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PDBsum
PDBsum provides an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them. Text and sequence searches
Scans all TITLE, HEADER, COMPND, SOURCE and AUTHOR records
in the PDB (eg to find a given protein by name).
Perform FASTA search vs
all sequences in the PDB to get a list of the closest matches.
Notes
The development of PDBsum has been partly funded by the
Wellcome Trust
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Contents
PDBsum contains
82,036 entries, including 1,673 superseded Last update: 4 February, 2012 Related databases
Enzyme 3D structures organized by the E.C. numbering hierarchy.
Structures of drugs and their target proteins in the
PDB.
Searches sequence against all PDB sequences and structurally
annotates alignment.
Prediction of protein function from 3D structure.
Graphs of protein sequences having related Pfam domain architectures.
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