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Calcium/phospholipid binding protein PDB id
1a4p
Jmol
Contents
Protein chains
92 a.a. *
Waters ×63
* Residue conservation analysis
PDB id:
1a4p
Name: Calcium/phospholipid binding protein
Title: P11 (s100a10), ligand of annexin ii
Structure: S100a10. Chain: a, b. Synonym: p11, calpactin light chain. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.
Biol. unit: Dimer (from PDB file)
Resolution:
2.25Å     R-factor:   0.246     R-free:   0.303
Authors: S.Rety,J.Sopkova,M.Renouard,D.Osterloh,V.Gerke,F.Russo-Marie Bentley
Key ref:
S.Réty et al. (1999). The crystal structure of a complex of p11 with the annexin II N-terminal peptide. Nat Struct Biol, 6, 89-95. PubMed id: 9886297 DOI: 10.1038/4965
Date:
30-Jan-98     Release date:   27-May-98    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P60903  (S10AA_HUMAN) -  Protein S100-A10
Seq:
Struc:
97 a.a.
92 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     extrinsic to plasma membrane   1 term 
  Biological process     cellular response to acid   3 terms 
  Biochemical function     receptor binding     2 terms  

 

 
DOI no: 10.1038/4965 Nat Struct Biol 6:89-95 (1999)
PubMed id: 9886297  
 
 
The crystal structure of a complex of p11 with the annexin II N-terminal peptide.
S.Réty, J.Sopkova, M.Renouard, D.Osterloh, V.Gerke, S.Tabaries, F.Russo-Marie, A.Lewit-Bentley.
 
  ABSTRACT  
 
The aggregation and membrane fusion properties of annexin II are modulated by the association with a regulatory light chain called p11.p11 is a member of the S100 EF-hand protein family, which is unique in having lost its calcium-binding properties. We report the first structure of a complex between p11 and its cognate peptide, the N-terminus of annexin II, as well as that of p11 alone. The basic unit for p11 is a tight, non-covalent dimer. In the complex, each annexin II peptide forms hydrophobic interactions with both p11 monomers, thus providing a structural basis for high affinity interactions between an S100 protein and its target sequence. Finally, p11 forms a disulfide-linked tetramer in both types of crystals thus suggesting a model for an oxidized form of other S100 proteins that have been found in the extracellular milieu.
 
  Selected figure(s)  
 
Figure 3.
Figure 3. Electron density (2F[o] - F[c] map, contoured at 1.5 ) of the region of interaction between the peptide and p11. Residues Glu 5 and Glu 9 from p11 and residue His 4 and the N-acetyl of the peptide are labeled.
Figure 5.
Figure 5. Electron density (2F[o] - F[c] map, contoured at 1.5 ) corresponding to the disulfide bridge observed in the p11 structure. Prepared using SETOR^45.
 
  The above figures are reprinted by permission from Macmillan Publishers Ltd: Nat Struct Biol (1999, 6, 89-95) copyright 1999.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
21046186 E.Babini, I.Bertini, V.Borsi, V.Calderone, X.Hu, C.Luchinat, and G.Parigi (2011).
Structural characterization of human S100A16, a low-affinity calcium binder.
  J Biol Inorg Chem, 16, 243-256.
PDB codes: 2l50 2l51 3nxa
21269277 L.Santamaria-Kisiel, and G.S.Shaw (2011).
Identification of regions responsible for the open conformation of S100A10 using chimaeric S100A11-S100A10 proteins.
  Biochem J, 434, 37-48.  
20085458 C.Li, T.R.Reddy, P.M.Fischer, and L.V.Dekker (2010).
A Cy5-labeled S100A10 tracer used to identify inhibitors of the protein interaction with annexin A2.
  Assay Drug Dev Technol, 8, 85-95.  
20374557 E.Umbrecht-Jenck, V.Demais, V.Calco, Y.Bailly, M.F.Bader, and S.Chasserot-Golaz (2010).
S100A10-mediated translocation of annexin-A2 to SNARE proteins in adrenergic chromaffin cells undergoing exocytosis.
  Traffic, 11, 958-971.  
19965653 J.F.Swisher, N.Burton, S.M.Bacot, S.N.Vogel, and G.M.Feldman (2010).
Annexin A2 tetramer activates human and murine macrophages through TLR4.
  Blood, 115, 549-558.  
19827097 A.Rezvanpour, J.M.Phillips, and G.S.Shaw (2009).
Design of high-affinity S100-target hybrid proteins.
  Protein Sci, 18, 2528-2536.  
