging motor.
  Annu Rev Genet, 42, 647-681.  
18420936 V.E.Galkin, X.Yu, J.Bielnicki, J.Heuser, C.P.Ewing, P.Guerry, and E.H.Egelman (2008).
Divergence of quaternary structures among bacterial flagellar filaments.
  Science, 320, 382-385.  
18386070 V.Tasic, P.Korneti, Z.Gucev, B.Hoppe, N.Blau, and H.I.Cheong (2008).
Atypical presentation of distal renal tubular acidosis in two siblings.
  Pediatr Nephrol, 23, 1177-1181.  
18849995 X.Zhang, and D.B.Wigley (2008).
The 'glutamate switch' provides a link between ATPase activity and ligand binding in AAA+ proteins.
  Nat Struct Mol Biol, 15, 1223-1227.  
18334255 Y.Chen, and P.Gollnick (2008).
Alanine scanning mutagenesis of anti-TRAP (AT) reveals residues involved in binding to TRAP.
  J Mol Biol, 377, 1529-1543.  
17028136 A.Aird, J.Wrachtrup, K.Schulten, and C.Tietz (2007).
Possible pathway for ubiquinone shuttling in Rhodospirillum rubrum revealed by molecular dynamics simulation.
  Biophys J, 92, 23-33.  
17662937 A.E.Senior (2007).
ATP synthase: motoring to the finish line.
  Cell, 130, 220-221.  
17680764 A.N.Malyan (2007).
Interaction of ADP and ATP with noncatalytic sites of isolated and membrane-bound chloroplast coupling factor CF1.
  Biochemistry (Mosc), 72, 728-734.  
17697996 A.Stocker, S.Keis, J.Vonck, G.M.Cook, and P.Dimroth (2007).
The structural basis for unidirectional rotation of thermoalkaliphilic F1-ATPase.
  Structure, 15, 904-914.
PDB code: 2qe7
17255937 A.Yamagata, and J.A.Tainer (2007).
Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.
  EMBO J, 26, 878-890.
PDB codes: 2oap 2oaq
17904517 B.A.Feniouk, A.Rebecchi, D.Giovannini, S.Anefors, A.Y.Mulkidjanian, W.Junge, P.Turina, and B.A.Melandri (2007).
Met23Lys mutation in subunit gamma of F(O)F(1)-ATP synthase from Rhodobacter capsulatus impairs the activation of ATP hydrolysis by protonmotive force.
  Biochim Biophys Acta, 1767, 1319-1330.  
17492370 B.R.Francis, K.H.White, and P.E.Thorsness (2007).
Mutations in the Atp1p and Atp3p subunits of yeast ATP synthase differentially affect respiration and fermentation in Saccharomyces cerevisiae.
  J Bioenerg Biomembr, 39, 127-144.  
17287347 C.Hyeon, and J.N.Onuchic (2007).
Internal strain regulates the nucleotide binding site of the kinesin leading head.
  Proc Natl Acad Sci U S A, 104, 2175-2180.  
17664130 D.A.Butterfield, T.Reed, S.F.Newman, and R.Sultana (2007).
Roles of amyloid beta-peptide-associated oxidative stress and brain protein modifications in the pathogenesis of Alzheimer's disease and mild cognitive impairment.
  Free Radic Biol Med, 43, 658-677.  
17506638 D.C.Wallace (2007).
Why do we still have a maternally inherited mitochondrial DNA? Insights from evolutionary medicine.
  Annu Rev Biochem, 76, 781-821.  
17660748 D.Drapier, B.Rimbault, O.Vallon, F.A.Wollman, and Y.Choquet (2007).
Intertwined translational regulations set uneven stoichiometry of chloroplast ATP synthase subunits.
  EMBO J, 26, 3581-3591.  
17434874 D.G.McMillan, S.Keis, P.Dimroth, and G.M.Cook (2007).
A specific adaptation in the a subunit of thermoalkaliphilic F1FO-ATP synthase enables ATP synthesis at high pH but not at neutral pH values.
  J Biol Chem, 282, 17395-17404.  
18030381 D.Spetzler, J.York, C.Dobbin, J.Martin, R.Ishmukhametov, L.Day, J.Yu, H.Kang, K.Porter, T.Hornung, and W.D.Frasch (2007).
Recent developments of bio-molecular motors as on-chip devices using single molecule techniques.
  Lab Chip, 7, 1633-1643.  
17703470 E.Bisetto, F.Di Pancrazio, M.P.Simula, I.Mavelli, and G.Lippe (2007).
Mammalian ATPsynthase monomer versus dimer profiled by blue native PAGE and activity stain.
  Electrophoresis, 28, 3178-3185.  
17286560 G.D.Clark-Walker (2007).
The F1-ATPase inhibitor Inh1 (IF1) affects suppression of mtDNA loss-lethality in Kluyveromyces lactis.
  FEMS Yeast Res, 7, 665-674.  
17766252 H.Ren, S.X.Dou, P.Rigolet, Y.Yang, P.Y.Wang, M.Amor-Gueret, and X.G.Xi (2007).
The arginine finger of the Bloom syndrome protein: its structural organization and its role in energy coupling.
  Nucleic Acids Res, 35, 6029-6041.  
17581881 H.Yagi, N.Kajiwara, H.Tanaka, T.Tsukihara, Y.Kato-Yamada, M.Yoshida, and H.Akutsu (2007).
Structures of the thermophilic F1-ATPase epsilon subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1.
  Proc Natl Acad Sci U S A, 104, 11233-11238.
PDB codes: 2e5t 2e5u 2e5y
18003896 H.Z.Mao, and J.Weber (2007).
Identification of the betaTP site in the x-ray structure of F1-ATPase as the high-affinity catalytic site.
  Proc Natl Acad Sci U S A, 104, 18478-18483.  
17925435 I.Smirnova, V.Kasho, J.Y.Choe, C.Altenbach, W.L.Hubbell, and H.R.Kaback (2007).
Sugar binding induces an outward facing conformation of LacY.
  Proc Natl Acad Sci U S A, 104, 16504-16509.  
17599913 I.Tato, I.Matilla, I.Arechaga, S.Zunzunegui, la Cruz, and E.Cabezon (2007).
The ATPase activity of the DNA transporter TrwB is modulated by protein TrwA: implications for a common assembly mechanism of DNA translocating motors.
  J Biol Chem, 282, 25569-25576.  
17698806 J.R.Gledhill, M.G.Montgomery, A.G.Leslie, and J.E.Walker (2007).
Mechanism of inhibition of bovine F1-ATPase by resveratrol and related polyphenols.
  Proc Natl Acad Sci U S A, 104, 13632-13637.
PDB codes: 2jiz 2jj1 2jj2
17895376 J.R.Gledhill, M.G.Montgomery, A.G.Leslie, and J.E.Walker (2007).
How the regulatory protein, IF(1), inhibits F(1)-ATPase from bovine mitochondria.
  Proc Natl Acad Sci U S A, 104, 15671-15676.
PDB code: 2v7q
18058004 J.York, D.Spetzler, T.Hornung, R.Ishmukhametov, J.Martin, and W.D.Frasch (2007).
Abundance of Escherichia coli F(1)-ATPase molecules observed to rotate via single-molecule microscopy with gold nanorod probes.
  J Bioenerg Biomembr, 39, 435-439.  
17355871 K.A.Satyshur, G.A.Worzalla, L.S.Meyer, E.K.Heiniger, K.G.Aukema, A.M.Misic, and K.T.Forest (2007).
Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.
  Structure, 15, 363-376.
PDB codes: 2ewv 2eww 2eyu 2gsz
17662945 K.Adachi, K.Oiwa, T.Nishizaka, S.Furuike, H.Noji, H.Itoh, M.Yoshida, and K.Kinosita (2007).
Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation.
  Cell, 130, 309-321.  
17202259 K.Imada, T.Minamino, A.Tahara, and K.Namba (2007).
Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits.
  Proc Natl Acad Sci U S A, 104, 485-490.
PDB code: 2dpy
17614964 K.Y.Pisa, H.Huber, M.Thomm, and V.Müller (2007).
A sodium ion-dependent A1AO ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus.
  FEBS J, 274, 3928-3938.  
17697991 M.A.Bianchet, and L.M.Amzel (2007).
Making the right moves.
  Structure, 15, 885-886.  
17589859 M.Jost, S.Weigelt, T.Huber, Z.Majer, J.C.Greie, K.Altendorf, and N.Sewald (2007).
Synthesis, and structural and biological studies of efrapeptin C analogues.
  Chem Biodivers, 4, 1170-1182.  
17311124 M.Kawamoto, T.Aoki, and T.Wada (2007).
Light-driven twisting behaviour of chiral cyclic compounds.
  Chem Commun (Camb), (), 930-932.  
17228330 M.M.Cox (2007).
Motoring along with the bacterial RecA protein.
  Nat Rev Mol Cell Biol, 8, 127-138.  
17517893 M.Nakanishi-Matsui, S.Kashiwagi, T.Ubukata, A.Iwamoto-Kihara, Y.Wada, and M.Futai (2007).
Rotational catalysis of Escherichia coli ATP synthase F1 sector. Stochastic fluctuation and a key domain of the beta subunit.
  J Biol Chem, 282, 20698-20704.  
17506634 M.R.Singleton, M.S.Dillingham, and D.B.Wigley (2007).
Structure and mechanism of helicases and nucleic acid translocases.
  Annu Rev Biochem, 76, 23-50.  
17261589 M.Rak, E.Tetaud, F.Godard, I.Sagot, B.Salin, S.Duvezin-Caubet, P.P.Slonimski, J.Rytka, and J.P.di Rago (2007).
Yeast cells lacking the mitochondrial gene encoding the ATP synthase subunit 6 exhibit a selective loss of complex IV and unusual mitochondrial morphology.
  J Biol Chem, 282, 10853-10864.  
17855363 M.Rak, E.Tetaud, S.Duvezin-Caubet, N.Ezkurdia, M.Bietenhader, J.Rytka, and J.P.di Rago (2007).
A yeast model of the neurogenic ataxia retinitis pigmentosa (NARP) T8993G mutation in the mitochondrial ATP synthase-6 gene.
  J Biol Chem, 282, 34039-34047.  
