Literature references that cite this PDB file's
key reference
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PubMed id
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Reference
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A.J.Fusco,
D.B.Huang,
D.Miller,
V.Y.Wang,
D.Vu,
and
G.Ghosh
(2009).
NF-kappaB p52:RelB heterodimer recognizes two classes of kappaB sites with two distinct modes.
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EMBO Rep, 10,
152-159.
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T.Huxford,
and
G.Ghosh
(2009).
A structural guide to proteins of the NF-kappaB signaling module.
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Cold Spring Harbor Perspect Biol, 1,
a000075.
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C.Mura,
and
J.A.McCammon
(2008).
Molecular dynamics of a kappaB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation.
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Nucleic Acids Res, 36,
4941-4955.
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S.Raza,
K.A.Robertson,
P.A.Lacaze,
D.Page,
A.J.Enright,
P.Ghazal,
and
T.C.Freeman
(2008).
A logic-based diagram of signalling pathways central to macrophage activation.
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BMC Syst Biol, 2,
36.
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F.Spyrakis,
P.Cozzini,
C.Bertoli,
A.Marabotti,
G.E.Kellogg,
and
A.Mozzarelli
(2007).
Energetics of the protein-DNA-water interaction.
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BMC Struct Biol, 7,
4.
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G.Qing,
Z.Qu,
and
G.Xiao
(2007).
Endoproteolytic processing of C-terminally truncated NF-kappaB2 precursors at kappaB-containing promoters.
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Proc Natl Acad Sci U S A, 104,
5324-5329.
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A.Hoffmann,
G.Natoli,
and
G.Ghosh
(2006).
Transcriptional regulation via the NF-kappaB signaling module.
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Oncogene, 25,
6706-6716.
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K.Schumm,
S.Rocha,
J.Caamano,
and
N.D.Perkins
(2006).
Regulation of p53 tumour suppressor target gene expression by the p52 NF-kappaB subunit.
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EMBO J, 25,
4820-4832.
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A.S.Romanenkov,
A.A.Ustyugov,
T.S.Zatsepin,
A.A.Nikulova,
I.V.Kolesnikov,
V.G.Metelev,
T.S.Oretskaya,
and
E.A.Kubareva
(2005).
Analysis of DNA-protein interactions in complexes of transcription factor NF-kappaB with DNA.
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Biochemistry (Mosc), 70,
1212-1222.
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R.Fagerlund,
L.Kinnunen,
M.Köhler,
I.Julkunen,
and
K.Melén
(2005).
NF-{kappa}B is transported into the nucleus by importin {alpha}3 and importin {alpha}4.
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J Biol Chem, 280,
15942-15951.
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S.C.Sun,
and
S.Yamaoka
(2005).
Activation of NF-kappaB by HTLV-I and implications for cell transformation.
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Oncogene, 24,
5952-5964.
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D.Angelov,
F.Lenouvel,
F.Hans,
C.W.Müller,
P.Bouvet,
J.Bednar,
E.N.Moudrianakis,
J.Cadet,
and
S.Dimitrov
(2004).
The histone octamer is invisible when NF-kappaB binds to the nucleosome.
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J Biol Chem, 279,
42374-42382.
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G.Xiao,
A.Fong,
and
S.C.Sun
(2004).
Induction of p100 processing by NF-kappaB-inducing kinase involves docking IkappaB kinase alpha (IKKalpha) to p100 and IKKalpha-mediated phosphorylation.
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J Biol Chem, 279,
30099-30105.
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S.Cheek,
Y.Qi,
S.S.Krishna,
L.N.Kinch,
and
N.V.Grishin
(2004).
4SCOPmap: automated assignment of protein structures to evolutionary superfamilies.
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BMC Bioinformatics, 5,
197.
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Z.Qu,
G.Qing,
A.Rabson,
and
G.Xiao
(2004).
Tax deregulation of NF-kappaB2 p100 processing involves both beta-TrCP-dependent and -independent mechanisms.
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J Biol Chem, 279,
44563-44572.
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A.Nijnik,
R.Mott,
D.P.Kwiatkowski,
and
I.A.Udalova
(2003).
Comparing the fine specificity of DNA binding by NF-kappaB p50 and p52 using principal coordinates analysis.
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Nucleic Acids Res, 31,
1497-1501.
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B.Rayet,
Y.Fan,
and
C.Gélinas
(2003).
Mutations in the v-Rel transactivation domain indicate altered phosphorylation and identify a subset of NF-kappaB-regulated cell death inhibitors important for v-Rel transforming activity.
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Mol Cell Biol, 23,
1520-1533.
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D.Angelov,
M.Charra,
C.W.Müller,
J.Cadet,
and
S.Dimitrov
(2003).
Solution study of the NF-kappaB p50-DNA complex by UV laser protein-DNA cross-linking.
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Photochem Photobiol, 77,
592-596.
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D.B.Huang,
D.Vu,
L.A.Cassiday,
J.M.Zimmerman,
L.J.Maher,
and
G.Ghosh
(2003).
Crystal structure of NF-kappaB (p50)2 complexed to a high-affinity RNA aptamer.
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Proc Natl Acad Sci U S A, 100,
9268-9273.
