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Hydroxylase PDB-id
1hqi
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Protein chain
90 a.a. *

* Residue conservation analysis
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PDB id: 1hqi
Name: Hydroxylase
Title: Component p2 from the multicomponent phenol hydroxylase, nmr, 11 structures

Structure:
Phenol hydroxylase p2 protein. Chain: a. Ec: 1.14.13.7

Source:
Pseudomonas sp. Cf600. Organism_taxid: 79676. Strain: cf600

UniProt:
P19731 (DMPM_PSEUF) Pfam  
Seq: 90 a.a.
Struc: 90 a.a.
Key:    PfamA domain
 Secondary structure  CATH domain

Enzyme class:
E.C.1.14.13.7   [IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

Reaction:
Phenol + NADPH + O2 = catechol + NADP+ + H2O (see diagram below)

Cofactor:
FAD

Resolution:
not givenÅ

NMR structure:
12 models

Authors:
H.Qian,I.Sethon

Key ref:
H.Qian et al. (1997). Solution structure of phenol hydroxylase protein component P2 determined by NMR spectroscopy.. Biochemistry, 36, 495-504. [PubMed id: 9012665] [DOI: 10.1021/bi9619233]

Date:
19-Sep-96

Release date:
23-Dec-96
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Enzyme reaction for E.C.1.14.13.7


Phenol
+
NADPH
+
O(2)
=
catechol
+
NADP(+)
+ H(2)O
Cofactor


FAD
Molecule diagrams generated from .mol files obtained from the KEGG ftp site.

 
    Key reference    
 
 
DOI no: 10.1021/bi9619233 Biochemistry 36:495-504 (1997)
PubMed id: 9012665  
 
 
Solution structure of phenol hydroxylase protein component P2 determined by NMR spectroscopy.
H.Qian, U.Edlund, J.Powlowski, V.Shingler, I.Sethson.
 
