HEADER LYASE 05-JUN-19 6P78 TITLE QUEUINE LYASE FROM CLOSTRIDIUM SPIROFORME BOUND TO SAM AND QUEUINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RADICAL SAM DOMAIN PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [CLOSTRIDIUM] SPIROFORME DSM 1552; SOURCE 3 ORGANISM_TAXID: 428126; SOURCE 4 GENE: CLOSPI_01524; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS METAL ION BINDING, 4 IRON 4 SULFUR CLUSTER BINDING, RADICAL SAM KEYWDS 2 ENZYME, C-N LYASE ACTIVITY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.ALMO,T.L.GROVE REVDAT 3 18-DEC-19 6P78 1 REMARK REVDAT 2 02-OCT-19 6P78 1 JRNL REVDAT 1 18-SEP-19 6P78 0 JRNL AUTH Y.YUAN,R.ZALLOT,T.L.GROVE,D.J.PAYAN,I.MARTIN-VERSTRAETE, JRNL AUTH 2 S.SEPIC,S.BALAMKUNDU,R.NEELAKANDAN,V.K.GADI,C.F.LIU, JRNL AUTH 3 M.A.SWAIRJO,P.C.DEDON,S.C.ALMO,J.A.GERLT,V.DE CRECY-LAGARD JRNL TITL DISCOVERY OF NOVEL BACTERIAL QUEUINE SALVAGE ENZYMES AND JRNL TITL 2 PATHWAYS IN HUMAN PATHOGENS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 19126 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31481610 JRNL DOI 10.1073/PNAS.1909604116 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8070 - 4.1567 1.00 2026 156 0.1533 0.1642 REMARK 3 2 4.1567 - 3.3008 1.00 1915 148 0.1486 0.1906 REMARK 3 3 3.3008 - 2.8840 1.00 1867 144 0.1671 0.2101 REMARK 3 4 2.8840 - 2.6205 1.00 1850 144 0.1747 0.2022 REMARK 3 5 2.6205 - 2.4328 1.00 1854 143 0.1764 0.2068 REMARK 3 6 2.4328 - 2.2894 1.00 1847 142 0.1710 0.2507 REMARK 3 7 2.2894 - 2.1748 1.00 1842 143 0.1660 0.2319 REMARK 3 8 2.1748 - 2.0802 1.00 1812 141 0.1731 0.2030 REMARK 3 9 2.0802 - 2.0001 1.00 1818 140 0.1768 0.2122 REMARK 3 10 2.0001 - 1.9311 1.00 1805 139 0.1722 0.2080 REMARK 3 11 1.9311 - 1.8707 1.00 1812 140 0.1757 0.2122 REMARK 3 12 1.8707 - 1.8173 1.00 1808 140 0.1844 0.2191 REMARK 3 13 1.8173 - 1.7694 1.00 1797 138 0.2138 0.2511 REMARK 3 14 1.7694 - 1.7263 1.00 1827 142 0.2174 0.2449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6518 34.0889 80.2887 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.1760 REMARK 3 T33: 0.1794 T12: -0.0386 REMARK 3 T13: -0.0125 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.5477 L22: 6.9295 REMARK 3 L33: 7.3811 L12: -1.8179 REMARK 3 L13: -0.5805 L23: -0.1192 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: -0.0462 S13: -0.2539 REMARK 3 S21: 0.4354 S22: -0.1197 S23: 0.2856 REMARK 3 S31: 0.1966 S32: -0.6270 S33: 0.2254 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2724 51.4466 69.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.3595 T22: 0.1837 REMARK 3 T33: 0.1848 T12: 0.0488 REMARK 3 T13: -0.0262 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.3263 L22: 2.7104 REMARK 3 L33: 5.0695 L12: -0.5962 REMARK 3 L13: 0.8028 L23: -0.4862 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.0369 S13: 0.2093 REMARK 3 S21: 0.1752 S22: 0.0388 S23: -0.0229 REMARK 3 S31: -0.8041 S32: -0.3201 S33: 0.0162 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0579 50.3263 83.3527 REMARK 3 T TENSOR REMARK 3 T11: 0.7485 T22: 0.3188 REMARK 3 T33: 0.2585 T12: 0.0469 REMARK 3 T13: -0.0072 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.5810 L22: 7.5070 REMARK 3 L33: 0.3107 L12: -0.1284 REMARK 3 L13: -0.0549 L23: 1.2483 REMARK 3 S TENSOR REMARK 3 S11: -0.4359 S12: -0.4868 S13: 0.2331 REMARK 3 S21: 0.8137 S22: 0.3280 S23: 0.0057 REMARK 3 S31: -1.6421 S32: -0.6042 S33: 0.2086 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6597 41.3875 78.3621 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.1336 REMARK 3 T33: 0.1296 T12: -0.0154 REMARK 3 T13: -0.0263 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.9644 L22: 4.6050 REMARK 3 L33: 3.3191 L12: -0.6445 REMARK 3 L13: 0.6259 L23: -0.3465 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.2360 S13: 0.1210 REMARK 3 S21: 0.0547 S22: -0.0286 S23: -0.0852 REMARK 3 S31: -0.4181 S32: 0.0025 S33: 0.0281 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6190 46.1988 84.1366 REMARK 3 T TENSOR REMARK 3 T11: 0.5940 T22: 0.3301 REMARK 3 T33: 0.3747 T12: -0.1501 REMARK 3 T13: -0.1891 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 6.3384 L22: 6.4299 REMARK 3 L33: 0.5247 L12: -2.4002 REMARK 3 L13: -1.6700 L23: 1.2307 REMARK 3 S TENSOR REMARK 3 S11: -0.2277 S12: -0.4162 S13: 0.7738 REMARK 3 S21: 0.4569 S22: 0.1475 S23: -0.8850 REMARK 3 S31: -0.9266 S32: 0.8407 S33: 0.0077 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0257 38.0163 75.7565 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.1392 REMARK 3 T33: 0.1777 T12: -0.0514 REMARK 3 T13: -0.0292 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.6417 L22: 3.7993 REMARK 3 L33: 6.3027 L12: 0.0637 REMARK 3 L13: 0.7062 L23: -0.5855 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: -0.2371 S13: -0.2160 REMARK 3 S21: 0.2174 S22: -0.0411 S23: -0.0100 REMARK 3 S31: 0.0174 S32: 0.1250 S33: -0.0888 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0120 47.5288 67.7266 REMARK 3 T TENSOR REMARK 3 T11: 0.2816 T22: 0.1708 REMARK 3 T33: 0.2095 T12: -0.0767 REMARK 3 T13: -0.0456 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 5.6477 L22: 4.5646 REMARK 3 L33: 7.2769 L12: -2.2913 REMARK 3 L13: 3.8134 L23: -3.5288 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: 0.2292 S13: 0.2075 REMARK 3 S21: 0.0760 S22: -0.2351 S23: -0.3666 REMARK 3 S31: -0.4191 S32: 0.6956 S33: 0.3909 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4781 43.0389 58.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.0661 REMARK 3 T33: 0.1711 T12: -0.0210 REMARK 3 T13: -0.0079 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 5.1634 L22: 2.1630 REMARK 3 L33: 3.7832 L12: -1.7015 REMARK 3 L13: 2.3775 L23: -1.3320 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: 0.2466 S13: 0.0440 REMARK 3 S21: -0.2341 S22: -0.1343 S23: -0.0761 REMARK 3 S31: 0.0286 S32: 0.0751 S33: 0.0140 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9952 35.1549 56.2183 REMARK 3 T TENSOR REMARK 3 T11: 0.2489 T22: 0.0804 REMARK 3 T33: 0.1704 T12: -0.0182 REMARK 3 T13: -0.0162 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 7.4164 L22: 0.8486 REMARK 3 L33: 2.9101 L12: -0.5473 REMARK 3 L13: 1.2577 L23: -0.4053 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.2500 S13: -0.0978 REMARK 3 S21: 0.0052 S22: 0.0331 S23: 0.0106 REMARK 3 S31: 0.1587 S32: -0.0574 S33: 0.0409 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2041 31.9849 64.6332 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.1920 REMARK 3 T33: 0.2195 T12: -0.0557 REMARK 3 T13: -0.0138 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 4.7473 L22: 1.6470 REMARK 3 L33: 3.2232 L12: -1.5117 REMARK 3 L13: -0.2866 L23: -0.0545 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: -0.4017 S13: -0.2261 REMARK 3 S21: 0.1950 S22: 0.1104 S23: 0.0738 REMARK 3 S31: 0.3401 S32: -0.3619 S33: -0.0521 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 53.