19325895 A.V.Harrist, E.V.Ryzhova, T.Harvey, and F.González-Scarano (2009).
Anx2 interacts with HIV-1 Gag at phosphatidylinositol (4,5) bisphosphate-containing lipid rafts and increases viral production in 293T cells.
  PLoS ONE, 4, e5020.  
18990701 E.Morel, and J.Gruenberg (2009).
Annexin A2 binding to endosomes and functions in endosomal transport are regulated by tyrosine 23 phosphorylation.
  J Biol Chem, 284, 1604-1611.  
19844956 N.R.West, B.Farnell, J.I.Murray, F.Hof, P.H.Watson, and M.J.Boulanger (2009).
Structural and functional characterization of a triple mutant form of S100A7 defective for Jab1 binding.
  Protein Sci, 18, 2615-2623.
PDB code: 2wnd
19275165 W.W.Streicher, M.M.Lopez, and G.I.Makhatadze (2009).
Annexin I and annexin II N-terminal peptides binding to S100 protein family members: specificity and thermodynamic characterization.
  Biochemistry, 48, 2788-2798.  
18795951 A.C.Rintala-Dempsey, A.Rezvanpour, and G.S.Shaw (2008).
S100-annexin complexes--structural insights.
  FEBS J, 275, 4956-4966.  
  18523305 D.L.Cecil, and R.Terkeltaub (2008).
Transamidation by transglutaminase 2 transforms S100A11 calgranulin into a procatabolic cytokine for chondrocytes.
  J Immunol, 180, 8378-8385.  
18389276 G.Tamma, G.Procino, M.G.Mola, M.Svelto, and G.Valenti (2008).
Functional involvement of Annexin-2 in cAMP induced AQP2 trafficking.
  Pflugers Arch, 456, 729-736.  
18725408 J.Austermann, A.R.Nazmi, C.Müller-Tidow, and V.Gerke (2008).
Characterization of the Ca2+ -regulated ezrin-S100P interaction and its role in tumor cell migration.
  J Biol Chem, 283, 29331-29340.  
18004751 J.W.Torrance, M.W.Macarthur, and J.M.Thornton (2008).
Evolution of binding sites for zinc and calcium ions playing structural roles.
  Proteins, 71, 813-830.  
18694925 M.R.Fernandez-Fernandez, T.J.Rutherford, and A.R.Fersht (2008).
Members of the S100 family bind p53 in two distinct ways.
  Protein Sci, 17, 1663-1670.  
18508775 M.Zibouche, M.Vincent, F.Illien, J.Gallay, and J.Ayala-Sanmartin (2008).
The N-terminal domain of annexin 2 serves as a secondary binding site during membrane bridging.
  J Biol Chem, 283, 22121-22127.  
18783790 P.Pathuri, L.Vogeley, and H.Luecke (2008).
Crystal structure of metastasis-associated protein S100A4 in the active calcium-bound form.
  J Mol Biol, 383, 62-77.
PDB code: 3cga
18675323 R.Pattarini, Y.Rong, C.Qu, and J.I.Morgan (2008).
Distinct mechanisms of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyrimidine resistance revealed by transcriptome mapping in mouse striatum.
  Neuroscience, 155, 1174-1194.  
18384084 S.Malik, M.Revington, S.P.Smith, and G.S.Shaw (2008).
Analysis of the structure of human apo-S100B at low temperature indicates a unimodal conformational distribution is adopted by calcium-free S100 proteins.
  Proteins, 73, 28-42.
PDB code: 2pru
17638009 U.Rescher, and V.Gerke (2008).
S100A10/p11: family, friends and functions.
  Pflugers Arch, 455, 575-582.  
18410126 V.N.Malashkevich, K.M.Varney, S.C.Garrett, P.T.Wilder, D.Knight, T.H.Charpentier, U.A.Ramagopal, S.C.Almo, D.J.Weber, and A.R.Bresnick (2008).
Structure of Ca2+-bound S100A4 and its interaction with peptides derived from nonmuscle myosin-IIA.
  Biochemistry, 47, 5111-5126.
PDB code: 2q91
18065419 W.Tian, G.T.Wijewickrama, J.H.Kim, S.Das, M.P.Tun, N.Gokhale, J.W.Jung, K.P.Kim, and W.Cho (2008).
Mechanism of regulation of group IVA phospholipase A2 activity by Ser727 phosphorylation.
  J Biol Chem, 283, 3960-3971.  
18558076 X.Shang, H.Cheng, and R.Zhou (2008).
Chromosomal mapping, differential origin and evolution of the S100 gene family.
  Genet Sel Evol, 40, 449-464.  
18803400 Y.T.Lee, Y.N.Dimitrova, G.Schneider, W.B.Ridenour, S.Bhattacharya, S.E.Soss, R.M.Caprioli, A.Filipek, and W.J.Chazin (2008).