17350959 M.W.Bowler, M.G.Montgomery, A.G.Leslie, and J.E.Walker (2007).
Ground state structure of F1-ATPase from bovine heart mitochondria at 1.9 A resolution.
  J Biol Chem, 282, 14238-14242.
PDB code: 2jdi
17557793 N.Buzhynskyy, P.Sens, V.Prima, J.N.Sturgis, and S.Scheuring (2007).
Rows of ATP synthase dimers in native mitochondrial inner membranes.
  Biophys J, 93, 2870-2876.  
17766379 O.Y.Dmitriev, and R.H.Fillingame (2007).
The rigid connecting loop stabilizes hairpin folding of the two helices of the ATP synthase subunit c.
  Protein Sci, 16, 2118-2122.  
18175209 P.L.Pedersen (2007).
Transport ATPases into the year 2008: a brief overview related to types, structures, functions and roles in health and disease.
  J Bioenerg Biomembr, 39, 349-355.  
17237797 R.Zarivach, M.Vuckovic, W.Deng, B.B.Finlay, and N.C.Strynadka (2007).
Structural analysis of a prototypical ATPase from the type III secretion system.
  Nat Struct Mol Biol, 14, 131-137.
PDB codes: 2obl 2obm
17386269 S.Sun, K.Kondabagil, P.M.Gentz, M.G.Rossmann, and V.B.Rao (2007).
The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids.
  Mol Cell, 25, 943-949.
PDB codes: 2o0h 2o0j 2o0k
17391015 S.Vucetic, H.Xie, L.M.Iakoucheva, C.J.Oldfield, A.K.Dunker, Z.Obradovic, and V.N.Uversky (2007).
Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions.
  J Proteome Res, 6, 1899-1916.  
17721548 T.Ariga, E.Muneyuki, and M.Yoshida (2007).
F1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits.
  Nat Struct Mol Biol, 14, 841-846.  
17645441 T.Meier, N.Morgner, D.Matthies, D.Pogoryelov, S.Keis, G.M.Cook, P.Dimroth, and B.Brutschy (2007).
A tridecameric c ring of the adenosine triphosphate (ATP) synthase from the thermoalkaliphilic Bacillus sp. strain TA2.A1 facilitates ATP synthesis at low electrochemical proton potential.
  Mol Microbiol, 65, 1181-1192.  
17360523 V.V.Bulygin, and Y.M.Milgrom (2007).
Studies of nucleotide binding to the catalytic sites of Escherichia coli betaY331W-F1-ATPase using fluorescence quenching.
  Proc Natl Acad Sci U S A, 104, 4327-4331.  
17292915 W.Xie, C.Zhou, and R.H.Huang (2007).
Structure of tRNA dimethylallyltransferase: RNA modification through a channel.
  J Mol Biol, 367, 872-881.
PDB codes: 3crm 3crq 3crr
17373706 W.Zheng, J.C.Liao, B.R.Brooks, and S.Doniach (2007).
Toward the mechanism of dynamical couplings and translocation in hepatitis C virus NS3 helicase using elastic network model.
  Proteins, 67, 886-896.  
17480203 X.Huo, D.Su, A.Wang, Y.Zhai, J.Xu, X.Li, M.Bartlam, F.Sun, and Z.Rao (2007).
Preliminary molecular characterization and crystallization of mitochondrial respiratory complex II from porcine heart.
  FEBS J, 274, 1524-1529.  
19404457 Y.Ishii, and T.Yanagida (2007).
How single molecule detection measures the dynamic actions of life.
  HFSP J, 1, 15-29.  
17244612 Y.Wang, U.Singh, and D.M.Mueller (2007).
Mitochondrial genome integrity mutations uncouple the yeast Saccharomyces cerevisiae ATP synthase.
  J Biol Chem, 282, 8228-8236.  
17176112 A.E.Senior, A.Muharemagi─ç, and S.Wilke-Mounts (2006).
Assembly of the stator in Escherichia coli ATP synthase. Complexation of alpha subunit with other F1 subunits is prerequisite for delta subunit binding to the N-terminal region of alpha.
  Biochemistry, 45, 15893-15902.  
16855312 A.Liljas (2006).
On the complementarity of methods in structural biology.
  Acta Crystallogr D Biol Crystallogr, 62, 941-945.  
16642267 A.W.Muller, and D.Schulze-Makuch (2006).
Thermal energy and the origin of life.
  Orig Life Evol Biosph, 36, 177-189.  
17035244 B.E.Schwem, and R.H.Fillingame (2006).
Cross-linking between helices within subunit a of Escherichia coli ATP synthase defines the transmembrane packing of a four-helix bundle.
  J Biol Chem, 281, 37861-37867.  
16531409 C.Chen, A.K.Saxena, W.N.Simcoke, D.N.Garboczi, P.L.Pedersen, and Y.H.Ko (2006).
Mitochondrial ATP synthase. Crystal structure of the catalytic F1 unit in a vanadate-induced transition-like state and implications for mechanism.
  J Biol Chem, 281, 13777-13783.
PDB code: 2f43
16541253 C.Oswald, I.B.Holland, and L.Schmitt (2006).
The motor domains of ABC-transporters. What can structures tell us?
  Naunyn Schmiedebergs Arch Pharmacol, 372, 385-399.  
16427007 D.J.Crampton, S.Mukherjee, and C.C.Richardson (2006).
DNA-induced switch from independent to sequential dTTP hydrolysis in the bacteriophage T7 DNA helicase.
  Mol Cell, 21, 165-174.  
17081977 E.Skordalakes, and J.M.Berger (2006).
Structural insights into RNA-dependent ring closure and ATPase activation by the Rho termination factor.
  Cell, 127, 553-564.
PDB code: 2ht1
16991168 F.Grandi, M.Sandal, G.Guarguaglini, E.Capriotti, R.Casadio, and B.Samorì (2006).
Hierarchical mechanochemical switches in angiostatin.
  Chembiochem, 7, 1774-1782.  
16487063 F.Qian, D.Wei, J.Liu, and S.Yang (2006).
Molecular model and ATPase activity of carboxyl-terminal nucleotide binding domain from human P-glycoprotein.
  Biochemistry (Mosc), 71, S18.  
17079132 F.X.Gomis-Rüth, and M.Coll (2006).
Cut and move: protein machinery for DNA processing in bacterial conjugation.
  Curr Opin Struct Biol, 16, 744-752.  
16832703 G.del Riego, L.M.Casano, M.Martín, and B.Sabater (2006).
Multiple phosphorylation sites in the beta subunit of thylakoid ATP synthase.
  Photosynth Res, 89, 11-18.  
17050529 H.Imamura, S.Funamoto, M.Yoshida, and K.Yokoyama (2006).
Reconstitution in vitro of V1 complex of Thermus thermophilus V-ATPase revealed that ATP binding to the A subunit is crucial for V1 formation.
  J Biol Chem, 281, 38582-38591.  
16977308 H.Konno, T.Murakami-Fuse, F.Fujii, F.Koyama, H.Ueoka-Nakanishi, C.G.Pack, M.Kinjo, and T.Hisabori (2006).
The regulator of the F1 motor: inhibition of rotation of cyanobacterial F1-ATPase by the epsilon subunit.
  EMBO J, 25, 4596-4604.  
16895914 H.S.Samra, F.Gao, F.He, E.Hoang, Z.Chen, P.A.Gegenheimer, C.L.Berrie, and M.L.Richter (2006).
Structural analysis of the regulatory dithiol-containing domain of the chloroplast ATP synthase gamma subunit.
  J Biol Chem, 281, 31041-31049.  
16828083 H.Z.Mao, W.D.Gray, and J.Weber (2006).
Does F1-ATPase have a catalytic site that preferentially binds MgADP?
  FEBS Lett, 580, 4131-4135.  
16935879 I.Donmez, and S.S.Patel (2006).
Mechanisms of a ring shaped helicase.
  Nucleic Acids Res, 34, 4216-4224.  
  16754973 J.A.Silvester, V.K.Dickson, M.J.Runswick, A.G.Leslie, and J.E.Walker (2006).
The expression, purification, crystallization and preliminary X-ray analysis of a subcomplex of the peripheral stalk of ATP synthase from bovine mitochondria.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 62, 530-533.  
16937356 J.Das (2006).
The role of mitochondrial respiration in physiological and evolutionary adaptation.
  Bioessays, 28, 890-901.  
16847846 J.Xiao, A.M.Lee, and S.F.Singleton (2006).
Direct evaluation of a kinetic model for RecA-mediated DNA-strand exchange: the importance of nucleic acid dynamics and entropy during homologous genetic recombination.
  Chembiochem, 7, 1265-1278.  
16258036 K.Shimabukuro, E.Muneyuki, and M.Yoshida (2006).
An alternative reaction pathway of F1-ATPase suggested by rotation without 80 degrees/40 degrees substeps of a sluggish mutant at low ATP.
  Biophys J, 90, 1028-1032.  
16971639 L.Balsalobre, A.Hernández-Madrid, D.Llull, A.J.Martín-Galiano, E.García, A.Fenoll, and la Campa (2006).
Molecular characterization of disease-associated streptococci of the mitis group that are optochin susceptible.
  J Clin Microbiol, 44, 4163-4171.  
16826229 L.F.Cavanaugh, A.G.Palmer, L.M.Gierasch, and J.F.Hunt (2006).
Disorder breathes life into a DEAD motor.
  Nat Struct Mol Biol, 13, 566-569.  
16946072 M.A.Seeger, A.Schiefner, T.Eicher, F.Verrey, K.Diederichs, and K.M.Pos (2006).
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism.
  Science, 313, 1295-1298.
PDB codes: 2gif 2hrt
16260786 M.C.Lane, P.W.O'Toole, and S.A.Moore (2006).
Molecular basis of the interaction between the flagellar export proteins FliI and FliH from Helicobacter pylori.
  J Biol Chem, 281, 508-517.  
16698789 M.D.Hossain, S.Furuike, Y.Maki, K.Adachi, M.Y.Ali, M.Huq, H.Itoh, M.Yoshida, and K.Kinosita (2006).
The rotor tip inside a bearing of a thermophilic F1-ATPase is dispensable for torque generation.