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PDB code:
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H.R.Mott,
D.Nietlispach,
L.J.Hopkins,
G.Mirey,
J.H.Camonis,
and
D.Owen
(2003).
Structure of the GTPase-binding domain of Sec5 and elucidation of its Ral binding site.
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J Biol Chem, 278,
17053-17059.
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PDB code:
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A.S.Liss,
and
H.R.Bose
(2002).
Mutational analysis of the v-Rel dimerization interface reveals a critical role for v-Rel homodimers in transformation.
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J Virol, 76,
4928-4939.
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B.Berkowitz,
D.B.Huang,
F.E.Chen-Park,
P.B.Sigler,
and
G.Ghosh
(2002).
The x-ray crystal structure of the NF-kappa B p50.p65 heterodimer bound to the interferon beta -kappa B site.
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J Biol Chem, 277,
24694-24700.
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PDB codes:
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F.E.Chen-Park,
D.B.Huang,
B.Noro,
D.Thanos,
and
G.Ghosh
(2002).
The kappa B DNA sequence from the HIV long terminal repeat functions as an allosteric regulator of HIV transcription.
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J Biol Chem, 277,
24701-24708.
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PDB code:
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J.C.Stroud,
C.Lopez-Rodriguez,
A.Rao,
and
L.Chen
(2002).
Structure of a TonEBP-DNA complex reveals DNA encircled by a transcription factor.
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Nat Struct Biol, 9,
90-94.
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PDB code:
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K.Wecker,
M.C.Bonnet,
E.F.Meurs,
and
M.Delepierre
(2002).
The role of the phosphorus BI-BII transition in protein-DNA recognition: the NF-kappaB complex.
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Nucleic Acids Res, 30,
4452-4459.
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L.F.Onuchic,
L.Furu,
Y.Nagasawa,
X.Hou,
T.Eggermann,
Z.Ren,
C.Bergmann,
J.Senderek,
E.Esquivel,
R.Zeltner,
S.Rudnik-Schöneborn,
M.Mrug,
W.Sweeney,
E.D.Avner,
K.Zerres,
L.M.Guay-Woodford,
S.Somlo,
and
G.G.Germino
(2002).
PKHD1, the polycystic kidney and hepatic disease 1 gene, encodes a novel large protein containing multiple immunoglobulin-like plexin-transcription-factor domains and parallel beta-helix 1 repeats.
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Am J Hum Genet, 70,
1305-1317.
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R.E.Speight,
D.J.Hart,
and
J.M.Blackburn
(2002).
Distamycin A affects the stability of NF-kappaB p50-DNA complexes in a sequence-dependent manner.
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J Mol Recognit, 15,
19-26.
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F.Michel,
M.Soler-Lopez,
C.Petosa,
P.Cramer,
U.Siebenlist,
and
C.W.Müller
(2001).
Crystal structure of the ankyrin repeat domain of Bcl-3: a unique member of the IkappaB protein family.
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EMBO J, 20,
6180-6190.
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PDB codes:
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G.Xiao,
M.E.Cvijic,
A.Fong,
E.W.Harhaj,
M.T.Uhlik,
M.Waterfield,
and
S.C.Sun
(2001).
Retroviral oncoprotein Tax induces processing of NF-kappaB2/p100 in T cells: evidence for the involvement of IKKalpha.
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EMBO J, 20,
6805-6815.
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J.P.Menetski
(2000).
The structure of the nuclear factor-kappaB protein-DNA complex varies with DNA-binding site sequence.
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J Biol Chem, 275,
7619-7625.
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P.Cramer,
D.A.Bushnell,
J.Fu,
A.L.Gnatt,
B.Maier-Davis,
N.E.Thompson,
R.R.Burgess,
A.M.Edwards,
P.R.David,
and
R.D.Kornberg
(2000).
Architecture of RNA polymerase II and implications for the transcription mechanism.
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Science, 288,
640-649.
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PDB code:
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C.Mischiati,
M.Borgatti,
N.Bianchi,
C.Rutigliano,
M.Tomassetti,
G.Feriotto,
and
R.Gambari
(1999).
Interaction of the human NF-kappaB p52 transcription factor with DNA-PNA hybrids mimicking the NF-kappaB binding sites of the human immunodeficiency virus type 1 promoter.
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J Biol Chem, 274,
33114-33122.
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T.Huxford,
S.Malek,
and
G.Ghosh
(1999).
Structure and mechanism in NF-kappa B/I kappa B signaling.
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Cold Spring Harb Symp Quant Biol, 64,
533-540.
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X.M.Zhang,
and
G.L.Verdine
(1999).
A small region in HMG I(Y) is critical for cooperation with NF-kappaB on DNA.
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J Biol Chem, 274,
20235-20243.
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S.Becker,
B.Groner,
and
C.W.Müller
(1998).
Three-dimensional structure of the Stat3beta homodimer bound to DNA.
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Nature, 394,
145-151.
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PDB code:
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S.Malek,
T.Huxford,
and
G.Ghosh
(1998).
Ikappa Balpha functions through direct contacts with the nuclear localization signals and the DNA binding sequences of NF-kappaB.
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J Biol Chem, 273,
25427-25435.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
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Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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