Structure of the S100A6 complex with a fragment from the C-terminal domain of Siah-1 interacting protein: a novel mode for S100 protein target recognition.
  Biochemistry, 47, 10921-10932.
PDB code: 2jtt
17607745 D.M.Schulz, S.Kalkhof, A.Schmidt, C.Ihling, C.Stingl, K.Mechtler, O.Zschörnig, and A.Sinz (2007).
Annexin A2/P11 interaction: new insights into annexin A2 tetramer structure by chemical crosslinking, high-resolution mass spectrometry, and computational modeling.
  Proteins, 69, 254-269.  
17971878 E.Morel, and J.Gruenberg (2007).
The p11/S100A10 Light Chain of Annexin A2 Is Dispensable for Annexin A2 Association to Endosomes and Functions in Endosomal Transport.
  PLoS ONE, 2, e1118.  
17158877 J.Xie, D.S.Burz, W.He, I.B.Bronstein, I.Lednev, and A.Shekhtman (2007).
Hexameric calgranulin C (S100A12) binds to the receptor for advanced glycated end products (RAGE) using symmetric hydrophobic target-binding patches.
  J Biol Chem, 282, 4218-4231.  
17159909 K.C.Lee, and R.L.Eckert (2007).
S100A7 (Psoriasin)--mechanism of antibacterial action in wounds.
  J Invest Dermatol, 127, 945-957.  
17581860 L.A.Borthwick, J.McGaw, G.Conner, C.J.Taylor, V.Gerke, A.Mehta, L.Robson, and R.Muimo (2007).
The formation of the cAMP/protein kinase A-dependent annexin 2-S100A10 complex with cystic fibrosis conductance regulator protein (CFTR) regulates CFTR channel function.
  Mol Biol Cell, 18, 3388-3397.  
17714509 T.Uebi, N.Miwa, and S.Kawamura (2007).
Comprehensive interaction of dicalcin with annexins in frog olfactory and respiratory cilia.
  FEBS J, 274, 4863-4876.  
16569618 A.Tabata, F.Namba, M.Yamada, T.Hasegawa, K.Nakahira, D.Hamada, H.Kitajima, E.Fukusaki, and I.Yanagihara (2006).
Expression and purification of recombinant human annexin A2 in Pichia pastoris and utility of expression product for detecting annexin A2 antibody.
  J Biosci Bioeng, 101, 190-197.  
16957918 F.Capozzi, F.Casadei, and C.Luchinat (2006).
EF-hand protein dynamics and evolution of calcium signal transduction: an NMR view.
  J Biol Inorg Chem, 11, 949-962.  
  16682778 K.M.Boeshans, R.Wolf, C.Voscopoulos, W.Gillette, D.Esposito, T.C.Mueser, S.H.Yuspa, and B.Ahvazi (2006).
Purification, crystallization and preliminary X-ray diffraction of human S100A15.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 62, 467-470.  
16432210 M.Ikura, and J.B.Ames (2006).
Genetic polymorphism and protein conformational plasticity in the calmodulin superfamily: two ways to promote multifunctionality.
  Proc Natl Acad Sci U S A, 103, 1159-1164.  
16984913 S.De Seranno, C.Benaud, N.Assard, S.Khediri, V.Gerke, J.Baudier, and C.Delphin (2006).
Identification of an AHNAK binding motif specific for the Annexin2/S100A10 tetramer.
  J Biol Chem, 281, 35030-35038.  
16420525 V.Renigunta, H.Yuan, M.Zuzarte, S.Rinné, A.Koch, E.Wischmeyer, G.Schlichthörl, Y.Gao, A.Karschin, R.Jacob, B.Schwappach, J.Daut, and R.Preisig-Müller (2006).
The retention factor p11 confers an endoplasmic reticulum-localization signal to the potassium channel TASK-1.
  Traffic, 7, 168-181.  
15788416 A.Semov, M.J.Moreno, A.Onichtchenko, A.Abulrob, M.Ball, I.Ekiel, G.Pietrzynski, D.Stanimirovic, and V.Alakhov (2005).
Metastasis-associated protein S100A4 induces angiogenesis through interaction with Annexin II and accelerated plasmin formation.
  J Biol Chem, 280, 20833-20841.  
16169854 E.Donier, F.Rugiero, K.Okuse, and J.N.Wood (2005).
Annexin II light chain p11 promotes functional expression of acid-sensing ion channel ASIC1a.
  J Biol Chem, 280, 38666-38672.  