  Biophys J, 90, 4195-4203.  
16962966 M.Dittrich, and K.Schulten (2006).
PcrA helicase, a prototype ATP-driven molecular motor.
  Structure, 14, 1345-1353.  
17205111 M.Martínez-Diez, G.Santamaría, A.D.Ortega, and J.M.Cuezva (2006).
Biogenesis and dynamics of mitochondria during the cell cycle: significance of 3'UTRs.
  PLoS ONE, 1, e107.  
16352612 M.Nakanishi-Matsui, S.Kashiwagi, H.Hosokawa, D.J.Cipriano, S.D.Dunn, Y.Wada, and M.Futai (2006).
Stochastic high-speed rotation of Escherichia coli ATP synthase F1 sector: the epsilon subunit-sensitive rotation.
  J Biol Chem, 281, 4126-4131.  
16905113 M.R.Gunner, J.Mao, Y.Song, and J.Kim (2006).
Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.
  Biochim Biophys Acta, 1757, 942-968.  
16929099 M.W.Bowler, M.G.Montgomery, A.G.Leslie, and J.E.Walker (2006).
Reproducible improvements in order and diffraction limit of crystals of bovine mitochondrial F(1)-ATPase by controlled dehydration.
  Acta Crystallogr D Biol Crystallogr, 62, 991-995.  
16728506 M.W.Bowler, M.G.Montgomery, A.G.Leslie, and J.E.Walker (2006).
How azide inhibits ATP hydrolysis by the F-ATPases.
  Proc Natl Acad Sci U S A, 103, 8646-8649.
PDB codes: 2ck3 2lcd
16567655 N.Koga, and S.Takada (2006).
Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase.
  Proc Natl Acad Sci U S A, 103, 5367-5372.  
16607397 P.Dimroth, C.von Ballmoos, and T.Meier (2006).
Catalytic and mechanical cycles in F-ATP synthases. Fourth in the Cycles Review Series.
  EMBO Rep, 7, 276-282.  
16892318 P.Fu (2006).
A perspective of synthetic biology: assembling building blocks for novel functions.
  Biotechnol J, 1, 690-699.  
17033718 P.Xie, S.X.Dou, and P.Y.Wang (2006).
Model for unidirectional movement of axonemal and cytoplasmic dynein molecules.
  Acta Biochim Biophys Sin (Shanghai), 38, 711-724.  
16718405 Q.Ren, Y.P.Zhao, J.C.Yue, and Y.B.Cui (2006).
Biological application of multi-component nanowires in hybrid devices powered by F1-ATPase motors.
  Biomed Microdevices, 8, 201-208.  
16365880 R.Carrozzo, I.Wittig, F.M.Santorelli, E.Bertini, S.Hofmann, U.Brandt, and H.Schägger (2006).
Subcomplexes of human ATP synthase mark mitochondrial biosynthesis disorders.
  Ann Neurol, 59, 265-275.  
16835760 R.Hedrich, and I.Marten (2006).
30-year progress of membrane transport in plants.
  Planta, 224, 725-739.  
16949097 R.Jothi, P.F.Cherukuri, A.Tasneem, and T.M.Przytycka (2006).
Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.
  J Mol Biol, 362, 861-875.  
16816177 S.A.Ferguson, S.Keis, and G.M.Cook (2006).
Biochemical and molecular characterization of a Na+-translocating F1Fo-ATPase from the thermoalkaliphilic bacterium Clostridium paradoxum.
  J Bacteriol, 188, 5045-5054.  
16824099 S.A.Müller, C.Pozidis, R.Stone, C.Meesters, M.Chami, A.Engel, A.Economou, and H.Stahlberg (2006).
Double hexameric ring assembly of the type III protein translocase ATPase HrcN.
  Mol Microbiol, 61, 119-125.  
16608846 S.Duvezin-Caubet, M.Rak, L.Lefebvre-Legendre, E.Tetaud, N.Bonnefoy, and J.P.di Rago (2006).
A "petite obligate" mutant of Saccharomyces cerevisiae: functional mtDNA is lethal in cells lacking the delta subunit of mitochondrial F1-ATPase.
  J Biol Chem, 281, 16305-16313.  
16714384 S.Goswami, G.Dhar, S.Mukherjee, B.Mahata, S.Chatterjee, P.Home, and S.Adhya (2006).
A bifunctional tRNA import receptor from Leishmania mitochondria.
  Proc Natl Acad Sci U S A, 103, 8354-8359.  
16735512 S.Goswami, and S.Adhya (2006).
The alpha-subunit of Leishmania F1 ATP synthase hydrolyzes ATP in presence of tRNA.
  J Biol Chem, 281, 18914-18917.  
16707672 S.Keis, A.Stocker, P.Dimroth, and G.M.Cook (2006).
Inhibition of ATP hydrolysis by thermoalkaliphilic F1Fo-ATP synthase is controlled by the C terminus of the epsilon subunit.
  J Bacteriol, 188, 3796-3804.  
17009955 S.V.Ponomarenko (2006).
Biochemical characteristics of Escherichia coli ATP synthase with insulin peptide A fused to the globular part of the gamma-subunit.
  Biochemistry (Mosc), 71, 1006-1012.  
16714340 T.Geyer, and V.Helms (2006).
Reconstruction of a kinetic model of the chromatophore vesicles from Rhodobacter sphaeroides.
  Biophys J, 91, 927-937.  
16533815 T.H.Brondijk, G.I.van Boxel, O.C.Mather, P.G.Quirk, S.A.White, and J.B.Jackson (2006).
The role of invariant amino acid residues at the hydride transfer site of proton-translocating transhydrogenase.
  J Biol Chem, 281, 13345-13354.
PDB codes: 2fr8 2frd 2fsv
16765891 V.E.Galkin, Y.Wu, X.P.Zhang, X.Qian, Y.He, X.Yu, W.D.Heyer, Y.Luo, and E.H.Egelman (2006).
The Rad51/RadA N-terminal domain activates nucleoprotein filament ATPase activity.
  Structure, 14, 983-992.
PDB code: 2gdj
16791136 V.K.Dickson, J.A.Silvester, I.M.Fearnley, A.G.Leslie, and J.E.Walker (2006).
On the structure of the stator of the mitochondrial ATP synthase.
  EMBO J, 25, 2911-2918.
PDB code: 2cly
17082766 V.Kabaleeswaran, N.Puri, J.E.Walker, A.G.Leslie, and D.M.Mueller (2006).
Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase.
  EMBO J, 25, 5433-5442.
PDB code: 2hld
16627940 Y.Maegawa, H.Morita, D.Iyaguchi, M.Yao, N.Watanabe, and I.Tanaka (2006).
Structure of the catalytic nucleotide-binding subunit A of A-type ATP synthase from Pyrococcus horikoshii reveals a novel domain related to the peripheral stalk.
  Acta Crystallogr D Biol Crystallogr, 62, 483-488.
PDB code: 1vdz
15937281 A.M.Saxena, J.B.Udgaonkar, and G.Krishnamoorthy (2005).
Protein dynamics control proton transfer from bulk solvent to protein interior: a case study with a green fluorescent protein.
  Protein Sci, 14, 1787-1799.  
16336184 A.N.Malyan (2005).
Light-dependent incorporation of adenine nucleotide into noncatalytic sites of chloroplast ATP synthase.
  Biochemistry (Mosc), 70, 1245-1250.  
15999422 C.Abad-Zapatero, and M.G.Replacement (2005).
Homage to Prof. M.G. Replacement: a celebration of structural biology at Purdue University.
  Structure, 13, 845-848.  
16014621 C.Aldridge, and S.G.Møller (2005).
The plastid division protein AtMinD1 is a Ca2+-ATPase stimulated by AtMinE1.
  J Biol Chem, 280, 31673-31678.  
15975925 C.Schwimmer, L.Lefebvre-Legendre, M.Rak, A.Devin, P.P.Slonimski, J.P.di Rago, and M.Rigoulet (2005).
Increasing mitochondrial substrate-level phosphorylation can rescue respiratory growth of an ATP synthase-deficient yeast.
  J Biol Chem, 280, 30751-30759.  
15970598 D.M.Bustos, and J.Velours (2005).
The modification of the conserved GXXXG motif of the membrane-spanning segment of subunit g destabilizes the supramolecular species of yeast ATP synthase.
  J Biol Chem, 280, 29004-29010.  
16170308 D.Pogoryelov, J.Yu, T.Meier, J.Vonck, P.Dimroth, and D.J.Muller (2005).
The c15 ring of the Spirulina platensis F-ATP synthase: F1/F0 symmetry mismatch is not obligatory.
  EMBO Rep, 6, 1040-1044.  
15642265 E.Skordalakes, A.P.Brogan, B.S.Park, H.Kohn, and J.M.Berger (2005).
Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin.
  Structure, 13, 99.
PDB codes: 1xpo 1xpr 1xpu
16729054 F.Naef (2005).
Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria.
  Mol Syst Biol, 1, 2005.0019.  
15989954 F.Sun, X.Huo, Y.Zhai, A.Wang, J.Xu, D.Su, M.Bartlam, and Z.Rao (2005).
Crystal structure of mitochondrial respiratory membrane protein complex II.
  Cell, 121, 1043-1057.
PDB codes: 1zoy 1zp0
15902274 G.I.Karras, G.Kustatscher, H.R.Buhecha, M.D.Allen, C.Pugieux, F.Sait, M.Bycroft, and A.G.Ladurner (2005).
The macro domain is an ADP-ribose binding module.
  EMBO J, 24, 1911-1920.
PDB codes: 2bfq 2bfr
15849185 H.Hosokawa, M.Nakanishi-Matsui, S.Kashiwagi, I.Fujii-Taira, K.Hayashi, A.Iwamoto-Kihara, Y.Wada, and M.Futai (2005).
ATP-dependent rotation of mutant ATP synthases defective in proton transport.
  J Biol Chem, 280, 23797-23801.  
16330761 H.Imamura, M.Takeda, S.Funamoto, K.Shimabukuro, M.Yoshida, and K.Yokoyama (2005).
Rotation scheme of V1-motor is different from that of F1-motor.
  Proc Natl Acad Sci U S A, 102, 17929-17933.  
