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Contents |
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766 a.a.
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138 a.a.
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153 a.a.
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* Residue conservation analysis
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PDB id:
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| Name: |
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Myosin
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Title:
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Myosin digested by papain
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Structure:
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Myosin heavy chain. Chain: a. Fragment: papain digested, subfragment 1 (s1). Myosin regulatory light chain. Chain: y. Fragment: papain digested, subfragment 1 (s1). Myosin essential light chain. Chain: z. Fragment: papain digested, subfragment 1 (s1)
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Source:
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Argopecten irradians. Organism_taxid: 31199. Tissue: skeletal muscle. Other_details: papain digestion of myosin. Other_details: papain digestion of myosin
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Biol. unit:
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Trimer (from
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Resolution:
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2.50Å
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R-factor:
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0.224
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R-free:
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0.297
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Authors:
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A.Houdusse,V.Kalabokis,D.Himmel,A.G.Szent-Gyorgyi,C.Cohen
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Key ref:
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A.Houdusse
et al.
(1999).
Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head.
Cell,
97,
459-470.
PubMed id:
DOI:
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Date:
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15-Jan-99
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Release date:
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12-May-99
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PROCHECK
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Headers
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References
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P24733
(MYS_AEQIR) -
Myosin heavy chain, striated muscle
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Seq: Struc:
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1938 a.a.
766 a.a.
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Gene Ontology (GO) functional annotation
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Cellular component
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myosin complex
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1 term
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Biochemical function
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calcium ion binding
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3 terms
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DOI no:
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Cell
97:459-470
(1999)
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PubMed id:
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Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head.
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A.Houdusse,
V.N.Kalabokis,
D.Himmel,
A.G.Szent-Györgyi,
C.Cohen.
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ABSTRACT
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The crystal structure of a proteolytic subfragment from scallop striated muscle
myosin, complexed with MgADP, has been solved at 2.5 A resolution and reveals an
unusual conformation of the myosin head. The converter and the lever arm are in
very different positions from those in either the pre-power stroke or near-rigor
state structures; moreover, in contrast to these structures, the SH1 helix is
seen to be unwound. Here we compare the overall organization of the myosin head
in these three states and show how the conformation of three flexible
"joints" produces rearrangements of the four major subdomains in the
myosin head with different bound nucleotides. We believe that this novel
structure represents one of the prehydrolysis ("ATP") states of the
contractile cycle in which the myosin heads stay detached from actin.
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Selected figure(s)
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Figure 3.
Figure 3. The ELC/Converter Interactions Modulate the
Position of the Lever ArmDifferent positions of the converter in
the three states result in major movements of the lever arm (see
Figure 1 and Figure 2). This diagram illustrates how the
converter and the ELC interact differently in chicken S1 (A),
scallop S1 complexed with MgADP (B), and smooth MDE–AlF[4]^−
(C). In this view, the converter (green) and the HP helix
(yellow) appear to be in similar positions. Note that
differences in the interactions between the C-terminal lobe of
the ELC (pink) and the motor domain in these structures result
in different bending of the heavy chain helix (cyan) after the
first three turns (green) that are part of the converter.
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Figure 5.
Figure 5. The Relay Controls the Position of the Converter to
which It Is Linked by Strong Conserved InteractionsRibbon
diagram of the interface between the relay (yellow) and the
converter (β sheet and last helix in green) in chicken S1 (A),
scallop S1 complexed with MgADP (B), and smooth MDE–AlF[4]^−
(C) oriented so that the converters superimpose. Note that the
orientation of the last three turns of the HP helix (yellow) is
similar in all these structures, since three glutamate residues
of this helix (brown) interact with residues of the converter
(cyan) in all three states. In contrast, the conformation of the
loop of the relay (yellow) is very different and is most rigid
in (C) where it interacts with the SH1 helix (red).
Conformational changes at both ends of the relay allow the
orientation of the lower 50 kDa subdomain (white, HP and HQ
helices) to differ with respect to that of the converter in
these three states. Note also how the environment around the
tryptophane residue (blue) of the relay varies in the three
states.
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The above figures are
reprinted
by permission from Cell Press:
Cell
(1999,
97,
459-470)
copyright 1999.
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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C.Veigel,
and
C.F.Schmidt
(2011).
Moving into the cell: single-molecule studies of molecular motors in complex environments.
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Nat Rev Mol Cell Biol, 12,
163-176.
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|
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D.M.Jordan,
A.Kiezun,
S.M.Baxter,
V.Agarwala,
R.C.Green,
M.F.Murray,
T.Pugh,
M.S.Lebo,
H.L.Rehm,
B.H.Funke,
and
S.R.Sunyaev
(2011).
Development and validation of a computational method for assessment of missense variants in hypertrophic cardiomyopathy.
|
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Am J Hum Genet, 88,
183-192.