16230353 N.A.Gokhale, A.Abraham, M.A.Digman, E.Gratton, and W.Cho (2005).
Phosphoinositide specificity of and mechanism of lipid domain formation by annexin A2-p11 heterotetramer.
  J Biol Chem, 280, 42831-42840.  
15635098 S.Chasserot-Golaz, N.Vitale, E.Umbrecht-Jenck, D.Knight, V.Gerke, and M.F.Bader (2005).
Annexin 2 promotes the formation of lipid microdomains required for calcium-regulated exocytosis of dense-core vesicles.
  Mol Biol Cell, 16, 1108-1119.  
15928709 V.Gerke, C.E.Creutz, and S.E.Moss (2005).
Annexins: linking Ca2+ signalling to membrane dynamics.
  Nat Rev Mol Cell Biol, 6, 449-461.  
15239061 M.Menke, M.Ross, V.Gerke, and C.Steinem (2004).
The molecular arrangement of membrane-bound annexin A2-S100A10 tetramer as revealed by scanning force microscopy.
  Chembiochem, 5, 1003-1006.  
14701819 O.Lambert, N.Cavusoglu, J.Gallay, M.Vincent, J.L.Rigaud, J.P.Henry, and J.Ayala-Sanmartin (2004).
Novel organization and properties of annexin 2-membrane complexes.
  J Biol Chem, 279, 10872-10882.  
15191538 R.L.Eckert, A.M.Broome, M.Ruse, N.Robinson, D.Ryan, and K.Lee (2004).
S100 proteins in the epidermis.
  J Invest Dermatol, 123, 23-33.  
  12842051 A.C.Dempsey, M.P.Walsh, and G.S.Shaw (2003).
Unmasking the annexin I interaction from the structure of Apo-S100A11.
  Structure, 11, 887-897.
PDB code: 1nsh
12601007 A.Tomas, and S.E.Moss (2003).
Calcium- and cell cycle-dependent association of annexin 11 with the nuclear envelope.
  J Biol Chem, 278, 20210-20216.  
12645003 D.B.Zimmer, P.Wright Sadosky, and D.J.Weber (2003).
Molecular mechanisms of S100-target protein interactions.
  Microsc Res Tech, 60, 552-559.  
12645004 J.C.Deloulme, B.J.Gentil, and J.Baudier (2003).
Monitoring of S100 homodimerization and heterodimeric interactions by the yeast two-hybrid system.
  Microsc Res Tech, 60, 560-568.  
12480931 K.A.McClintock, and G.S.Shaw (2003).
A novel S100 target conformation is revealed by the solution structure of the Ca2+-S100B-TRTK-12 complex.
  J Biol Chem, 278, 6251-6257.
PDB code: 1mq1
12808036 M.Koltzscher, C.Neumann, S.König, and V.Gerke (2003).
Ca2+-dependent binding and activation of dormant ezrin by dimeric S100P.
  Mol Biol Cell, 14, 2372-2384.  
12871972 M.Nagae, A.Nozawa, N.Koizumi, H.Sano, H.Hashimoto, M.Sato, and T.Shimizu (2003).
The crystal structure of the novel calcium-binding protein AtCBL2 from Arabidopsis thaliana.
  J Biol Chem, 278, 42240-42246.
PDB code: 1uhn
12839987 N.Mayran, R.G.Parton, and J.Gruenberg (2003).
Annexin II regulates multivesicular endosome biogenesis in the degradation pathway of animal cells.
  EMBO J, 22, 3242-3253.  
14661952 S.Bhattacharya, E.Large, C.W.Heizmann, B.Hemmings, and W.J.Chazin (2003).
Structure of the Ca2+/S100B/NDR kinase peptide complex: insights into S100 target specificity and activation of the kinase.
  Biochemistry, 42, 14416-14426.
PDB code: 1psb
  12842036 S.Bhattacharya, and W.J.Chazin (2003).
Calcium-driven changes in S100A11 structure revealed.
  Structure, 11, 738-740.  
12660155 S.F.van de Graaf, J.G.Hoenderop, D.Gkika, D.Lamers, J.Prenen, U.Rescher, V.Gerke, O.Staub, B.Nilius, and R.J.Bindels (2003).
Functional expression of the epithelial Ca(2+) channels (TRPV5 and TRPV6) requires association of the S100A10-annexin 2 complex.
  EMBO J, 22, 1478-1487.  
12730231 T.J.MacLeod, M.Kwon, N.R.Filipenko, and D.M.Waisman (2003).
Phospholipid-associated annexin A2-S100A10 heterotetramer and its subunits: characterization of the interaction with tissue plasminogen activator, plasminogen, and plasmin.
  J Biol Chem, 278, 25577-25584.  