15668386 H.Ueno, T.Suzuki, K.Kinosita, and M.Yoshida (2005).
ATP-driven stepwise rotation of FoF1-ATP synthase.
  Proc Natl Acad Sci U S A, 102, 1333-1338.  
15919815 I.Tato, S.Zunzunegui, la Cruz, and E.Cabezon (2005).
TrwB, the coupling protein involved in DNA transport during bacterial conjugation, is a DNA-dependent ATPase.
  Proc Natl Acad Sci U S A, 102, 8156-8161.  
15893664 J.Wang (2005).
Recent cyanobacterial Kai protein structures suggest a rotary clock.
  Structure, 13, 735-741.  
16217018 J.Xing, J.C.Liao, and G.Oster (2005).
Making ATP.
  Proc Natl Acad Sci U S A, 102, 16539-16546.  
15889153 J.Zaitseva, S.Jenewein, T.Jumpertz, I.B.Holland, and L.Schmitt (2005).
H662 is the linchpin of ATP hydrolysis in the nucleotide-binding domain of the ABC transporter HlyB.
  EMBO J, 24, 1901-1910.
PDB code: 1xef
15789350 K.Ohnishi, and B.Ono (2005).
Inverted repeat of a large segment unveiled on the right arm of Saccharomyces cerevisiae chromosome II.
  Yeast, 22, 321-336.  
15716275 L.Lefebvre-Legendre, B.Salin, J.Schaëffer, D.Brèthes, A.Dautant, S.H.Ackerman, and J.P.di Rago (2005).
Failure to assemble the alpha 3 beta 3 subcomplex of the ATP synthase leads to accumulation of the alpha and beta subunits within inclusion bodies and the loss of mitochondrial cristae in Saccharomyces cerevisiae.
  J Biol Chem, 280, 18386-18392.  
16306262 M.B.Shevtsov, Y.Chen, P.Gollnick, and A.A.Antson (2005).
Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction.
  Proc Natl Acad Sci U S A, 102, 17600-17605.
PDB code: 2bx9
16691480 M.Dittrich, and K.Schulten (2005).
Zooming in on ATP hydrolysis in F1.
  J Bioenerg Biomembr, 37, 441-444.  
15783858 M.Ikeguchi, J.Ueno, M.Sato, and A.Kidera (2005).
Protein structural change upon ligand binding: linear response theory.
  Phys Rev Lett, 94, 078102.  
15870208 M.Karplus, and J.Kuriyan (2005).
Molecular dynamics and protein function.
  Proc Natl Acad Sci U S A, 102, 6679-6685.  
15812565 M.M.van Duist, M.Albrecht, M.Podswiadek, D.Giachino, T.Lengauer, L.Punzi, and M.De Marchi (2005).
A new CARD15 mutation in Blau syndrome.
  Eur J Hum Genet, 13, 742-747.  
15776236 M.Takeda, H.Katayama, T.Satoh, and T.Mabuchi (2005).
Three copies of the ATP2 gene are arranged in tandem on chromosome X in the yeast Saccharomyces cerevisiae.
  Curr Genet, 47, 265-272.  
15817482 N.Puri, J.Lai-Zhang, S.Meier, and D.M.Mueller (2005).
Expression of bovine F1-ATPase with functional complementation in yeast Saccharomyces cerevisiae.
  J Biol Chem, 280, 22418-22424.  
15626703 N.Sakaki, R.Shimo-Kon, K.Adachi, H.Itoh, S.Furuike, E.Muneyuki, M.Yoshida, and K.Kinosita (2005).
One rotary mechanism for F1-ATPase over ATP concentrations from millimolar down to nanomolar.
  Biophys J, 88, 2047-2056.  
16691464 P.L.Pedersen (2005).
Transport ATPases: structure, motors, mechanism and medicine: a brief overview.
  J Bioenerg Biomembr, 37, 349-357.  
16338404 R.B.Best, Y.G.Chen, and G.Hummer (2005).
Slow protein conformational dynamics from multiple experimental structures: the helix/sheet transition of arc repressor.
  Structure, 13, 1755-1763.  
16203732 R.Iino, T.Murakami, S.Iizuka, Y.Kato-Yamada, T.Suzuki, and M.Yoshida (2005).
Real-time monitoring of conformational dynamics of the epsilon subunit in F1-ATPase.
  J Biol Chem, 280, 40130-40134.  
16691482 R.Iino, Y.Rondelez, M.Yoshida, and H.Noji (2005).
Chemomechanical coupling in single-molecule F-type ATP synthase.
  J Bioenerg Biomembr, 37, 451-454.  
15703177 R.J.Browne, and B.L.Stitt (2005).
Active site occupancy required for catalytic cooperativity by Escherichia coli transcription termination factor Rho.
  J Biol Chem, 280, 13300-13303.  
15703178 R.J.Browne, E.W.Barr, and B.L.Stitt (2005).
Catalytic cooperativity among subunits of Escherichia coli transcription termination factor Rho. Kinetics and substrate structural requirements.
  J Biol Chem, 280, 13292-13299.  
16341776 S.Contessi, F.Haraux, I.Mavelli, and G.Lippe (2005).
Identification of a conserved calmodulin-binding motif in the sequence of F0F1 ATPsynthase inhibitor protein.
  J Bioenerg Biomembr, 37, 317-326.  
15951435 T.Inoue, and M.Forgac (2005).
Cysteine-mediated cross-linking indicates that subunit C of the V-ATPase is in close proximity to subunits E and G of the V1 domain and subunit a of the V0 domain.
  J Biol Chem, 280, 27896-27903.  
16691471 T.Inoue, Y.Wang, K.Jefferies, J.Qi, A.Hinton, and M.Forgac (2005).
Structure and regulation of the V-ATPases.
  J Bioenerg Biomembr, 37, 393-398.  
16262688 T.Meier, J.Yu, T.Raschle, F.Henzen, P.Dimroth, and D.J.Muller (2005).
Structural evidence for a constant c11 ring stoichiometry in the sodium F-ATP synthase.
  FEBS J, 272, 5474-5483.  
15860619 T.Meier, P.Polzer, K.Diederichs, W.Welte, and P.Dimroth (2005).
Structure of the rotor ring of F-Type Na+-ATPase from Ilyobacter tartaricus.
  Science, 308, 659-662.
PDB code: 1yce
15640141 V.Corvest, C.Sigalat, R.Venard, P.Falson, D.M.Mueller, and F.Haraux (2005).
The binding mechanism of the yeast F1-ATPase inhibitory peptide: role of catalytic intermediates and enzyme turnover.
  J Biol Chem, 280, 9927-9936.  
15758075 Y.Hirono-Hara, K.Ishizuka, K.Kinosita, M.Yoshida, and H.Noji (2005).
Activation of pausing F1 motor by external force.
  Proc Natl Acad Sci U S A, 102, 4288-4293.  
16172372 Y.M.Milgrom, and R.L.Cross (2005).
Rapid hydrolysis of ATP by mitochondrial F1-ATPase correlates with the filling of the second of three catalytic sites.
  Proc Natl Acad Sci U S A, 102, 13831-13836.  
15716957 Y.Rondelez, G.Tresset, T.Nakashima, Y.Kato-Yamada, H.Fujita, S.Takeuchi, and H.Noji (2005).
Highly coupled ATP synthesis by F1-ATPase single molecules.
  Nature, 433, 773-777.  
15537659 Y.Wu, X.Qian, Y.He, I.A.Moya, and Y.Luo (2005).
Crystal structure of an ATPase-active form of Rad51 homolog from Methanococcus voltae. Insights into potassium dependence.
  J Biol Chem, 280, 722-728.
PDB code: 1xu4
15752355 Z.L.Ni, H.Dong, and J.M.Wei (2005).
N-terminal deletion of the gamma subunit affects the stabilization and activity of chloroplast ATP synthase.
  FEBS J, 272, 1379-1385.  
14990464 A.Aksimentiev, I.A.Balabin, R.H.Fillingame, and K.Schulten (2004).
Insights into the molecular mechanism of rotation in the Fo sector of ATP synthase.
  Biophys J, 86, 1332-1344.  
15235592 A.B.Conway, T.W.Lynch, Y.Zhang, G.S.Fortin, C.W.Fung, L.S.Symington, and P.A.Rice (2004).
Crystal structure of a Rad51 filament.
  Nat Struct Mol Biol, 11, 791-796.
PDB code: 1szp
15693622 A.H.Farrell, K.A.Hohenstein, and D.H.Shain (2004).
Molecular adaptation in the ice worm, Mesenchytraeus solifugus: divergence of energetic-associated genes.
  J Mol Evol, 59, 666-673.  
15166242 C.Chen, Y.Ko, M.Delannoy, S.J.Ludtke, W.Chiu, and P.L.Pedersen (2004).
Mitochondrial ATP synthasome: three-dimensional structure by electron microscopy of the ATP synthase in complex formation with carriers for Pi and ADP/ATP.
  J Biol Chem, 279, 31761-31768.  
15255774 C.Mavroidis, A.Dubey, and M.L.Yarmush (2004).
Molecular machines.
  Annu Rev Biomed Eng, 6, 363-395.  
15339903 C.Motz, T.Hornung, M.Kersten, D.T.McLachlin, S.D.Dunn, J.G.Wise, and P.D.Vogel (2004).
The subunit b dimer of the FOF1-ATP synthase: interaction with F1-ATPase as deduced by site-specific spin-labeling.
  J Biol Chem, 279, 49074-49081.  
15572782 C.P.Barrett, B.A.Hall, and M.E.Noble (2004).
Dynamite: a simple way to gain insight into protein motions.
  Acta Crystallogr D Biol Crystallogr, 60, 2280-2287.  
15277681 C.von Ballmoos, J.Brunner, and P.Dimroth (2004).
The ion channel of F-ATP synthase is the target of toxic organotin compounds.
  Proc Natl Acad Sci U S A, 101, 11239-11244.  
15454080 D.Gai, R.Zhao, D.Li, C.V.Finkielstein, and X.S.Chen (2004).
Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen.
  Cell, 119, 47-60.
PDB codes: 1svl 1svm 1svo
15070725 D.J.Crampton, S.Guo, D.E.Johnson, and C.C.Richardson (2004).
The arginine finger of bacteriophage T7 gene 4 helicase: role in energy coupling.
