 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Glycosyl hydrolase
|
PDB id
|
|
|
|
1ups
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
|
|
|
|
* Residue conservation analysis
|
|
|
|
|
|
PDB id:
|
|
|
|
| Name: |
|
Glycosyl hydrolase
|
|
|
Title:
|
|
Glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase from clostridium perfringens
|
|
Structure:
|
|
Glcnac-alpha-1,4-gal-releasing endo-beta- galactosidase. Chain: a, b. Engineered: yes
|
|
Source:
|
|
Clostridium perfringens. Organism_taxid: 1502. Atcc: 10543. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
Resolution:
|
|
|
1.82Å
|
R-factor:
|
0.177
|
R-free:
|
0.204
|
|
|
Authors:
|
|
W.Tempel,Z.-J.Liu,P.S.Horanyi,L.Deng,D.Lee,M.G.Newton, J.P.Rose,H.Ashida,S.-C.Li,Y.-T.Li,B.-C.Wang, Southeast Collaboratory For Structural Genomics (Secsg)
|
Key ref:
|
|
W.Tempel
et al.
(2005).
Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens.
Proteins,
59,
141-144.
PubMed id:
DOI:
|
|
|
Date:
|
|
|
10-Oct-03
|
Release date:
|
25-Nov-04
|
|
|
|
|
|
|
PROCHECK
|
|
|
|
|
|
Headers
|
|
|
|
References
|
|
|
|
|
|
|
|
Q934G8
(Q934G8_CLOPE) -
GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase
|
|
|
|
Seq:
Struc:
|
|
|
|
420 a.a.
402 a.a.
|
|
|
|
|
|
|
|
|
|
|
|
|
Key: |
 |
PfamA domain |
|
|
 |
Secondary structure |
|
 |
CATH domain |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Gene Ontology (GO) functional annotation
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Biological process
|
carbohydrate metabolic process
|
1 term
|
|
|
Biochemical function
|
hydrolase activity, hydrolyzing O-glycosyl compounds
|
1 term
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
| |
|
DOI no:
|
Proteins
59:141-144
(2005)
|
|
PubMed id:
|
|
|
|
|
|
| |
|
Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens.
|
|
W.Tempel,
Z.J.Liu,
P.S.Horanyi,
L.Deng,
D.Lee,
M.G.Newton,
J.P.Rose,
H.Ashida,
S.C.Li,
Y.T.Li,
B.C.Wang.
|
|
|
|
|
| |
ABSTRACT
|
|
|
|
| |
|
|
|
|
| |
Selected figure(s)
|
|
|
|
| |
|
|
|
|
|
|
Figure 1.
Figure 1. Stereographic cartoon of the Endo-  -Gal[GnGa]
molecule. The partially disordered loop connecting the 2
globular domains is represented as a dashed line.
|
|
Figure 2.
Figure 2. The -strand
topology of Endo- -Gal[GNGa].
The larger N-terminal domain consists of a -sheet
sandwich. The smaller C-terminal domain is an assembly of 6
double-stranded sheets. For clarity, the length of strand
symbols and linkers do not represent their relative sizes in the
peptide. Coloring roughly corresponds to that in Figure 1.
|
|
|
|
|
|
| |
The above figures are
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2005,
59,
141-144)
copyright 2005.
|
|
| |
Figures were
selected
by an automated process.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
 |
 |
|
Literature references that cite this PDB file's key reference
|
|
|
| |
PubMed id
|
|
Reference
|
|
|
|
|
|
T.Y.Hong,
Y.Y.Hsiao,
M.Meng,
and
T.T.Li
(2008).
The 1.5 A structure of endo-1,3-beta-glucanase from Streptomyces sioyaensis: evolution of the active-site structure for 1,3-beta-glucan-binding specificity and hydrolysis.
|
| |
Acta Crystallogr D Biol Crystallogr, 64,
964-970.
|
|
|
PDB code:
|
|
|
|
|
|
|
|
G.Michel,
P.Nyval-Collen,
T.Barbeyron,
M.Czjzek,
and
W.Helbert
(2006).
Bioconversion of red seaweed galactans: a focus on bacterial agarases and carrageenases.
|
| |
Appl Microbiol Biotechnol, 71,
23-33.
|
|
|
|
|
|
The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
|
|
Links
