data_TAR
#
_chem_comp.id TAR
_chem_comp.name "D(-)-TARTARIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H6 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 150.087
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TAR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CCW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TAR O1 O1 O 0 1 N N N N N N 4.083 39.403 79.789 2.582 -0.757 -0.359 O1 TAR 1
TAR O11 O11 O 0 1 N N N N N N 5.209 38.603 78.063 2.410 1.226 0.600 O11 TAR 2
TAR C1 C1 C 0 1 N N N N N N 4.219 38.587 78.853 1.900 0.208 -0.111 C1 TAR 3
TAR C2 C2 C 0 1 N N S N N N 3.189 37.481 78.601 0.475 0.270 -0.599 C2 TAR 4
TAR O2 O2 O 0 1 N N N N N N 2.250 37.350 79.663 0.204 -0.866 -1.423 O2 TAR 5
TAR C3 C3 C 0 1 N N S N N N 2.434 37.785 77.291 -0.475 0.270 0.599 C3 TAR 6
TAR O3 O3 O 0 1 N N N N N N 1.351 38.680 77.496 -0.204 -0.866 1.422 O3 TAR 7
TAR C4 C4 C 0 1 N N N N N N 1.916 36.422 76.778 -1.900 0.208 0.111 C4 TAR 8
TAR O4 O4 O 0 1 N N N N N N 0.731 36.162 76.884 -2.582 -0.758 0.359 O4 TAR 9
TAR O41 O41 O 0 1 N N N N N N 2.854 35.696 76.304 -2.410 1.226 -0.600 O41 TAR 10
TAR HO1 HO1 H 0 1 N N N N N N 5.795 39.312 78.303 3.328 1.141 0.891 HO1 TAR 11
TAR H2 H2 H 0 1 N N N N N N 3.737 36.530 78.531 0.329 1.182 -1.179 H2 TAR 12
TAR HO2 HO2 H 0 1 N N N N N N 2.400 38.034 80.305 0.314 -1.714 -0.971 HO2 TAR 13
TAR H3 H3 H 0 1 N N N N N N 3.100 38.276 76.566 -0.329 1.182 1.179 H3 TAR 14
TAR HO3 HO3 H 0 1 N N N N N N 0.530 38.217 77.377 -0.314 -1.714 0.971 HO3 TAR 15
TAR HO4 HO4 H 0 1 N N N N N N 2.497 34.863 76.020 -3.328 1.141 -0.891 HO4 TAR 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TAR O1 C1 DOUB N N 1
TAR O11 C1 SING N N 2
TAR O11 HO1 SING N N 3
TAR C1 C2 SING N N 4
TAR C2 O2 SING N N 5
TAR C2 C3 SING N N 6
TAR C2 H2 SING N N 7
TAR O2 HO2 SING N N 8
TAR C3 O3 SING N N 9
TAR C3 C4 SING N N 10
TAR C3 H3 SING N N 11
TAR O3 HO3 SING N N 12
TAR C4 O4 DOUB N N 13
TAR C4 O41 SING N N 14
TAR O41 HO4 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TAR SMILES ACDLabs 11.02 O=C(O)C(O)C(O)C(=O)O
TAR SMILES_CANONICAL CACTVS 3.352 O[C@@H]([C@H](O)C(O)=O)C(O)=O
TAR SMILES CACTVS 3.352 O[CH]([CH](O)C(O)=O)C(O)=O
TAR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[C@H]([C@@H](C(=O)O)O)(C(=O)O)O"
TAR SMILES "OpenEye OEToolkits" 1.7.0 C(C(C(=O)O)O)(C(=O)O)O
TAR InChI InChI 1.03 InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/t1-,2-/m0/s1
TAR InChIKey InChI 1.03 FEWJPZIEWOKRBE-LWMBPPNESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TAR "SYSTEMATIC NAME" ACDLabs 11.02 "(2S,3S)-2,3-dihydroxybutanedioic acid"
TAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S,3S)-2,3-dihydroxybutanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TAR 'Create component' 1999-07-08 PDBJ
TAR 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id TAR
_pdbe_chem_comp_drugbank_details.drugbank_id DB01694
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'D-tartaric acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 147-71-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
TAR '(-)-Tartaric acid' DrugBank ?