  Proc Natl Acad Sci U S A, 101, 4373-4378.  
15272171 D.M.Mueller, N.Puri, V.Kabaleeswaran, C.Terry, A.G.Leslie, and J.E.Walker (2004).
Crystallization and preliminary crystallographic studies of the mitochondrial F1-ATPase from the yeast Saccharomyces cerevisiae.
  Acta Crystallogr D Biol Crystallogr, 60, 1441-1444.  
15502299 E.J.Milner-White, J.W.Nissink, F.H.Allen, and W.J.Duddy (2004).
Recurring main-chain anion-binding motifs in short polypeptides: nests.
  Acta Crystallogr D Biol Crystallogr, 60, 1935-1942.  
15377674 F.Hayashi, N.Itoh, T.Uzumaki, R.Iwase, Y.Tsuchiya, H.Yamakawa, M.Morishita, K.Onai, S.Itoh, and M.Ishiura (2004).
Roles of two ATPase-motif-containing domains in cyanobacterial circadian clock protein KaiC.
  J Biol Chem, 279, 52331-52337.  
15262977 G.Arselin, J.Vaillier, B.Salin, J.Schaeffer, M.F.Giraud, A.Dautant, D.Brèthes, and J.Velours (2004).
The modulation in subunits e and g amounts of yeast ATP synthase modifies mitochondrial cristae morphology.
  J Biol Chem, 279, 40392-40399.  
15326176 G.Tombline, L.A.Bartholomew, G.A.Tyndall, K.Gimi, I.L.Urbatsch, and A.E.Senior (2004).
Properties of P-glycoprotein with mutations in the "catalytic carboxylate" glutamate residues.
  J Biol Chem, 279, 46518-46526.  
14963028 H.Imamura, C.Ikeda, M.Yoshida, and K.Yokoyama (2004).
The F subunit of Thermus thermophilus V1-ATPase promotes ATPase activity but is not necessary for rotation.
  J Biol Chem, 279, 18085-18090.  
15028675 H.J.Yeo, and G.Waksman (2004).
Unveiling molecular scaffolds of the type IV secretion system.
  J Bacteriol, 186, 1919-1926.  
14747461 H.Ueoka-Nakanishi, Y.Nakanishi, H.Konno, K.Motohashi, D.Bald, and T.Hisabori (2004).
Inverse regulation of rotation of F1-ATPase by the mutation at the regulatory region on the gamma subunit of chloroplast ATP synthase.
  J Biol Chem, 279, 16272-16277.  
15125765 I.Sherameti, B.Shahollari, M.Landsberger, M.Westermann, G.Cherepneva, V.Kusnetsov, and R.Oelmüller (2004).
Cytokinin stimulates polyribosome loading of nuclear-encoded mRNAs for the plastid ATP synthase in etioplasts of Lupinus luteus: the complex accumulates in the inner-envelope membrane with the CF(1) moiety located towards the stromal space.
  Plant J, 38, 578-593.  
14699168 J.A.Roberts, and R.J.Evans (2004).
ATP binding at human P2X1 receptors. Contribution of aromatic and basic amino acids revealed using mutagenesis and partial agonists.
  J Biol Chem, 279, 9043-9055.  
14717962 J.H.Geiger, and S.E.Cnudde (2004).
What the structure of angiostatin may tell us about its mechanism of action.
  J Thromb Haemost, 2, 23-34.  
15240828 J.Liu, and B.Rost (2004).
Sequence-based prediction of protein domains.
  Nucleic Acids Res, 32, 3522-3530.  
14722065 J.Weber, S.Wilke-Mounts, S.Nadanaciva, and A.E.Senior (2004).
Quantitative determination of direct binding of b subunit to F1 in Escherichia coli F1F0-ATP synthase.
  J Biol Chem, 279, 11253-11258.  
15139813 K.Kinosita, K.Adachi, and H.Itoh (2004).
Rotation of F1-ATPase: how an ATP-driven molecular machine may work.
  Annu Rev Biophys Biomol Struct, 33, 245-268.  
14730350 M.Diez, B.Zimmermann, M.Börsch, M.König, E.Schweinberger, S.Steigmiller, R.Reuter, S.Felekyan, V.Kudryavtsev, C.A.Seidel, and P.Gräber (2004).
Proton-powered subunit rotation in single membrane-bound F0F1-ATP synthase.
  Nat Struct Mol Biol, 11, 135-141.  
15315950 M.Dittrich, S.Hayashi, and K.Schulten (2004).
ATP hydrolysis in the betaTP and betaDP catalytic sites of F1-ATPase.
  Biophys J, 87, 2954-2967.  
15118237 M.Futai, G.H.Sun-Wada, and Y.Wada (2004).
Proton pumping ATPases and diverse inside-acidic compartments.
  Yakugaku Zasshi, 124, 243-260.  
15128305 M.Galkin, R.Venard, J.Vaillier, J.Velours, and F.Haraux (2004).
Functional transitions of F0F1-ATPase mediated by the inhibitory peptide IF1 in yeast coupled submitochondrial particles.
  Eur J Biochem, 271, 1963-1970.  
15093841 M.Karplus, and Y.Q.Gao (2004).
Biomolecular motors: the F1-ATPase paradigm.
  Curr Opin Struct Biol, 14, 250-259.  
15373837 M.Müller, K.Gumbiowski, D.A.Cherepanov, S.Winkler, W.Junge, S.Engelbrecht, and O.Pänke (2004).
Rotary F1-ATPase. Is the C-terminus of subunit gamma fixed or mobile?
  Eur J Biochem, 271, 3914-3922.  
15128574 M.Ventura, C.Canchaya, D.van Sinderen, G.F.Fitzgerald, and R.Zink (2004).
Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.
  Appl Environ Microbiol, 70, 3110-3121.  
15573135 N.Nelson, and A.Ben-Shem (2004).
The complex architecture of oxygenic photosynthesis.
  Nat Rev Mol Cell Biol, 5, 971-982.  
14691226 N.Sreerama, and R.W.Woody (2004).
On the analysis of membrane protein circular dichroism spectra.
  Protein Sci, 13, 100-112.  
15388948 O.Drory, A.Mor, F.Frolow, and N.Nelson (2004).
Expression, crystallization and phasing of vacuolar H(+)-ATPase subunit C (Vma5p) of Saccharomyces cerevisiae.
  Acta Crystallogr D Biol Crystallogr, 60, 1906-1909.  
15540116 O.Drory, F.Frolow, and N.Nelson (2004).
Crystal structure of yeast V-ATPase subunit C reveals its stator function.
  EMBO Rep, 5, 1148-1152.
PDB code: 1u7l
15315755 P.G.Leiman, P.R.Chipman, V.A.Kostyuchenko, V.V.Mesyanzhinov, and M.G.Rossmann (2004).
Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host.
  Cell, 118, 419-429.
PDB code: 1tja
14739290 P.Pavlova, K.Shimabukuro, T.Hisabori, G.Groth, H.Lill, and D.Bald (2004).
Complete inhibition and partial Re-activation of single F1-ATPase molecules by tentoxin: new properties of the re-activated enzyme.
  J Biol Chem, 279, 9685-9688.  
15229653 R.Kagawa, M.G.Montgomery, K.Braig, A.G.Leslie, and J.E.Walker (2004).
The structure of bovine F1-ATPase inhibited by ADP and beryllium fluoride.
  EMBO J, 23, 2734-2744.
PDB codes: 1w0j 1w0k
15601770 R.N.Frese, C.A.Siebert, R.A.Niederman, C.N.Hunter, C.Otto, and R.van Grondelle (2004).
The long-range organization of a native photosynthetic membrane.
  Proc Natl Acad Sci U S A, 101, 17994-17999.  
15549494 S.B.Jang, M.S.Jeong, L.C.Seefeldt, and J.W.Peters (2004).
Structural and biochemical implications of single amino acid substitutions in the nucleotide-dependent switch regions of the nitrogenase Fe protein from Azotobacter vinelandii.
  J Biol Inorg Chem, 9, 1028-1033.
PDB codes: 1xd8 1xd9 1xdb
14718917 S.C.Harrison (2004).
Whither structural biology?
  Nat Struct Mol Biol, 11, 12-15.  
15273291 S.Scheuring, J.N.Sturgis, V.Prima, A.Bernadac, D.Lévy, and J.L.Rigaud (2004).
Watching the photosynthetic apparatus in native membranes.
  Proc Natl Acad Sci U S A, 101, 11293-11297.  
15269204 S.Wilkens, T.Inoue, and M.Forgac (2004).
Three-dimensional structure of the vacuolar ATPase. Localization of subunit H by difference imaging and chemical cross-linking.
  J Biol Chem, 279, 41942-41949.  
14990467 S.X.Sun, H.Wang, and G.Oster (2004).
Asymmetry in the F1-ATPase and its implications for the rotational cycle.
  Biophys J, 86, 1373-1384.  
15111433 T.C.Flynn, and J.Ma (2004).
Theoretical analysis of twist/bend ratio and mechanical moduli of bacterial flagellar hook and filament.
  Biophys J, 86, 3204-3210.  
14981290 T.Hosaka, T.Murata, Y.Kakinuma, and I.Yamato (2004).
Identification of nucleotide binding sites in V-type Na+-ATPase from Enterococcus hirae.
  Biosci Biotechnol Biochem, 68, 293-299.  
14730353 T.Nishizaka, K.Oiwa, H.Noji, S.Kimura, E.Muneyuki, M.Yoshida, and K.Kinosita (2004).
Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation.
  Nat Struct Mol Biol, 11, 142-148.  
15199054 V.V.Bulygin, T.M.Duncan, and R.L.Cross (2004).
Rotor/Stator interactions of the epsilon subunit in Escherichia coli ATP synthase and implications for enzyme regulation.
  J Biol Chem, 279, 35616-35621.  
15185079 Z.Li, and X.Zhang (2004).
Electron-microscopic structure of the V-ATPase from mung bean.
  Planta, 219, 948-954.  
12631703 A.Blocker, K.Komoriya, and S.Aizawa (2003).
Type III secretion systems and bacterial flagella: insights into their function from structural similarities.
