HEADER HYDROLASE 06-MAR-18 6CMP TITLE CLOSED STRUCTURE OF INACTIVE SHP2 MUTANT C459E COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE COMPND 5 PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP2,SH-PTP3; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROTEIN TYROSINE PHOSPHATASE, SRC HOMOLOGY DOMAIN 2, INACTIVE STATE, KEYWDS 2 INACTIVE MUTANT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.P.PADUA,Y.SUN,I.MARKO,W.PITSAWONG,D.KERN REVDAT 6 04-OCT-23 6CMP 1 REMARK REVDAT 5 08-JAN-20 6CMP 1 REMARK REVDAT 4 20-NOV-19 6CMP 1 REMARK REVDAT 3 17-APR-19 6CMP 1 REMARK REVDAT 2 20-FEB-19 6CMP 1 REMARK REVDAT 1 14-NOV-18 6CMP 0 JRNL AUTH R.A.P.PADUA,Y.SUN,I.MARKO,W.PITSAWONG,J.B.STILLER,R.OTTEN, JRNL AUTH 2 D.KERN JRNL TITL MECHANISM OF ACTIVATING MUTATIONS AND ALLOSTERIC DRUG JRNL TITL 2 INHIBITION OF THE PHOSPHATASE SHP2. JRNL REF NAT COMMUN V. 9 4507 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30375376 JRNL DOI 10.1038/S41467-018-06814-W REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 91347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.0000 - 4.3400 1.00 6796 153 0.1849 0.1784 REMARK 3 2 4.3400 - 3.4500 1.00 6551 146 0.1573 0.1875 REMARK 3 3 3.4500 - 3.0100 1.00 6462 145 0.1815 0.2122 REMARK 3 4 3.0100 - 2.7400 1.00 6439 144 0.1992 0.2518 REMARK 3 5 2.7400 - 2.5400 1.00 6479 144 0.1931 0.2275 REMARK 3 6 2.5400 - 2.3900 1.00 6377 143 0.1865 0.2290 REMARK 3 7 2.3900 - 2.2700 1.00 6401 142 0.1982 0.2615 REMARK 3 8 2.2700 - 2.1700 1.00 6378 143 0.2061 0.2491 REMARK 3 9 2.1700 - 2.0900 1.00 6395 143 0.2206 0.2550 REMARK 3 10 2.0900 - 2.0200 1.00 6340 141 0.2372 0.2763 REMARK 3 11 2.0200 - 1.9500 1.00 6345 142 0.2670 0.2925 REMARK 3 12 1.9500 - 1.9000 0.99 6310 141 0.3049 0.3553 REMARK 3 13 1.9000 - 1.8500 0.98 6203 139 0.3621 0.3819 REMARK 3 14 1.8500 - 1.8000 0.93 5875 130 0.4011 0.4545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.298 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8061 REMARK 3 ANGLE : 0.618 10920 REMARK 3 CHIRALITY : 0.047 1188 REMARK 3 PLANARITY : 0.003 1431 REMARK 3 DIHEDRAL : 11.331 4803 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 84.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.15990 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DGP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LITHIUM NITRATE, 20% PEG 3,350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 ASP A 296 REMARK 465 PRO A 297 REMARK 465 ASN A 298 REMARK 465 GLU A 299 REMARK 465 PRO A 300 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 LYS A 324 REMARK 465 GLU A 359 REMARK 465 VAL A 360 REMARK 465 GLU A 361 REMARK 465 ARG A 362 REMARK 465 GLY A 363 REMARK 465 LYS A 364 REMARK 465 SER A 365 REMARK 465 ARG A 528 REMARK 465 ILE A 529 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLY B 93 REMARK 465 ASP B 94 REMARK 465 ASP B 155 REMARK 465 ASP B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 ASN B 161 REMARK 465 ASP B 162 REMARK 465 GLY B 163 REMARK 465 LEU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 THR B 239 REMARK 465 THR B 240 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 VAL B 243 REMARK 465 LYS B 244 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ASN B 319 REMARK 465 ASN B 320 REMARK 465 SER B 321 REMARK 465 LYS B 322 REMARK 465 PRO B 323 REMARK 465 GLU B 359 REMARK 465 VAL B 360 REMARK 465 GLU B 361 REMARK 465 ARG B 362 REMARK 465 GLY B 363 REMARK 465 LYS B 364 REMARK 465 SER B 365 REMARK 465 ARG B 528 REMARK 465 ILE B 529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 