TAR '(−)-(S,S)-tartaric acid' DrugBank ?
TAR '(−)-D-tartaric acid' DrugBank ?
TAR '(2S,3S)-(−)-tartaric acid' DrugBank ?
TAR '(2S,3S)-tartaric acid' DrugBank ?
TAR '(S,S)-(−)-tartaric acid' DrugBank ?
TAR '(S,S)-Tartaric acid' DrugBank ?
TAR 'D-(−)-tartaric acid' DrugBank ?
TAR 'D-tartaric acid' DrugBank ?
TAR 'D-threaric acid' DrugBank ?
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
TAR DB01694 '2,3-diketo-L-gulonate reductase' 'Escherichia coli (strain K12)' P37672 unknown 1
TAR DB01694 'Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1' Humans Q9P2W7 unknown 2
TAR DB01694 'Triggering receptor expressed on myeloid cells 1' Humans Q9NP99 unknown 3
TAR DB01694 'Probable ATP-dependent RNA helicase DDX6' Humans P26196 unknown 4
TAR DB01694 'Cytochrome P450' 'Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)' Q746J6 unknown 5
TAR DB01694 'Hypoxia-inducible factor 1-alpha inhibitor' Humans Q9NWT6 unknown 6
TAR DB01694 'D-3-phosphoglycerate dehydrogenase' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WNX3 unknown 7
TAR DB01694 'Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase' 'Helicobacter pylori (strain ATCC 700392 / 26695)' O25927 unknown 8
TAR DB01694 'V-type proton ATPase subunit C 1' Humans P21283 unknown 9
TAR DB01694 'dTDP-4-dehydrorhamnose 3,5-epimerase' 'Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)' Q9HU21 unknown 10
TAR DB01694 'Uncharacterized protein' 'Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)' Q9KVB4 unknown 11
TAR DB01694 'Phosphonoacetate hydrolase' 'Pseudomonas fluorescens' Q51782 unknown 12
TAR DB01694 'Uncharacterized protein' 'Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)' A0A0H2URW2 unknown 13
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TAR O1 O 3.805 -0.375 1
TAR O11 O 5.104 1.875 2
TAR C1 C 5.104 0.375 3
TAR C2 C 6.404 -0.375 4
TAR O2 O 6.404 -1.875 5
TAR C3 C 7.702 0.375 6
TAR O3 O 7.702 1.875 7
TAR C4 C 9.002 -0.375 8
TAR O4 O 10.301 0.375 9
TAR O41 O 9.002 -1.875 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TAR O1 C1 DOUBLE NONE 1
TAR O11 C1 SINGLE NONE 2
TAR C1 C2 SINGLE NONE 3
TAR C2 O2 SINGLE BEGINDASH 4
TAR C2 C3 SINGLE NONE 5
TAR C3 O3 SINGLE BEGINDASH 6
TAR C3 C4 SINGLE NONE 7
TAR C4 O4 DOUBLE NONE 8
TAR C4 O41 SINGLE NONE 9
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id TAR
_pdbe_chem_comp_rdkit_properties.exactmw 150.016
_pdbe_chem_comp_rdkit_properties.amw 150.086
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 64.111
_pdbe_chem_comp_rdkit_properties.tpsa 115.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.123