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J.H.Brown,
V.S.Kumar,
E.O'Neall-Hennessey,
L.Reshetnikova,
H.Robinson,
M.Nguyen-McCarty,
A.G.Szent-Györgyi,
and
C.Cohen
(2011).
Visualizing key hinges and a potential major source of compliance in the lever arm of myosin.
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Proc Natl Acad Sci U S A, 108,
114-119.
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PDB code:
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S.Masuda,
T.Tomohiro,
and
Y.Hatanaka
(2011).
Rapidly photoactivatable ATP probes for specific labeling of tropomyosin within the actomyosin protein complex.
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Bioorg Med Chem Lett, 21,
2252-2254.
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|
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Y.E.Nesmelov,
R.V.Agafonov,
I.V.Negrashov,
S.E.Blakely,
M.A.Titus,
and
D.D.Thomas
(2011).
Structural kinetics of myosin by transient time-resolved FRET.
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Proc Natl Acad Sci U S A, 108,
1891-1896.
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H.L.Sweeney,
and
A.Houdusse
(2010).
Structural and functional insights into the Myosin motor mechanism.
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Annu Rev Biophys, 39,
539-557.
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J.T.Granados-Riveron,
T.K.Ghosh,
M.Pope,
F.Bu'Lock,
C.Thornborough,
J.Eason,
E.P.Kirk,
D.Fatkin,
M.P.Feneley,
R.P.Harvey,
J.A.Armour,
and
J.David Brook
(2010).
Alpha-cardiac myosin heavy chain (MYH6) mutations affecting myofibril formation are associated with congenital heart defects.
|
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Hum Mol Genet, 19,
4007-4016.
|
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K.Amano,
T.Yoshidome,
M.Iwaki,
M.Suzuki,
and
M.Kinoshita
(2010).
Entropic potential field formed for a linear-motor protein near a filament: Statistical-mechanical analyses using simple models.
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J Chem Phys, 133,
045103.
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|
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V.Ovchinnikov,
B.L.Trout,
and
M.Karplus
(2010).
Mechanical coupling in myosin V: a simulation study.
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| |
J Mol Biol, 395,
815-833.
|
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|
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|
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B.Seebohm,
F.Matinmehr,
J.Köhler,
A.Francino,
F.Navarro-Lopéz,
A.Perrot,
C.Ozcelik,
W.J.McKenna,
B.Brenner,
and
T.Kraft
(2009).
Cardiomyopathy mutations reveal variable region of myosin converter as major element of cross-bridge compliance.
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Biophys J, 97,
806-824.
|
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K.Ajtai,
M.F.Halstead,
M.Nyitrai,
A.R.Penheiter,
Y.Zheng,
and
T.P.Burghardt
(2009).
The myosin C-loop is an allosteric actin contact sensor in actomyosin.
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Biochemistry, 48,
5263-5275.
|
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W.Zheng,
and
D.Thirumalai
(2009).
Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II.
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Biophys J, 96,
2128-2137.
|
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A.J.Engler,
C.Carag-Krieger,
C.P.Johnson,
M.Raab,
H.Y.Tang,
D.W.Speicher,
J.W.Sanger,
J.M.Sanger,
and
D.E.Discher
(2008).
Embryonic cardiomyocytes beat best on a matrix with heart-like elasticity: scar-like rigidity inhibits beating.
|
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J Cell Sci, 121,
3794-3802.
|
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A.Pecci,
E.Panza,
N.Pujol-Moix,
C.Klersy,
F.Di Bari,
V.Bozzi,
P.Gresele,
S.Lethagen,
F.Fabris,
C.Dufour,
A.Granata,
M.Doubek,
C.Pecoraro,
P.A.Koivisto,
P.G.Heller,
A.Iolascon,
P.Alvisi,
D.Schwabe,
E.De Candia,
B.Rocca,
U.Russo,
U.Ramenghi,
P.Noris,
M.Seri,
C.L.Balduini,
and
A.Savoia
(2008).
Position of nonmuscle myosin heavy chain IIA (NMMHC-IIA) mutations predicts the natural history of MYH9-related disease.
|
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Hum Mutat, 29,
409-417.
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A.R.Thompson,
N.Naber,
C.Wilson,
R.Cooke,
and
D.D.Thomas
(2008).
Structural dynamics of the actomyosin complex probed by a bifunctional spin label that cross-links SH1 and SH2.
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Biophys J, 95,
5238-5246.
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I.Aprodu,
A.Redaelli,
and
M.Soncini
(2008).
Actomyosin interaction: mechanical and energetic properties in different nucleotide binding States.
|
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Int J Mol Sci, 9,
1927-1943.
|
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J.H.Brown,
Y.Yang,
L.Reshetnikova,
S.Gourinath,
D.Süveges,
J.Kardos,
F.Hóbor,
R.Reutzel,
L.Nyitray,
and
C.Cohen
(2008).