  Proc Natl Acad Sci U S A, 100, 3027-3030.  
12829692 A.Hinton, E.R.Zuiderweg, and S.H.Ackerman (2003).
A purified subfragment of yeast Atp11p retains full molecular chaperone activity.
  J Biol Chem, 278, 34110-34113.  
14506029 A.J.Martín-Galiano, L.Balsalobre, A.Fenoll, and la Campa (2003).
Genetic characterization of optochin-susceptible viridans group streptococci.
  Antimicrob Agents Chemother, 47, 3187-3194.  
12626501 A.N.Stephens, M.A.Khan, X.Roucou, P.Nagley, and R.J.Devenish (2003).
The molecular neighborhood of subunit 8 of yeast mitochondrial F1F0-ATP synthase probed by cysteine scanning mutagenesis and chemical modification.
  J Biol Chem, 278, 17867-17875.  
14671305 A.W.Roszak, T.D.Howard, J.Southall, A.T.Gardiner, C.J.Law, N.W.Isaacs, and R.J.Cogdell (2003).
Crystal structure of the RC-LH1 core complex from Rhodopseudomonas palustris.
  Science, 302, 1969-1972.
PDB code: 1pyh
12944317 C.Burzik, G.Kaim, P.Dimroth, E.Bamberg, and K.Fendler (2003).
Charge displacements during ATP-hydrolysis and synthesis of the Na+-transporting FoF1-ATPase of Ilyobacter tartaricus.
  Biophys J, 85, 2044-2054.  
12473663 C.M.Angevine, and R.H.Fillingame (2003).
Aqueous access channels in subunit a of rotary ATP synthase.
  J Biol Chem, 278, 6066-6074.  
12624095 C.Mellwig, and B.Böttcher (2003).
A unique resting position of the ATP-synthase from chloroplasts.
  J Biol Chem, 278, 18544-18549.  
12525480 D.Zhang, and S.B.Vik (2003).
Close proximity of a cytoplasmic loop of subunit a with c subunits of the ATP synthase from Escherichia coli.
  J Biol Chem, 278, 12319-12324.  
12923572 E.Cabezón, M.G.Montgomery, A.G.Leslie, and J.E.Walker (2003).
The structure of bovine F1-ATPase in complex with its regulatory protein IF1.
  Nat Struct Biol, 10, 744-750.
PDB code: 1ohh
14525013 E.Gehrig, and O.Hess (2003).
Spatiotemporal dynamics of optical molecular motors.
  Phys Rev E Stat Nonlin Soft Matter Phys, 68, 021914.  
12923524 E.H.Egelman (2003).
A tale of two polymers: new insights into helical filaments.
  Nat Rev Mol Cell Biol, 4, 621-630.  
12569096 E.Shao, T.Nishi, S.Kawasaki-Nishi, and M.Forgac (2003).
Mutational analysis of the non-homologous region of subunit A of the yeast V-ATPase.
  J Biol Chem, 278, 12985-12991.  
12859904 E.Skordalakes, and J.M.Berger (2003).
Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading.
  Cell, 114, 135-146.
PDB codes: 1pv4 1pvo
12622725 F.Hayashi, H.Suzuki, R.Iwase, T.Uzumaki, A.Miyake, J.R.Shen, K.Imada, Y.Furukawa, K.Yonekura, K.Namba, and M.Ishiura (2003).
ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC.
  Genes Cells, 8, 287-296.  
12694201 G.Arselin, M.F.Giraud, A.Dautant, J.Vaillier, D.Brèthes, B.Coulary-Salin, J.Schaeffer, and J.Velours (2003).
The GxxxG motif of the transmembrane domain of subunit e is involved in the dimerization/oligomerization of the yeast ATP synthase complex in the mitochondrial membrane.
  Eur J Biochem, 270, 1875-1884.  
14527321 G.Cecchini (2003).
Function and structure of complex II of the respiratory chain.
  Annu Rev Biochem, 72, 77.  
12628343 G.Oster, and H.Wang (2003).
Rotary protein motors.
  Trends Cell Biol, 13, 114-121.  
12810943 H.Grubmuller (2003).
What happens if the room at the bottom runs out? A close look at small water pores.
  Proc Natl Acad Sci U S A, 100, 7421-7422.  
14754233 H.Miki, M.Sato, and M.Kohmoto (2003).
Motion of a rotatory molecular motor and the chemical reaction rate.
  Phys Rev E Stat Nonlin Soft Matter Phys, 68, 061906.  
12885621 I.Antes, D.Chandler, H.Wang, and G.Oster (2003).
The unbinding of ATP from F1-ATPase.
  Biophys J, 85, 695-706.  
12523995 J.F.Allen (2003).
Cyclic, pseudocyclic and noncyclic photophosphorylation: new links in the chain.
  Trends Plant Sci, 8, 15-19.  
14633978 J.L.Rubinstein, J.E.Walker, and R.Henderson (2003).
Structure of the mitochondrial ATP synthase by electron cryomicroscopy.
  EMBO J, 22, 6182-6192.  
12646576 K.G.Helfenbein, T.P.Ellis, C.L.Dieckmann, and A.Tzagoloff (2003).
ATP22, a nuclear gene required for expression of the F0 sector of mitochondrial ATPase in Saccharomyces cerevisiae.
  J Biol Chem, 278, 19751-19756.  
12898710 K.Ohnishi, S.Ishibashi, M.Kunihiro, T.Satoh, K.Matsubara, S.Oku, B.Ono, T.Mabuchi, and M.Takeda (2003).
Studies on the ATP3 gene of Saccharomyces cerevisiae: presence of two closely linked copies, ATP3a and ATP3b, on the right arm of chromosome II.
  Yeast, 20, 943-954.  
14657340 K.Shimabukuro, R.Yasuda, E.Muneyuki, K.Y.Hara, K.Kinosita, and M.Yoshida (2003).
Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.
  Proc Natl Acad Sci U S A, 100, 14731-14736.  
12913005 K.Yokoyama, K.Nagata, H.Imamura, S.Ohkuma, M.Yoshida, and M.Tamakoshi (2003).
Subunit arrangement in V-ATPase from Thermus thermophilus.
  J Biol Chem, 278, 42686-42691.  
12603738 L.Lefebvre-Legendre, A.Balguerie, S.Duvezin-Caubet, M.F.Giraud, P.P.Slonimski, and J.P.Di Rago (2003).
F1-catalysed ATP hydrolysis is required for mitochondrial biogenesis in Saccharomyces cerevisiae growing under conditions where it cannot respire.
  Mol Microbiol, 47, 1329-1339.  
14532272 M.D.Greene, and W.D.Frasch (2003).
Interactions among gamma R268, gamma Q269, and the beta subunit catch loop of Escherichia coli F1-ATPase are important for catalytic activity.
  J Biol Chem, 278, 51594-51598.  
14507690 M.Dittrich, S.Hayashi, and K.Schulten (2003).
On the mechanism of ATP hydrolysis in F1-ATPase.
  Biophys J, 85, 2253-2266.  
  12763795 M.G.Palmgren, M.J.Buch-Pedersen, and A.L.Møller (2003).
Mechanism of proton pumping by plant plasma membrane H+-ATPase: role of residues in transmembrane segments 5 and 6.
  Ann N Y Acad Sci, 986, 188-197.  
12554674 M.H.Lamers, H.H.Winterwerp, and T.K.Sixma (2003).
The alternating ATPase domains of MutS control DNA mismatch repair.
  EMBO J, 22, 746-756.
PDB code: 1ng9
12414811 M.Prescott, S.Nowakowski, P.Gavin, P.Nagley, J.C.Whisstock, and R.J.Devenish (2003).
Subunit gamma-green fluorescent protein fusions are functionally incorporated into mitochondrial F1F0-ATP synthase, arguing against a rigid cap structure at the top of F1.
  J Biol Chem, 278, 251-256.  
14657336 M.Strajbl, A.Shurki, and A.Warshel (2003).
Converting conformational changes to electrostatic energy in molecular motors: The energetics of ATP synthase.
  Proc Natl Acad Sci U S A, 100, 14834-14839.  
14656431 P.Dimroth, C.von Ballmoos, T.Meier, and G.Kaim (2003).
Electrical power fuels rotary ATP synthase.
  Structure, 11, 1469-1473.  
12944266 R.A.Böckmann, and H.Grubmüller (2003).
Conformational dynamics of the F1-ATPase beta-subunit: a molecular dynamics study.
  Biophys J, 85, 1482-1491.  
12876203 R.Yasuda, T.Masaike, K.Adachi, H.Noji, H.Itoh, and K.Kinosita (2003).
The ATP-waiting conformation of rotating F1-ATPase revealed by single-pair fluorescence resonance energy transfer.
  Proc Natl Acad Sci U S A, 100, 9314-9318.  
14581615 S.Duvezin-Caubet, M.Caron, M.F.Giraud, J.Velours, and J.P.di Rago (2003).
The two rotor components of yeast mitochondrial ATP synthase are mechanically coupled by subunit delta.
  Proc Natl Acad Sci U S A, 100, 13235-13240.  
12598539 S.L.Lusetti, E.A.Wood, C.D.Fleming, M.J.Modica, J.Korth, L.Abbott, D.W.Dwyer, A.I.Roca, R.B.Inman, and M.M.Cox (2003).
C-terminal deletions of the Escherichia coli RecA protein. Characterization of in vivo and in vitro effects.
  J Biol Chem, 278, 16372-16380.  
12727865 S.N.Savvides, H.J.Yeo, M.R.Beck, F.Blaesing, R.Lurz, E.Lanka, R.Buhrdorf, W.Fischer, R.Haas, and G.Waksman (2003).
VirB11 ATPases are dynamic hexameric assemblies: new insights into bacterial type IV secretion.
  EMBO J, 22, 1969-1980.
PDB codes: 1nly 1nlz 1opx
12813052 S.Samanta, T.Ayvaz, M.Reyes, H.A.Shuman, J.Chen, and A.L.Davidson (2003).
Disulfide cross-linking reveals a site of stable interaction between C-terminal regulatory domains of the two MalK subunits in the maltose transport complex.
  J Biol Chem, 278, 35265-35271.  
