Literature references that cite this PDB file's
key reference
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PubMed id
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Reference
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B.Mertz,
X.Gu,
and
P.J.Reilly
(2009).
Analysis of functional divergence within two structurally related glycoside hydrolase families.
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Biopolymers, 91,
478-495.
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B.Yang,
G.Yu,
X.Zhao,
G.Jiao,
S.Ren,
and
W.Chai
(2009).
Mechanism of mild acid hydrolysis of galactan polysaccharides with highly ordered disaccharide repeats leading to a complete series of exclusively odd-numbered oligosaccharides.
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FEBS J, 276,
2125-2137.
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X.Lu,
Y.Chu,
Q.Wu,
Y.Gu,
F.Han,
and
W.Yu
(2009).
Cloning, expression and characterization of a new agarase-encoding gene from marine Pseudoalteromonas sp.
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Biotechnol Lett, 31,
1565-1570.
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C.Shi,
X.Lu,
C.Ma,
Y.Ma,
X.Fu,
and
W.Yu
(2008).
Enhancing the thermostability of a novel beta-agarase AgaB through directed evolution.
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Appl Biochem Biotechnol, 151,
51-59.
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L.C.Tsai,
H.C.Huang,
C.H.Hsiao,
Y.N.Chiang,
L.F.Shyur,
Y.S.Lin,
and
S.H.Lee
(2008).
Mutational and structural studies of the active-site residues in truncated Fibrobacter succinogenes1,3-1,4-beta-D-glucanase.
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Acta Crystallogr D Biol Crystallogr, 64,
1259-1266.
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D.Flament,
T.Barbeyron,
M.Jam,
P.Potin,
M.Czjzek,
B.Kloareg,
and
G.Michel
(2007).
Alpha-agarases define a new family of glycoside hydrolases, distinct from beta-agarase families.
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Appl Environ Microbiol, 73,
4691-4694.
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J.Dong,
Y.Tamaru,
and
T.Araki
(2007).
A unique beta-agarase, AgaA, from a marine bacterium, Vibrio sp. strain PO-303.
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Appl Microbiol Biotechnol, 74,
1248-1255.
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J.Dong,
Y.Tamaru,
and
T.Araki
(2007).
Molecular cloning, expression, and characterization of a beta-agarase gene, agaD, from a marine bacterium, Vibrio sp. strain PO-303.
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Biosci Biotechnol Biochem, 71,
38-46.
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R.Chiaraluce,
R.Florio,
S.Angelaccio,
G.Gianese,
J.F.van Lieshout,
J.van der Oost,
and
V.Consalvi
(2007).
Tertiary structure in 7.9 M guanidinium chloride--the role of Glu53 and Asp287 in Pyrococcus furiosus endo-beta-1,3-glucanase.
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FEBS J, 274,
6167-6179.
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W.W.Zhang,
and
L.Sun
(2007).
Cloning, characterization, and molecular application of a beta-agarase gene from Vibrio sp. strain V134.
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Appl Environ Microbiol, 73,
2825-2831.
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A.Giordano,
G.Andreotti,
A.Tramice,
and
A.Trincone
(2006).
Marine glycosyl hydrolases in the hydrolysis and synthesis of oligosaccharides.
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Biotechnol J, 1,
511-530.
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D.G.Lee,
G.T.Park,
N.Y.Kim,
E.J.Lee,
M.K.Jang,
Y.G.Shin,
G.S.Park,
T.M.Kim,
J.H.Lee,
J.H.Lee,
S.J.Kim,
and
S.H.Lee
(2006).
Cloning, expression, and characterization of a glycoside hydrolase family 50 beta-agarase from a marine Agarivorans isolate.
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Biotechnol Lett, 28,
1925-1932.
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G.Michel,
P.Nyval-Collen,
T.Barbeyron,
M.Czjzek,
and
W.Helbert
(2006).
Bioconversion of red seaweed galactans: a focus on bacterial agarases and carrageenases.
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Appl Microbiol Biotechnol, 71,
23-33.
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J.Vasur,
R.Kawai,
A.M.Larsson,
K.Igarashi,
M.Sandgren,
M.Samejima,
and
J.Ståhlberg
(2006).
X-ray crystallographic native sulfur SAD structure determination of laminarinase Lam16A from Phanerochaete chrysosporium.
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Acta Crystallogr D Biol Crystallogr, 62,
1422-1429.
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PDB code:
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K.N.Neustroev,
A.M.Golubev,
M.L.Sinnott,
R.Borriss,
M.Krah,
H.Brumer,
E.V.Eneyskaya,
S.Shishlyannikov,
K.A.Shabalin,
V.T.Peshechonov,
V.G.Korolev,
and
A.A.Kulminskaya
(2006).
Transferase and hydrolytic activities of the laminarinase from Rhodothermus marinus and its M133A, M133C, and M133W mutants.
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Glycoconj J, 23,
501-511.
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N.A.Ekborg,
L.E.Taylor,
A.G.Longmire,
B.Henrissat,
R.M.Weiner,
and
S.W.Hutcheson
(2006).
Genomic and proteomic analyses of the agarolytic system expressed by Saccharophagus degradans 2-40.
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Appl Environ Microbiol, 72,
3396-3405.
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V.Receveur-Bréchot,
M.Czjzek,
A.Barre,
A.Roussel,
W.J.Peumans,
E.J.Van Damme,
and
P.Rougé
(2006).
Crystal structure at 1.45-A resolution of the major allergen endo-beta-1,3-glucanase of banana as a molecular basis for the latex-fruit syndrome.
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Proteins, 63,
235-242.
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PDB code:
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Y.Ohta,
Y.Hatada,
M.Miyazaki,
Y.Nogi,
S.Ito,
and
K.Horikoshi
(2005).
Purification and characterization of a novel alpha-agarase from a Thalassomonas sp.
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Curr Microbiol, 50,
212-216.
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A.Ilari,
S.Angelaccio,
A.Fiorillo,
R.Florio,
V.Consalvi,
and
R.Chiaraluce
(2004).
Crystalization and preliminary X-ray crystallographic analysis of the laminarinase endo-beta-1,3-glucanase from Pyrococcus furiosus.
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Acta Crystallogr D Biol Crystallogr, 60,
2394-2395.
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Y.Ohta,
Y.Hatada,
Y.Nogi,
Z.Li,
S.Ito,
and
K.Horikoshi
(2004).
Cloning, expression, and characterization of a glycoside hydrolase family 86 beta-agarase from a deep-sea Microbulbifer-like isolate.
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Appl Microbiol Biotechnol, 66,
266-275.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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295 a.a.
_NA
_MG
(1, 4) bond cleaved during catalysis is labeled. b, organization of the modules of