12645005 W.Nacken, J.Roth, C.Sorg, and C.Kerkhoff (2003).
S100A9/S100A8: Myeloid representatives of the S100 protein family as prominent players in innate immunity.
  Microsc Res Tech, 60, 569-580.  
14640694 Z.H.Li, A.Spektor, O.Varlamova, and A.R.Bresnick (2003).
Mts1 regulates the assembly of nonmuscle myosin-IIA.
  Biochemistry, 42, 14258-14266.  
12042313 A.Filipek, B.Jastrzebska, M.Nowotny, and J.Kuznicki (2002).
CacyBP/SIP, a calcyclin and Siah-1-interacting protein, binds EF-hand proteins of the S100 family.
  J Biol Chem, 277, 28848-28852.  
12021435 A.V.Gribenko, M.Guzmán-Casado, M.M.Lopez, and G.I.Makhatadze (2002).
Conformational and thermodynamic properties of peptide binding to the human S100P protein.
  Protein Sci, 11, 1367-1375.  
12198146 C.Girard, N.Tinel, C.Terrenoire, G.Romey, M.Lazdunski, and M.Borsotto (2002).
p11, an annexin II subunit, an auxiliary protein associated with the background K+ channel, TASK-1.
  EMBO J, 21, 4439-4448.  
12045193 G.Fritz, P.R.Mittl, M.Vasak, M.G.Grutter, and C.W.Heizmann (2002).
The crystal structure of metal-free human EF-hand protein S100A3 at 1.7-A resolution.
  J Biol Chem, 277, 33092-33098.  
  11937060 L.R.Otterbein, J.Kordowska, C.Witte-Hoffmann, C.L.Wang, and R.Dominguez (2002).
Crystal structures of S100A6 in the Ca(2+)-free and Ca(2+)-bound states: the calcium sensor mechanism of S100 proteins revealed at atomic resolution.
  Structure, 10, 557-567.
PDB codes: 1k8u 1k96 1k9k 1k9p
11909870 R.A.Maxwell, W.H.Welch, F.M.Horodyski, K.M.Schegg, and D.A.Schooley (2002).
Juvenile hormone diol kinase. II. Sequencing, cloning, and molecular modeling of juvenile hormone-selective diol kinase from Manduca sexta.
  J Biol Chem, 277, 21882-21890.  
12076258 T.Hansen (2002).
No immunosuppressive effect of transfected annexin II.
  APMIS, 110, 403-409.  
11297409 K.G.Inman, D.M.Baldisseri, K.E.Miller, and D.J.Weber (2001).
Backbone dynamics of the calcium-signaling protein apo-S100B as determined by 15N NMR relaxation.
  Biochemistry, 40, 3439-3448.  
11258932 M.Ruse, A.Lambert, N.Robinson, D.Ryan, K.J.Shon, and R.L.Eckert (2001).
S100A7, S100A10, and S100A11 are transglutaminase substrates.
  Biochemistry, 40, 3167-3173.  
  11390274 R.Donato (2001).
S100: a multigenic family of calcium-modulated proteins of the EF-hand type with intracellular and extracellular functional roles.
  Int J Biochem Cell Biol, 33, 637-668.  
11114499 A.Lewit-Bentley, and S.Réty (2000).
EF-hand calcium-binding proteins.
  Curr Opin Struct Biol, 10, 637-643.  
11108962 J.Sopkova-de Oliveira Santos, F.K.Oling, S.Réty, A.Brisson, J.C.Smith, and A.Lewit-Bentley (2000).
S100 protein-annexin interactions: a model of the (Anx2-p11)(2) heterotetramer complex.
  Biochim Biophys Acta, 1498, 181-191.  
10924150 M.Koltzscher, and V.Gerke (2000).
Identification of hydrophobic amino acid residues involved in the formation of S100P homodimers in vivo.
  Biochemistry, 39, 9533-9539.  
  10673436 S.Réty, D.Osterloh, J.P.Arié, S.Tabaries, J.Seeman, F.Russo-Marie, V.Gerke, and A.Lewit-Bentley (2000).
Structural basis of the Ca(2+)-dependent association between S100C (S100A11) and its target, the N-terminal part of annexin I.
  Structure, 8, 175-184.
PDB code: 1qls
10591109 K.L.Yap, J.B.Ames, M.B.Swindells, and M.Ikura (1999).
Diversity of conformational states and changes within the EF-hand protein superfamily.
  Proteins, 37, 499-507.  
10395934 R.Donato (1999).
Functional roles of S100 proteins, calcium-binding proteins of the EF-hand type.
  Biochim Biophys Acta, 1450, 191-231.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.