12670943 T.Hirata, A.Iwamoto-Kihara, G.H.Sun-Wada, T.Okajima, Y.Wada, and M.Futai (2003).
Subunit rotation of vacuolar-type proton pumping ATPase: relative rotation of the G and C subunits.
  J Biol Chem, 278, 23714-23719.  
12651848 T.Murata, I.Arechaga, I.M.Fearnley, Y.Kakinuma, I.Yamato, and J.E.Walker (2003).
The membrane domain of the Na+-motive V-ATPase from Enterococcus hirae contains a heptameric rotor.
  J Biol Chem, 278, 21162-21167.  
12627395 T.Stehle, and T.S.Dermody (2003).
Structural evidence for common functions and ancestry of the reovirus and adenovirus attachment proteins.
  Rev Med Virol, 13, 123-132.  
12552084 W.Yang, Y.Q.Gao, Q.Cui, J.Ma, and M.Karplus (2003).
The missing link between thermodynamics and structure in F1-ATPase.
  Proc Natl Acad Sci U S A, 100, 874-879.  
12837747 Y.Kato-Yamada, and M.Yoshida (2003).
Isolated epsilon subunit of thermophilic F1-ATPase binds ATP.
  J Biol Chem, 278, 36013-36016.  
14500780 Y.Q.Gao, W.Yang, R.A.Marcus, and M.Karplus (2003).
A model for the cooperative free energy transduction and kinetics of ATP hydrolysis by F1-ATPase.
  Proc Natl Acad Sci U S A, 100, 11339-11344.  
12554933 Y.R.Yuan, O.Martsinkevich, and J.F.Hunt (2003).
Structural characterization of an MJ1267 ATP-binding cassette crystal with a complex pattern of twinning caused by promiscuous fiber packing.
  Acta Crystallogr D Biol Crystallogr, 59, 225-238.
PDB code: 1g9x
12551938 Y.Xu, J.Johnson, H.Kohn, and W.R.Widger (2003).
ATP binding to Rho transcription termination factor. Mutant F355W ATP-induced fluorescence quenching reveals dynamic ATP binding.
  J Biol Chem, 278, 13719-13727.  
12960158 Z.Zhang, C.Charsky, P.M.Kane, and S.Wilkens (2003).
Yeast V1-ATPase: affinity purification and structural features by electron microscopy.
  J Biol Chem, 278, 47299-47306.  
12019076 A.J.Martín-Galiano, B.Gorgojo, C.M.Kunin, and la Campa (2002).
Mefloquine and new related compounds target the F(0) complex of the F(0)F(1) H(+)-ATPase of Streptococcus pneumoniae.
  Antimicrob Agents Chemother, 46, 1680-1687.  
11867431 B.A.Feniouk, D.A.Cherepanov, N.E.Voskoboynikova, A.Y.Mulkidjanian, and W.Junge (2002).
Chromatophore vesicles of Rhodobacter capsulatus contain on average one F(O)F(1)-ATP synthase each.
  Biophys J, 82, 1115-1122.  
12148785 C.Aznar-Derunes, C.Manigand, P.Picard, A.Dautant, M.Goetz, J.M.Schmitter, and G.Precigoux (2002).
Study of the yeast Saccharomyces cerevisiae F1F0-ATPase epsilon-subunit.
  J Pept Sci, 8, 365-372.  
12119022 C.G.Cheong, J.C.Escalante-Semerena, and I.Rayment (2002).
Structural studies of the L-threonine-O-3-phosphate decarboxylase (CobD) enzyme from Salmonella enterica: the apo, substrate, and product-aldimine complexes.
  Biochemistry, 41, 9079-9089.
PDB codes: 1l4b 1l4e 1l4f 1l4g 1l4h 1l4k 1l4l 1l4m 1l4n 1l5f 1l5k 1l5l 1l5m 1l5n 1l5o 1lc5 1lc7 1lc8
12360520 C.Minoletti, J.Santolini, F.Haraux, J.Pothier, and F.André (2002).
Rebuilt 3D structure of the chloroplast f1 ATPase-tentoxin complex.
  Proteins, 49, 302-320.  
12399471 C.Schnick, N.Körtgen, and G.Groth (2002).
Complete inhibition of the tentoxin-resistant F1-ATPase from Escherichia coli by the phytopathogenic inhibitor tentoxin after substitution of critical residues in the alpha - and beta -subunit.
  J Biol Chem, 277, 51003-51007.  
  12242224 C.Y.Lai, E.Jaruga, C.Borghouts, and S.M.Jazwinski (2002).
A mutation in the ATP2 gene abrogates the age asymmetry between mother and daughter cells of the yeast Saccharomyces cerevisiae.
  Genetics, 162, 73-87.  
12423357 C.von Ballmoos, T.Meier, and P.Dimroth (2002).
Membrane embedded location of Na+ or H+ binding sites on the rotor ring of F1F0 ATP synthases.
  Eur J Biochem, 269, 5581-5589.  
11719523 C.von Ballmoos, Y.Appoldt, J.Brunner, T.Granier, A.Vasella, and P.Dimroth (2002).
Membrane topography of the coupling ion binding site in Na+-translocating F1F0 ATP synthase.
  J Biol Chem, 277, 3504-3510.  
12000971 D.G.Vassylyev, S.Sekine, O.Laptenko, J.Lee, M.N.Vassylyeva, S.Borukhov, and S.Yokoyama (2002).
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution.
  Nature, 417, 712-719.
PDB code: 1iw7
11875079 D.J.Cipriano, Y.Bi, and S.D.Dunn (2002).
Genetic fusions of globular proteins to the epsilon subunit of the Escherichia coli ATP synthase: Implications for in vivo rotational catalysis and epsilon subunit function.
  J Biol Chem, 277, 16782-16790.  
12093921 E.E.Fetsch, and A.L.Davidson (2002).
Vanadate-catalyzed photocleavage of the signature motif of an ATP-binding cassette (ABC) transporter.
  Proc Natl Acad Sci U S A, 99, 9685-9690.  
12027895 F.Wehrle, Y.Appoldt, G.Kaim, and P.Dimroth (2002).
Reconstitution of Fo of the sodium ion translocating ATP synthase of Propionigenium modestum from its heterologously expressed and purified subunits.
  Eur J Biochem, 269, 2567-2573.  
11748238 F.X.Gomis-Rüth, G.Moncalían, la Cruz, and M.Coll (2002).
Conjugative plasmid protein TrwB, an integral membrane type IV secretion system coupling protein. Detailed structural features and mapping of the active site cleft.
  J Biol Chem, 277, 7556-7566.  
11943766 G.Groth, T.Hisabori, H.Lill, and D.Bald (2002).
Substitution of a single amino acid switches the tentoxin-resistant thermophilic F1-ATPase into a tentoxin-sensitive enzyme.
  J Biol Chem, 277, 20117-20119.  
11904410 G.Groth (2002).
Structure of spinach chloroplast F1-ATPase complexed with the phytopathogenic inhibitor tentoxin.
  Proc Natl Acad Sci U S A, 99, 3464-3468.
PDB code: 1kmh
11910032 G.Miles, L.Movileanu, and H.Bayley (2002).
Subunit composition of a bicomponent toxin: staphylococcal leukocidin forms an octameric transmembrane pore.
  Protein Sci, 11, 894-902.  
11839740 G.Tombline, K.S.Shim, and R.Fishel (2002).
Biochemical characterization of the human RAD51 protein. II. Adenosine nucleotide binding and competition.
  J Biol Chem, 277, 14426-14433.  
11988771 I.D.Campbell (2002).
Timeline: the march of structural biology.
  Nat Rev Mol Cell Biol, 3, 377-381.  
11815621 I.Domgall, D.Venzke, U.Lüttge, R.Ratajczak, and B.Böttcher (2002).
Three-dimensional map of a plant V-ATPase based on electron microscopy.
  J Biol Chem, 277, 13115-13121.  
12176312 J.Allen (2002).
Photosynthesis of ATP-electrons, proton pumps, rotors, and poise.
  Cell, 110, 273-276.  
12021273 J.C.Long, J.DeLeon-Rangel, and S.B.Vik (2002).
Characterization of the first cytoplasmic loop of subunit a of the Escherichia coli ATP synthase by surface labeling, cross-linking, and mutagenesis.
  J Biol Chem, 277, 27288-27293.  
12242434 J.F.Hunt, S.Weinkauf, L.Henry, J.J.Fak, P.McNicholas, D.B.Oliver, and J.Deisenhofer (2002).
Nucleotide control of interdomain interactions in the conformational reaction cycle of SecA.
  Science, 297, 2018-2026.
PDB codes: 1m6n 1m74
12121647 J.Ma, T.C.Flynn, Q.Cui, A.G.Leslie, J.E.Walker, and M.Karplus (2002).
A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase.
  Structure, 10, 921-931.  
11864990 J.Weber, S.Wilke-Mounts, and A.E.Senior (2002).
Quantitative determination of binding affinity of delta-subunit in Escherichia coli F1-ATPase: effects of mutation, Mg2+, and pH on Kd.
  J Biol Chem, 277, 18390-18396.  
12081500 J.Wei, Q.X.Tang, O.Varlamova, C.Roche, R.Lee, and T.S.Leyh (2002).
Cysteine biosynthetic enzymes are the pieces of a metabolic energy pump.
  Biochemistry, 41, 8493-8498.  
11779852 K.Dong, H.Ren, and W.S.Allison (2002).
The fluorescence spectrum of the introduced tryptophans in the alpha 3(beta F155W)3gamma subcomplex of the F1-ATPase from the thermophilic Bacillus PS3 cannot be used to distinguish between the number of nucleoside di- and triphosphates bound to catalytic sites.
  J Biol Chem, 277, 9540-9547.  
11964400 M.Müller, O.Pänke, W.Junge, and S.Engelbrecht (2002).
F1-ATPase, the C-terminal end of subunit gamma is not required for ATP hydrolysis-driven rotation.
  J Biol Chem, 277, 23308-23313.  
11784298 N.Mitome, S.Ono, T.Suzuki, K.Shimabukuro, E.Muneyuki, and M.Yoshida (2002).
The presence of phosphate at a catalytic site suppresses the formation of the MgADP-inhibited form of F(1)-ATPase.