_pdbe_chem_comp_rdkit_properties.CrippenMR 27.285
_pdbe_chem_comp_rdkit_properties.chi0v 4.449
_pdbe_chem_comp_rdkit_properties.chi1v 1.975
_pdbe_chem_comp_rdkit_properties.chi2v 0.577
_pdbe_chem_comp_rdkit_properties.chi3v 0.577
_pdbe_chem_comp_rdkit_properties.chi4v 0.185
_pdbe_chem_comp_rdkit_properties.chi0n 10.449
_pdbe_chem_comp_rdkit_properties.chi1n 4.608
_pdbe_chem_comp_rdkit_properties.chi2n 0.577
_pdbe_chem_comp_rdkit_properties.chi3n 0.577
_pdbe_chem_comp_rdkit_properties.chi4n 0.185
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.140
_pdbe_chem_comp_rdkit_properties.kappa1 2.849
_pdbe_chem_comp_rdkit_properties.kappa2 3.136
_pdbe_chem_comp_rdkit_properties.kappa3 1.997
_pdbe_chem_comp_rdkit_properties.Phi 0.894
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TAR UniChem ChEMBL CHEMBL1200861
TAR UniChem DrugBank DB01694
TAR UniChem PDBe TAR
TAR UniChem 'KEGG LIGAND' C02107
TAR UniChem ChEBI 15672
TAR UniChem ZINC ZINC000000895296
TAR UniChem eMolecules 514060
TAR UniChem fdasrs RRX6A4PL3C
TAR UniChem NMRShiftDB 60023401
TAR UniChem ACTor 147-71-7
TAR UniChem Nikkaji J9.264I
TAR UniChem MetaboLights MTBLC15672
TAR UniChem BRENDA 13364
TAR UniChem BRENDA 4878
TAR UniChem BRENDA 7181
TAR UniChem BRENDA 93073
TAR UniChem BRENDA 95667
TAR UniChem BRENDA 96321
TAR UniChem BRENDA 97467
TAR UniChem ChemicalBook CB3693922
TAR UniChem ChemicalBook CB6663151
TAR UniChem DailyMed 'TARTARIC ACID'
TAR UniChem ClinicalTrials 'L-TARTARIC ACID'
TAR UniChem ClinicalTrials 'TARTARIC ACID'
TAR UniChem rxnorm 'TARTARIC ACID'
TAR UniChem rxnorm 'TARTARIC ACID, D-'
TAR UniChem 'Probes And Drugs' PD052150
TAR UniChem 'EPA CompTox Dashboard' DTXSID4043775
TAR UniChem SureChEMBL SCHEMBL116846
TAR UniChem HMDB HMDB0029878
TAR UniChem 'PubChem TPHARMA' 14747877
TAR UniChem 'PubChem TPHARMA' 15934623
TAR UniChem PubChem 439655
TAR UniChem Mcule MCULE-3643444072
TAR UniChem Mcule MCULE-6491788082
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TAR O1 -2.008 0.930 -0.683 ETKDGv3 1
TAR O11 -1.240 1.967 1.216 ETKDGv3 2
TAR C1 -1.364 0.848 0.398 ETKDGv3 3
TAR C2 -0.709 -0.448 0.797 ETKDGv3 4
TAR O2 -1.666 -1.478 0.848 ETKDGv3 5
TAR C3 0.453 -0.820 -0.149 ETKDGv3 6
TAR O3 0.973 -2.070 0.226 ETKDGv3 7
TAR C4 1.542 0.216 -0.095 ETKDGv3 8
TAR O4 2.311 0.279 0.902 ETKDGv3 9
TAR O41 1.680 1.130 -1.135 ETKDGv3 10
TAR HO1 -1.666 2.849 0.958 ETKDGv3 11
TAR H2 -0.300 -0.328 1.825 ETKDGv3 12
TAR HO2 -1.986 -1.641 -0.078 ETKDGv3 13
TAR H3 0.062 -0.881 -1.192 ETKDGv3 14
TAR HO3 1.519 -2.395 -0.537 ETKDGv3 15
TAR HO4 2.398 1.843 -1.109 ETKDGv3 16
#