Validation
Percentiles
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PDB entry quality indicators
  • This image shows how key quality metrics of this entry compare with all other entries in the PDB archive and entries that are comparable in resolution.
  • For more details, check the wwPDB validation report for this entry.
Biological Assemblies
HomoDodecameric Assembly
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HomoDodecameric Assembly
  • This assembly is defined by the author and software (PQS). (Details of 2 more possible assemblies)
  • This assembly consists of 12 molecules (1 type):
    • 12 copies of heat shock protein hslv
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Deposited Structure
Cartoon
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Cartoon coloured by chain
  • Chains A (green), B (blue), C (yellow), D (red) each contain "heat shock protein hslv"
  • Chains E (magenta), F (cyan) each contain "heat shock protein hslu"
  • There are 2 types of non-polymeric entities, namely:
    • phosphoaminophosphonic acid-adenylate ester
    • water
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Deposited Structure
Surface
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Surface coloured by atomic properties
  • Default element colours are as defined by PyMOL e.g. carbon, nitrogen, oxygen, sulphur, phosphorus, selenium.
  • Positively and negatively-charged atoms of standard residues in proteins and polynucleotides are blue and red respectively.
  • Similarly, electro-positive and electro-negative polar atoms are skyblue and salmon respectively.
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Domains
SCOP
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SCOP domains
  • 4 copies of domain d.153.1.4 (Proteasome subunits) are shown in red .
  • 2 copies of domain c.37.1.20 (Extended AAA-ATPase domain) are shown in green .
  • Search for PDB entries with similar 3D structure.
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Domains
CATH
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CATH domains
  • 2 copies of domain 1.10.8.10 (DNA helicase RuvA subunit, C-terminal domain) are shown in blue (Explore all PDB entries with this CATH domain).
  • 4 copies of domain 3.60.20.10 (Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1) are shown in yellow (Explore all PDB entries with this CATH domain).
  • 2 copies of domain 3.40.50.300 (P-loop containing nucleotide triphosphate hydrolases) are shown in magenta (Explore all PDB entries with this CATH domain).
  • 2 copies of domain 1.10.8.60 (-unnamed-domain-) are shown in cyan (Explore all PDB entries with this CATH domain).
  • Search for PDB entries with similar 3D structure.
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Domains
Pfam
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Pfam domains
  • 2 copies of domain PF00004 (ATPase family associated with various cellular activities (AAA)) in tv_green (Explore all PDB entries with this Pfam domain).
  • 2 copies of domain PF10431 (C-terminal, D2-small domain, of ClpB protein) in tv_yellow (Explore all PDB entries with this Pfam domain).
  • 4 copies of domain PF00227 (Proteasome subunit) in tv_red (Explore all PDB entries with this Pfam domain).
  • 2 copies of domain PF07724 (AAA domain (Cdc48 subfamily)) in tv_blue (Explore all PDB entries with this Pfam domain).
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Ligands
ANP
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Ligand environment
  • Chain E, residue number 500, type ANP
  • More information about ANP.
  • Details of the binding sites of all ligands in this entry.
  • Name: phosphoaminophosphonic acid-adenylate ester
  • Name: [[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]amino]phosphonic acid
  • Note: There is 1 more occurrence of ANP in this entry.
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Experimental
Crystallographic
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B-factors and symmetry contacts
  • This image shows the backbone of the macromolecules.
  • The thickness reflects the B-values (thin = low, thick = high).
  • The colour varies from blue to red corresponding to a B-factor range of 10 to 100 Å2.
  • The red surface patches indicate regions where symmetry-related crystal contacts occur (5Å cut-off).
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