An unstable head-rod junction may promote folding into the compact off-state conformation of regulated myosins.
|
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J Mol Biol, 375,
1434-1443.
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PDB codes:
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L.Alamo,
W.Wriggers,
A.Pinto,
F.Bártoli,
L.Salazar,
F.Q.Zhao,
R.Craig,
and
R.Padrón
(2008).
Three-dimensional reconstruction of tarantula myosin filaments suggests how phosphorylation may regulate myosin activity.
|
| |
J Mol Biol, 384,
780-797.
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PDB code:
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M.Cecchini,
A.Houdusse,
and
M.Karplus
(2008).
Allosteric communication in myosin V: from small conformational changes to large directed movements.
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PLoS Comput Biol, 4,
e1000129.
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M.J.Harris,
and
H.J.Woo
(2008).
Energetics of subdomain movements and fluorescence probe solvation environment change in ATP-bound myosin.
|
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Eur Biophys J, 38,
1.
|
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|
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R.Shi,
M.Pineda,
E.Ajamian,
Q.Cui,
A.Matte,
and
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(2008).
Structure of L-xylulose-5-Phosphate 3-epimerase (UlaE) from the anaerobic L-ascorbate utilization pathway of Escherichia coli: identification of a novel phosphate binding motif within a TIM barrel fold.
|
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J Bacteriol, 190,
8137-8144.
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PDB codes:
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S.L.Hooper,
K.H.Hobbs,
and
J.B.Thuma
(2008).
Invertebrate muscles: thin and thick filament structure; molecular basis of contraction and its regulation, catch and asynchronous muscle.
|
| |
Prog Neurobiol, 86,
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|
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|
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W.A.Kronert,
C.M.Dambacher,
A.F.Knowles,
D.M.Swank,
and
S.I.Bernstein
(2008).
Alternative relay domains of Drosophila melanogaster myosin differentially affect ATPase activity, in vitro motility, myofibril structure and muscle function.
|
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J Mol Biol, 379,
443-456.
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A.Schlessinger,
M.Punta,
and
B.Rost
(2007).
Natively unstructured regions in proteins identified from contact predictions.
|
| |
Bioinformatics, 23,
2376-2384.
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C.R.Bagshaw
(2007).
Myosin mechanochemistry.
|
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Structure, 15,
511-512.
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L.Shakirova,
V.Mikhailova,
E.Siletskaya,
V.P.Timofeev,
and
D.I.Levitsky
(2007).
Nucleotide-induced and actin-induced structural changes in SH1-SH2-modified myosin subfragment 1.
|
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J Muscle Res Cell Motil, 28,
67-78.
|
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|
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M.F.Halstead,
K.Ajtai,
A.R.Penheiter,
J.D.Spencer,
Y.Zheng,
E.A.Morrison,
and
T.P.Burghardt
(2007).
An unusual transduction pathway in human tonic smooth muscle myosin.
|
| |
Biophys J, 93,
3555-3566.
|
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|
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|
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M.Suzuki,
S.Sakuda,
and
H.Nagasawa
(2007).
Identification of chitin in the prismatic layer of the shell and a chitin synthase gene from the Japanese pearl oyster, Pinctada fucata.
|
| |
Biosci Biotechnol Biochem, 71,
1735-1744.
|
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|
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N.M.Kad,
J.B.Patlak,
P.M.Fagnant,
K.M.Trybus,
and
D.M.Warshaw
(2007).
Mutation of a conserved glycine in the SH1-SH2 helix affects the load-dependent kinetics of myosin.
|
| |
Biophys J, 92,
1623-1631.
|
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|
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S.Tang,
J.C.Liao,
A.R.Dunn,
R.B.Altman,
J.A.Spudich,
and
J.P.Schmidt
(2007).
Predicting allosteric communication in myosin via a pathway of conserved residues.
|
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J Mol Biol, 373,
1361-1373.
|
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|
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T.P.Burghardt,
J.Y.Hu,
and
K.Ajtai
(2007).
Myosin dynamics on the millisecond time scale.
|
| |
Biophys Chem, 131,
15-28.
|
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|
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|
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Y.Yang,
S.Gourinath,
M.Kovács,
L.Nyitray,
R.Reutzel,
D.M.Himmel,
E.O'Neall-Hennessey,
L.Reshetnikova,
A.G.Szent-Györgyi,
J.H.Brown,
and
C.Cohen
(2007).
Rigor-like structures from muscle myosins reveal key mechanical elements in the transduction pathways of this allosteric motor.
|
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Structure, 15,
553-564.
|
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PDB codes:
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B.Geislinger,
and
R.Kawai
(2006).