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 27.40 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.60 REMARK 200 R MERGE FOR SHELL (I) : 1.63800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL 1.14-3260 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES, PH 9.5, 30% POLYETHYLENE REMARK 280 GLYCOL 3,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.20700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.80300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.80300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.31050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.80300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.80300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.10350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.80300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.80300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.31050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.80300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.80300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.10350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.20700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -122.49 61.09 REMARK 500 TRP A 25 -68.58 -92.13 REMARK 500 ASN A 66 31.70 -160.83 REMARK 500 LYS A 113 -38.38 69.46 REMARK 500 GLU A 123 -53.35 67.93 REMARK 500 ASN A 189 -151.16 -144.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 SF4 A 501 S2 125.1 REMARK 620 3 SF4 A 501 S3 115.2 107.3 REMARK 620 4 SF4 A 501 S4 97.1 102.9 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 SF4 A 501 S1 108.9 REMARK 620 3 SF4 A 501 S2 115.7 108.7 REMARK 620 4 SF4 A 501 S4 113.2 105.9 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 SF4 A 501 S1 108.4 REMARK 620 3 SF4 A 501 S2 106.1 109.1 REMARK 620 4 SF4 A 501 S3 123.9 102.3 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 503 OXT REMARK 620 2 SF4 A 501 S1 92.9 REMARK 620 3 SF4 A 501 S3 155.8 100.4 REMARK 620 4 SF4 A 501 S4 90.7 105.0 105.0 REMARK 620 5 SAM A 503 N 68.4 152.6 91.5 95.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QUG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 503 DBREF 6P78 A 1 229 UNP B1C2R2 B1C2R2_9FIRM 1 229 SEQADV 6P78 MET A -21 UNP B1C2R2 INITIATING METHIONINE SEQADV 6P78 HIS A -20 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 HIS A -19 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 HIS A -18 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 HIS A -17 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 HIS A -16 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 HIS A -15 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 SER A -14 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 SER A -13 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 GLY A -12 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 VAL A -11 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 ASP A -10 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 LEU A -9 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 GLY A -8 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 THR A -7 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 GLU A -6 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 ASN A -5 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 LEU A -4 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 TYR A -3 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 PHE A -2 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 GLN A -1 UNP B1C2R2 EXPRESSION TAG SEQADV 6P78 SER A 0 UNP B1C2R2 EXPRESSION TAG SEQRES 1 A 251 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 251 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU ARG TYR SEQRES 3 A 251 SER HIS ILE LEU GLU LYS ASP LYS ARG GLU ILE VAL LEU SEQRES 4 A 251 LEU LYS SER ARG PRO CYS