PDBsum entry: 1nlr

Endoglucanase

PDB id: 1nlr

Contents

Protein chain

222 a.a. *

Waters ×200

* Residue conservation analysis

PDB id:

1nlr

Name:

Endoglucanase

Title:

Endo-1,4-beta-glucanase celb2, cellulase, native structure

Structure:

Endo-1,4-beta-glucanase. Chain: a. Fragment: catalytic domain. Synonym: celb, celb2. Engineered: yes

Source:

Fragment: catalytic domain. Streptomyces lividans. Organism_taxid: 1916. Expressed in: streptomyces lividans. Expression_system_taxid: 1916.

Resolution:

1.75Å R-factor: 0.187 R-free: 0.240

Authors:

G.Sulzenbacher,C.Dupont,G.J.Davies

Key ref:

G.Sulzenbacher et al. (1997). The Streptomyces lividans family 12 endoglucanase: construction of the catalytic cre, expression, and X-ray structure at 1.75 A resolution. Biochemistry, 36, 16032-16039. PubMed id: 9440876 DOI: 10.1021/bi972407v

Date:

27-Oct-97 Release date: 25-Nov-98

Protein chain

Q54331  (Q54331_STRLI) -  Cellulase B (Precursor)

Seq: 381 a.a.

Struc: 222 a.a.*

* PDB and UniProt seqs differ at 1 residue position (black cross)

 Gene Ontology (GO) functional annotation 

• Biological process: polysaccharide catabolic process (1 term)
• Biochemical function: hydrolase activity, hydrolyzing O-glycosyl compounds (2 terms)

DOI no: 10.1021/bi972407v

Biochemistry 36:16032-16039 (1997)

PubMed id: 9440876

The Streptomyces lividans family 12 endoglucanase: construction of the catalytic cre, expression, and X-ray structure at 1.75 A resolution.

G.Sulzenbacher, F.Shareck, R.Morosoli, C.Dupont, G.J.Davies.

ABSTRACT

Cellulases are the glycoside hydrolases responsible for the enzymatic breakdown of the structural plant polymer cellulose. Together with xylanases they counteract the lmitless accumulation of plant biomass in nature and are of considerable fundamental and biotechnological interest. Endoglucanase CelB from Streptomyces lividans performs hydrolysis of the beta-1,4-glycosidic bonds of cellulose, with net retention of anomeric configuration. The enzyme is a member of glycoside hydrolase family 12 [Henrissat, B., and Bairoch, A. (1996) Biochem. J. 316, 695-696], which had previously eluded detailed structural analysis. A truncated, but cataytically competent form of CelB, locking the flexible linker region and cellulose-binding domain, has been constructed and overexpressed in a S. lividans expression system. The three-dimensional X-ray structure of the resulting catalytic domain, CelB2, has been solved by conventional multiple isomorphous replacement methods and refined to an R factor of 0.187 at 1.75 A resolution. The overall fold of the enzyme shows a remarkable similarity to that of family 11 xylanases, as previously predicted by hydrophobic clustering analysis [Törrönen, A., Kubicek, C.P., and Henrissat, B. (1993) FEBS Lett. 321, 135-139]. The 23 kDa protein presents a jelly-roll topology, built up mainly by antiparallel beta-sheets arranged in a sandwich-like manner. A deep substrate-binding cleft runs across the surface, as has been observed in other endoglucanase structures, and is potentially able to accommodate up to five binding subsites. The likely catalytic nucleophile and Brønsted acid/base, residues Glu 120 and Glue 203, respectively, have their carboxylate groups separated by a distance of approximately 7.0 A and are located approximately 15 A from one end of the cleft, implying a -3 to +2 active site.