Brownian molecular motors driven by rotation-translation coupling.
|
| |
Phys Rev E Stat Nonlin Soft Matter Phys, 74,
011912.
|
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|
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B.Salzameda,
K.C.Facemyer,
B.W.Beck,
and
C.R.Cremo
(2006).
The N-terminal lobes of both regulatory light chains interact with the tail domain in the 10 S-inhibited conformation of smooth muscle myosin.
|
| |
J Biol Chem, 281,
38801-38811.
|
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|
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G.Lan,
and
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(2006).
Flexible light-chain and helical structure of F-actin explain the movement and step size of myosin-VI.
|
| |
Biophys J, 91,
4002-4013.
|
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|
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|
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M.Iwaki,
H.Tanaka,
A.H.Iwane,
E.Katayama,
M.Ikebe,
and
T.Yanagida
(2006).
Cargo-binding makes a wild-type single-headed myosin-VI move processively.
|
| |
Biophys J, 90,
3643-3652.
|
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|
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|
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M.Tomishige,
N.Stuurman,
and
R.D.Vale
(2006).
Single-molecule observations of neck linker conformational changes in the kinesin motor protein.
|
| |
Nat Struct Mol Biol, 13,
887-894.
|
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|
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|
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S.Iwai,
D.Hanamoto,
and
S.Chaen
(2006).
A point mutation in the SH1 helix alters elasticity and thermal stability of myosin II.
|
| |
J Biol Chem, 281,
30736-30744.
|
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|
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|
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S.Nikolaou,
M.Hu,
N.B.Chilton,
D.Hartman,
A.J.Nisbet,
P.J.Presidente,
and
R.B.Gasser
(2006).
Isolation and characterization of class II myosin genes from Haemonchus contortus.
|
| |
Parasitol Res, 99,
200-203.
|
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|
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|
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Y.Liu,
M.Scolari,
W.Im,
and
H.J.Woo
(2006).
Protein-protein interactions in actin-myosin binding and structural effects of R405Q mutation: a molecular dynamics study.
|
| |
Proteins, 64,
156-166.
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Z.E.Sauna,
K.Nandigama,
and
S.V.Ambudkar
(2006).
Exploiting reaction intermediates of the ATPase reaction to elucidate the mechanism of transport by P-glycoprotein (ABCB1).
|
| |
J Biol Chem, 281,
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|
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C.I.Robertson,
D.P.Gaffney,
L.R.Chrin,
and
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(2005).
Structural rearrangements in the active site of smooth-muscle myosin.
|
| |
Biophys J, 89,
1882-1892.
|
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|
|
|
|
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H.J.Woo,
and
C.L.Moss
(2005).
Analytical theory of the stochastic dynamics of the power stroke in nonprocessive motor proteins.
|
| |
Phys Rev E Stat Nonlin Soft Matter Phys, 72,
051924.
|
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|
|
|
|
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J.Ménétrey,
A.Bahloul,
A.L.Wells,
C.M.Yengo,
C.A.Morris,
H.L.Sweeney,
and
A.Houdusse
(2005).
The structure of the myosin VI motor reveals the mechanism of directionality reversal.
|
| |
Nature, 435,
779-785.
|
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|
PDB codes:
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|
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M.A.Ferenczi,
S.Y.Bershitsky,
N.Koubassova,
V.Siththanandan,
W.I.Helsby,
P.Panine,
M.Roessle,
T.Narayanan,
and
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(2005).
The "roll and lock" mechanism of force generation in muscle.
|
| |
Structure, 13,
131-141.
|
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|
|
|
|
 |
P.Chen,
and
L.Zhang
(2005).
New evidences of glass transitions and microstructures of soy protein plasticized with glycerol.
|
| |
Macromol Biosci, 5,
237-245.
|
 |
|
|
|
|
 |
P.Chen,
L.Zhang,
and
F.Cao
(2005).
Effects of moisture on glass transition and microstructure of glycerol-plasticized soy protein.
|
| |
Macromol Biosci, 5,
872-880.
|
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|
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C.Mavroidis,
A.Dubey,
and
M.L.Yarmush
(2004).
Molecular machines.
|
| |
Annu Rev Biomed Eng, 6,
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|
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D.I.Levitsky
(2004).
Actomyosin systems of biological motility.
|
| |
Biochemistry (Mosc), 69,
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|
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|
|
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D.J.Manstein
(2004).
Molecular engineering of myosin.
|
| |
Philos Trans R Soc Lond B Biol Sci, 359,
1907-1912.
|
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|
|
|
|
 |
D.P.Kiehart,
J.D.Franke,
M.K.Chee,
R.A.Montague,
T.L.Chen,
J.Roote,
and
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The most recent references are shown first.
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so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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