ILE TRP GLY LYS CYS SER PHE SEQRES 5 A 251 CYS ASP TYR ILE GLU ASP ASN ASP VAL ASP GLN LYS GLU SEQRES 6 A 251 ASN GLN LYS ILE ASN ASP GLU VAL LEU ASN LYS ILE THR SEQRES 7 A 251 GLY GLN TYR GLY VAL LEU GLU VAL ILE ASN SER GLY SER SEQRES 8 A 251 PHE PHE GLU LEU PRO ASP GLU THR ILE GLU ARG ILE TYR SEQRES 9 A 251 LYS ILE ILE GLY GLU LYS LYS ILE LYS ARG LEU TYR ILE SEQRES 10 A 251 GLU ALA HIS TYR LEU TYR LYS LYS LYS ILE LYS ALA LEU SEQRES 11 A 251 ARG GLU LYS PHE LYS ILE GLU ILE ILE VAL LYS THR GLY SEQRES 12 A 251 ILE GLU THR PHE ASN ASP GLU MET ARG ASN ASN VAL LEU SEQRES 13 A 251 ASN LYS ASN ILE HIS PHE ASP LYS ILE GLU GLU ILE LEU SEQRES 14 A 251 GLU ASP PHE ASP SER PRO SMC LEU MET VAL GLY ILE GLN SEQRES 15 A 251 GLY GLN THR LYS GLU MET ILE ARG LYS ASP ILE GLU ILE SEQRES 16 A 251 LEU THR LYS TYR PHE ASP HIS GLY THR ILE ASN ILE TYR SEQRES 17 A 251 ARG ASN ASN SER THR PRO ILE LYS ARG ASP GLU GLU LEU SEQRES 18 A 251 ILE LYS TRP PHE ASP GLU GLU TYR HIS ASP LEU LYS ASN SEQRES 19 A 251 ASN ARG LYS TYR ASP TYR LEU GLY ILE PRO THR ASP PHE SEQRES 20 A 251 GLY VAL GLY ASP MODRES 6P78 SMC A 154 CYS MODIFIED RESIDUE HET SMC A 154 7 HET SF4 A 501 8 HET QUG A 502 20 HET SAM A 503 27 HETNAM SMC S-METHYLCYSTEINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM QUG 2-AMINO-5-({[(1S,4S,5S)-4,5-DIHYDROXYCYCLOPENT-2-EN-1- HETNAM 2 QUG YL]AMINO}METHYL)-1,7-DIHYDRO-4H-PYRROLO[2,3- HETNAM 3 QUG D]PYRIMIDIN-4-ONE HETNAM SAM S-ADENOSYLMETHIONINE HETSYN QUG QUEUINE FORMUL 1 SMC C4 H9 N O2 S FORMUL 2 SF4 FE4 S4 FORMUL 3 QUG C12 H15 N5 O3 FORMUL 4 SAM C15 H22 N6 O5 S FORMUL 5 HOH *221(H2 O) HELIX 1 AA1 ASP A 32 ASN A 37 5 6 HELIX 2 AA2 ASP A 40 ASN A 53 1 14 HELIX 3 AA3 SER A 69 LEU A 73 5 5 HELIX 4 AA4 PRO A 74 LYS A 88 1 15 HELIX 5 AA5 HIS A 98 LYS A 103 5 6 HELIX 6 AA6 LYS A 104 LYS A 113 1 10 HELIX 7 AA7 ASN A 126 VAL A 133 1 8 HELIX 8 AA8 LYS A 142 GLU A 148 1 7 HELIX 9 AA9 THR A 163 PHE A 178 1 16 HELIX 10 AB1 ASP A 196 TYR A 207 1 12 HELIX 11 AB2 TYR A 207 ASN A 212 1 6 HELIX 12 AB3 ILE A 221 GLY A 226 5 6 SHEET 1 AA1 8 TYR A 4 ILE A 7 0 SHEET 2 AA1 8 ARG A 13 LEU A 17 -1 O ARG A 13 N ILE A 7 SHEET 3 AA1 8 VAL A 61 ILE A 65 1 O ILE A 65 N VAL A 16 SHEET 4 AA1 8 ARG A 92 GLU A 96 1 O TYR A 94 N VAL A 64 SHEET 5 AA1 8 GLU A 115 GLU A 123 1 O LYS A 119 N ILE A 95 SHEET 6 AA1 8 SER A 152 VAL A 157 1 O SMC A 154 N GLU A 123 SHEET 7 AA1 8 GLY A 181 ILE A 185 1 O THR A 182 N LEU A 155 SHEET 8 AA1 8 TYR A 216 LEU A 219 1 O LEU A 219 N ILE A 183 LINK SG CYS A 23 FE1 SF4 A 501 1555 1555 2.41 LINK SG CYS A 28 FE3 SF4 A 501 1555 1555 2.30 LINK SG CYS A 31 FE4 SF4 A 501 1555 1555 2.38 LINK C PRO A 153 N SMC A 154 1555 1555 1.33 LINK C SMC A 154 N LEU A 155 1555 1555 1.33 LINK FE2 SF4 A 501 OXT SAM A 503 1555 1555 2.46 LINK FE2 SF4 A 501 N SAM A 503 1555 1555 2.42 SITE 1 AC1 8 CYS A 23 GLY A 26 CYS A 28 CYS A 31 SITE 2 AC1 8 GLY A 68 HIS A 98 LYS A 136 SAM A 503 SITE 1 AC2 15 TYR A 33 ASP A 36 ILE A 65 SER A 67 SITE 2 AC2 15 GLU A 96 LYS A 119 ASN A 184 PRO A 222 SITE 3 AC2 15 GLY A 228 ASP A 229 SAM A 503 HOH A 636 SITE 4 AC2 15 HOH A 658 HOH A 685 HOH A 705 SITE 1 AC3 20 PHE A 30 TYR A 33 GLY A 68 GLU A 96 SITE 2 AC3 20 HIS A 98 GLY A 121 GLU A 123 LYS A 136 SITE 3 AC3 20 SMC A 154 MET A 156 ASN A 184 ILE A 185 SITE 4 AC3 20 TYR A 186 ARG A 187 ASN A 189 SF4 A 501 SITE 5 AC3 20 QUG A 502 HOH A 649 HOH A 709 HOH A 718 CRYST1 57.606 57.606 152.414 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017359 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017359 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006561 0.00000