  Eur J Biochem, 269, 53-60.  
12415305 N.Nelson, A.Sacher, and H.Nelson (2002).
The significance of molecular slips in transport systems.
  Nat Rev Mol Cell Biol, 3, 876-881.  
11863460 P.J.O'Brien, and D.Herschlag (2002).
Alkaline phosphatase revisited: hydrolysis of alkyl phosphates.
  Biochemistry, 41, 3207-3225.  
11952801 P.Turina, and B.A.Melandri (2002).
A point mutation in the ATP synthase of Rhodobacter capsulatus results in differential contributions of Delta(pH) and Delta(phi) in driving the ATP synthesis reaction.
  Eur J Biochem, 269, 1984-1992.  
11836535 R.A.Böckmann, and H.Grubmüller (2002).
Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase.
  Nat Struct Biol, 9, 198-202.  
11893513 R.A.Capaldi, and R.Aggeler (2002).
Mechanism of the F(1)F(0)-type ATP synthase, a biological rotary motor.
  Trends Biochem Sci, 27, 154-160.  
11863461 S.Bandyopadhyay, H.Ren, C.S.Wang, and W.S.Allison (2002).
The (alpha F(357)C)(3)(beta R(372)C)(3)gamma subcomplex of the F(1)-ATPase from the thermophilic Bacillus PS3 has altered ATPase activity after cross-linking alpha and beta subunits at noncatalytic site interfaces.
  Biochemistry, 41, 3226-3234.  
11826292 S.L.Alper (2002).
Genetic diseases of acid-base transporters.
  Annu Rev Physiol, 64, 899-923.  
11964408 T.Ariga, T.Masaike, H.Noji, and M.Yoshida (2002).
Stepping rotation of F(1)-ATPase with one, two, or three altered catalytic sites that bind ATP only slowly.
  J Biol Chem, 277, 24870-24874.  
11880367 T.Masaike, E.Muneyuki, H.Noji, K.Kinosita, and M.Yoshida (2002).
F1-ATPase changes its conformations upon phosphate release.
  J Biol Chem, 277, 21643-21649.  
12393753 T.Meier, and P.Dimroth (2002).
Intersubunit bridging by Na+ ions as a rationale for the unusual stability of the c-rings of Na+-translocating F1F0 ATP synthases.
  EMBO Rep, 3, 1094-1098.  
12477935 T.Mori, S.V.Saveliev, Y.Xu, W.F.Stafford, M.M.Cox, R.B.Inman, and C.H.Johnson (2002).
Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA.
  Proc Natl Acad Sci U S A, 99, 17203-17208.  
11836511 T.Nishi, and M.Forgac (2002).
The vacuolar (H+)-ATPases--nature's most versatile proton pumps.
  Nat Rev Mol Cell Biol, 3, 94.  
11952796 U.Matthey, D.Braun, and P.Dimroth (2002).
NMR investigations of subunit c of the ATP synthase from Propionigenium modestum in chloroform/methanol/water (4 : 4 : 1).
  Eur J Biochem, 269, 1942-1946.  
12368857 V.I.Gordeliy, J.Labahn, R.Moukhametzianov, R.Efremov, J.Granzin, R.Schlesinger, G.Büldt, T.Savopol, A.J.Scheidig, J.P.Klare, and M.Engelhard (2002).
Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex.
  Nature, 419, 484-487.
PDB code: 1h2s
11799128 V.Soubannier, J.Vaillier, P.Paumard, B.Coulary, J.Schaeffer, and J.Velours (2002).
In the absence of the first membrane-spanning segment of subunit 4(b), the yeast ATP synthase is functional but does not dimerize or oligomerize.
  J Biol Chem, 277, 10739-10745.  
12220197 Y.Arata, J.D.Baleja, and M.Forgac (2002).
Localization of subunits D, E, and G in the yeast V-ATPase complex using cysteine-mediated cross-linking to subunit B.
  Biochemistry, 41, 11301-11307.  
12226105 Y.J.Jeong, D.E.Kim, and S.S.Patel (2002).
Kinetic pathway of dTTP hydrolysis by hexameric T7 helicase-primase in the absence of DNA.
  J Biol Chem, 277, 43778-43784.  
12034708 Y.Xu, H.Kohn, and W.R.Widger (2002).
Mutations in the rho transcription termination factor that affect RNA tracking.
  J Biol Chem, 277, 30023-30030.  
11585832 A.C.Hausrath, R.A.Capaldi, and B.W.Matthews (2001).
The conformation of the epsilon- and gamma-subunits within the Escherichia coli F(1) ATPase.
  J Biol Chem, 276, 47227-47232.
PDB code: 1jnv
11722801 A.G.Senejani, E.Hilario, and J.P.Gogarten (2001).
The intein of the Thermoplasma A-ATPase A subunit: structure, evolution and expression in E. coli.
  BMC Biochem, 2, 13.  
11580837 A.J.Martín-Galiano, M.J.Ferrándiz, and la Campa (2001).
The promoter of the operon encoding the F0F1 ATPase of Streptococcus pneumoniae is inducible by pH.
  Mol Microbiol, 41, 1327-1338.  
11342173 A.R.Bandani, B.Amiri, T.M.Butt, and R.Gordon-Weeks (2001).
Effects of efrapeptin and destruxin, metabolites of entomogenous fungi, on the hydrolytic activity of a vacuolar type ATPase identified on the brush border membrane vesicles of Galleria mellonella midgut and on plant membrane bound hydrolytic enzymes.
  Biochim Biophys Acta, 1510, 367-377.  
11320317 A.Rodgers, G.Ewart, G.Cox, and M.Wilce (2001).
Crystallization and preliminary X-ray analysis of the complex of the epsilon-subunit and the central domain of the gamma-subunit from the Escherichia coli ATP synthase.
  Acta Crystallogr D Biol Crystallogr, 57, 722-724.  
11340051 B.E.Schultz, and S.I.Chan (2001).
Structures and proton-pumping strategies of mitochondrial respiratory enzymes.
  Annu Rev Biophys Biomol Struct, 30, 23-65.  
11828469 B.Ludwig, E.Bender, S.Arnold, M.Hüttemann, I.Lee, and B.Kadenbach (2001).
Cytochrome C oxidase and the regulation of oxidative phosphorylation.
  Chembiochem, 2, 392-403.  
11148030 C.B.Bauer, M.V.Fonseca, H.M.Holden, J.B.Thoden, T.B.Thompson, J.C.Escalante-Semerena, and I.Rayment (2001).
Three-dimensional structure of ATP:corrinoid adenosyltransferase from Salmonella typhimurium in its free state, complexed with MgATP, or complexed with hydroxycobalamin and MgATP.
  Biochemistry, 40, 361-374.
PDB codes: 1g5r 1g5t 1g64
11551790 C.Geourjon, C.Orelle, E.Steinfels, C.Blanchet, G.Deléage, A.Di Pietro, and J.M.Jault (2001).
A common mechanism for ATP hydrolysis in ABC transporter and helicase superfamilies.
  Trends Biochem Sci, 26, 539-544.  
11509340 D.A.Cherepanov, and W.Junge (2001).
Viscoelastic dynamics of actin filaments coupled to rotary F-ATPase: curvature as an indicator of the torque.
  Biophys J, 81, 1234-1244.  
11518700 D.Bald, H.Noji, M.Yoshida, Y.Hirono-Hara, and T.Hisabori (2001).
Redox regulation of the rotation of F(1)-ATP synthase.
  J Biol Chem, 276, 39505-39507.  
11297439 D.J.Crampton, R.LoBrutto, and W.D.Frasch (2001).
Identification of the P-loop lysine as a metal ligand in the absence of nucleotide at catalytic site 3 of chloroplast F1-ATPase from Chlamydomonas reinhardtii.
  Biochemistry, 40, 3710-3716.  
11522798 D.Sheluho, and S.H.Ackerman (2001).
An accessible hydrophobic surface is a key element of the molecular chaperone action of Atp11p.
  J Biol Chem, 276, 39945-39949.  
11327843 E.A.Johnson, Y.Evron, and R.E.McCarty (2001).
Resonance energy transfer between tryptophan 57 in the epsilon subunit and pyrene maleimide labeled gamma subunit of the chloroplast ATP synthase.
  Biochemistry, 40, 1804-1811.  
11231169 E.H.Egelman (2001).
Bacterial conjugation: running rings around DNA.
  Curr Biol, 11, R103-R105.  
11461827 F.X.Gomis-Rüth, and M.Coll (2001).
Structure of TrwB, a gatekeeper in bacterial conjugation.
  Int J Biochem Cell Biol, 33, 839-843.  
11329254 G.Grüber, D.I.Svergun, U.Coskun, T.Lemker, M.H.Koch, H.Schägger, and V.Müller (2001).
Structural Insights into the A1 ATPase from the archaeon, Methanosarcina mazei Gö1.
  Biochemistry, 40, 1890-1896.  
11248192 G.Kaim (2001).
The Na(+)-translocating F(1)F(0) ATP synthase of Propionigenium modestum: mechanochemical insights into the F(0) motor that drives ATP synthesis.
  Biochim Biophys Acta, 1505, 94.  
11266365 H.Stahlberg, D.J.Müller, K.Suda, D.Fotiadis, A.Engel, T.Meier, U.Matthey, and P.Dimroth (2001).
Bacterial Na(+)-ATP synthase has an undecameric rotor.
  EMBO Rep, 2, 229-233.  
11377800 I.E.Scheffler (2001).
Mitochondria make a come back.
  Adv Drug Deliv Rev, 49, 3.  
11296216 I.Hayashi, T.Oyama, and K.Morikawa (2001).
Structural and functional studies of MinD ATPase: implications for the molecular recognition of the bacterial cell division apparatus.
  EMBO J, 20, 1819-1828.
PDB codes: 1g3q 1g3r
11250031 J.K.Lanyi, and A.Pohorille (2001).
Proton pumps: mechanism of action and applications.
  Trends Biotechnol, 19, 140-144.  
11709174 J.Wang, J.J.Song, I.S.Seong, M.C.Franklin, S.Kamtekar, S.H.Eom, and C.H.Chung (2001).
Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU.
  Structure, 9, 1107-1116.