  ABSTRACT  
 
Phenol hydroxylase from Pseudomonas sp. CF600 is a member of a family of binuclear iron-center-containing multicomponent oxygenases, which catalyzes the conversion of phenol and some of its methyl-substituted derivatives to catechol. In addition to a reductase component which transfers electrons from NADH, optimal turnover of the hydroxylase requires P2, a protein containing 90 amino acids which is readily resolved from the other components. The three-dimensional solution structure of P2 has been solved by 3D heteronuclear NMR spectroscopy. On the basis of 1206 experimental constraints, including 1060 distance constraints obtained from NOEs, 70 phi dihedral angle constraints, 42 psi dihedral angle constraints, and 34 hydrogen bond constraints, a total of 12 converged structures were obtained. The atomic root mean square deviation for the 12 converged structure with respect to the mean coordinates is 2.48 A for the backbone atoms and 3.85 A for all the heavy atoms. This relatively large uncertainty can be ascribed to conformational flexibility and exchange. The molecular structure of P2 is composed of three helices, six antiparallel beta-strands, one beta-hairpin, and some less ordered regions. This is the first structure among the known multicomponent oxygenases. On the basis of the three-dimensional structure of P2, sequence comparisons with similar proteins from other multicomponent oxygenases suggested that all of these proteins may have a conserved structure in the core regions.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
16402171 V.Champreda, Y.J.Choi, N.Y.Zhou, and D.J.Leak (2006).
Alteration of the stereo- and regioselectivity of alkene monooxygenase based on coupling protein interactions.
  Appl Microbiol Biotechnol, 71, 840-847.  
12595730 A.M.Orville, J.M.Studts, G.T.Lountos, K.H.Mitchell, and B.G.Fox (2003).
Crystallization and preliminary analysis of native and N-terminal truncated isoforms of toluene-4-monooxygenase catalytic effector protein.
  Acta Crystallogr D Biol Crystallogr, 59, 572-575.  
12653998 E.Griva, E.Pessione, S.Divari, F.Valetti, M.Cavaletto, G.L.Rossi, and C.Giunta (2003).
Phenol hydroxylase from Acinetobacter radioresistens S13. Isolation and characterization of the regulatory component.
  Eur J Biochem, 270, 1434-1440.  
14550940 J.G.Leahy, P.J.Batchelor, and S.M.Morcomb (2003).
Evolution of the soluble diiron monooxygenases.
  FEMS Microbiol Rev, 27, 449-479.  
12752444 S.Divari, F.Valetti, P.Caposio, E.Pessione, M.Cavaletto, E.Griva, G.Gribaudo, G.Gilardi, and C.Giunta (2003).
The oxygenase component of phenol hydroxylase from Acinetobacter radioresistens S13.
  Eur J Biochem, 270, 2244-2253.  
12186554 E.Cadieux, V.Vrajmasu, C.Achim, J.Powlowski, and E.Münck (2002).
Biochemical, Mössbauer, and EPR studies of the diiron cluster of phenol hydroxylase from Pseudomonas sp. strain CF 600.
  Biochemistry, 41, 10680-10691.  
11863457 K.H.Mitchell, J.M.Studts, and B.G.Fox (2002).
Combined participation of hydroxylase active site residues and effector protein binding in a para to ortho modulation of toluene 4-monooxygenase regiospecificity.
  Biochemistry, 41, 3176-3188.  
11329291 B.J.Wallar, and J.D.Lipscomb (2001).
Methane monooxygenase component B mutants alter the kinetics of steps throughout the catalytic cycle.
  Biochemistry, 40, 2220-2233.  
11729263 E.Díaz, A.Ferrández, M.A.Prieto, and J.L.García (2001).
Biodegradation of aromatic compounds by Escherichia coli.
  Microbiol Mol Biol Rev, 65, 523.  
11297417 H.Hemmi, J.M.Studts, Y.K.Chae, J.Song, J.L.Markley, and B.G.Fox (2001).
Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
  Biochemistry, 40, 3512-3524.
PDB codes: 1g10 1g11
11571188 H.Y.Kahng, J.C.Malinverni, M.M.Majko, and J.J.Kukor (2001).
Genetic and functional analysis of the tbc operons for catabolism of alkyl- and chloroaromatic compounds in Burkholderia sp. strain JS150.
  Appl Environ Microbiol, 67, 4805-4816.  
11500872 M.Merkx, D.A.Kopp, M.H.Sazinsky, J.L.Blazyk, J.Müller, and S.J.Lippard (2001).
Dioxygen Activation and Methane Hydroxylation by Soluble Methane Monooxygenase: A Tale of Two Irons and Three Proteins A list of abbreviations can be found in Section 7.
  Angew Chem Int Ed Engl, 40, 2782-2807.  
10759840 D.E.Coufal, J.L.Blazyk, D.A.Whittington, W.W.Wu, A.C.Rosenzweig, and S.J.Lippard (2000).
Sequencing and analysis of the Mmethylococcus capsulatus (Bath) solublemethane monooxygenase genes.
  Eur J Biochem, 267, 2174-2185.  
10788394 Z.I.Finkelstein, B.P.Baskunov, M.G.Boersma, J.Vervoort, E.L.Golovlev, W.J.van Berkel, L.A.Golovleva, and I.M.Rietjens (2000).
Identification of fluoropyrogallols as new intermediates in biotransformation of monofluorophenols in Rhodococcus opacus 1cp.
  Appl Environ Microbiol, 66, 2148-2153.  
10504385 E.Pessione, S.Divari, E.Griva, M.Cavaletto, G.L.Rossi, G.Gilardi, and C.Giunta (1999).
Phenol hydroxylase from Acinetobacter radioresistens is a multicomponent enzyme. Purification and characterization of the reductase moiety.
  Eur J Biochem, 265, 549-555.  
10393915 K.J.Walters, G.T.Gassner, S.J.Lippard, and G.Wagner (1999).
Structure of the soluble methane monooxygenase regulatory protein B.
  Proc Natl Acad Sci U S A, 96, 7877-7882.
PDB code: 1ckv
  10103255 N.Y.Zhou, A.Jenkins, C.K.Chan Kwo Chion, and D.J.Leak (1999).
The alkene monooxygenase from Xanthobacter strain Py2 is closely related to aromatic monooxygenases and catalyzes aromatic monohydroxylation of benzene, toluene, and phenol.
  Appl Environ Microbiol, 65, 1589-1595.  
10346895 S.C.Gallagher, A.J.Callaghan, J.Zhao, H.Dalton, and J.Trewhella (1999).
Global conformational changes control the reactivity of methane monooxygenase.
  Biochemistry, 38, 6752-6760.  
10231531 S.L.Chang, B.J.Wallar, J.D.Lipscomb, and K.H.Mayo (1999).
Solution structure of component B from methane monooxygenase derived through heteronuclear NMR and molecular modeling.
  Biochemistry, 38, 5799-5812.
PDB code: 2mob
10564791 V.S.Bondar, M.G.Boersma, W.J.van Berkel, Z.I.Finkelstein, E.L.Golovlev, B.P.Baskunov, J.Vervoort, L.A.Golovleva, and I.M.Rietjens (1999).
Preferential oxidative dehalogenation upon conversion of 2-halophenols by Rhodococcus opacus 1G.
  FEMS Microbiol Lett, 181, 73-82.  
9748275 A.Ferrández, B.Miñambres, B.García, E.R.Olivera, J.M.Luengo, J.L.García, and E.Díaz (1998).
Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway.
  J Biol Chem, 273, 25974-25986.  
  9758777 G.Bertoni, M.Martino, E.Galli, and P.Barbieri (1998).
Analysis of the gene cluster encoding toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1.
  Appl Environ Microbiol, 64, 3626-3632.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.