HIS A 85 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 87 CG CD OE1 NE2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 SER A 142 OG REMARK 470 HIS A 143 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 ASP A 156 CG OD1 OD2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 SER A 160 OG REMARK 470 ASN A 161 CG OD1 ND2 REMARK 470 ASP A 162 CG OD1 OD2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 LYS A 235 CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 VAL A 301 N CB CG1 CG2 REMARK 470 THR A 316 OG1 CG2 REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 ASN A 410 CG OD1 ND2 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 THR A 524 OG1 CG2 REMARK 470 ARG A 527 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 87 CG CD OE1 NE2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 ASN B 92 CG OD1 ND2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 SER B 140 OG REMARK 470 SER B 142 OG REMARK 470 HIS B 143 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 GLN B 245 CG CD OE1 NE2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LYS B 324 CG CD CE NZ REMARK 470 LYS B 366 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 ARG B 527 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 34 O HOH B 605 1.60 REMARK 500 HH TYR B 327 OD2 ASP B 473 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 216 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 84 57.13 -118.66 REMARK 500 GLN A 245 67.76 -119.37 REMARK 500 TYR A 375 -9.76 81.38 REMARK 500 LYS A 389 140.35 -172.00 REMARK 500 GLU A 459 148.80 178.24 REMARK 500 SER A 460 -122.44 40.77 REMARK 500 ILE A 463 -36.46 -131.97 REMARK 500 VAL A 505 110.16 68.53 REMARK 500 ARG B 4 52.47 -96.87 REMARK 500 TYR B 62 -175.80 -170.12 REMARK 500 GLU B 225 31.70 -94.77 REMARK 500 TYR B 375 -6.86 75.55 REMARK 500 GLU B 459 150.09 174.81 REMARK 500 SER B 460 -124.77 37.44 REMARK 500 ILE B 463 -33.31 -133.95 REMARK 500 VAL B 505 108.12 69.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CMP A 1 529 UNP Q06124 PTN11_HUMAN 1 529 DBREF 6CMP B 1 529 UNP Q06124 PTN11_HUMAN 1 529 SEQADV 6CMP GLY A -2 UNP Q06124 EXPRESSION TAG SEQADV 6CMP SER A -1 UNP Q06124 EXPRESSION TAG SEQADV 6CMP GLY A 0 UNP Q06124 EXPRESSION TAG SEQADV 6CMP GLU A 459 UNP Q06124 CYS 459 ENGINEERED MUTATION SEQADV 6CMP GLY B -2 UNP Q06124 EXPRESSION TAG SEQADV 6CMP SER B -1 UNP Q06124 EXPRESSION TAG SEQADV 6CMP GLY B 0 UNP Q06124 EXPRESSION TAG SEQADV 6CMP GLU B 459 UNP Q06124 CYS 459 ENGINEERED MUTATION SEQRES 1 A 532 GLY SER GLY MET THR SER ARG ARG TRP PHE HIS PRO ASN SEQRES 2 A 532 ILE THR GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG SEQRES 3 A 532 GLY VAL ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER SEQRES 4 A 532 ASN PRO GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY SEQRES 5 A 532 ALA VAL THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR SEQRES 6 A 532 TYR ASP LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA SEQRES 7 A 532 GLU LEU VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU SEQRES 8 A 532 LYS GLU LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO SEQRES 9 A 532 LEU ASN CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS SEQRES 10 A 532 GLY HIS LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR SEQRES 11 A 532 GLU LYS GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER SEQRES 12 A 532 GLN SER HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR SEQRES 13 A 532 GLY ASP ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS SEQRES 14 A 532 VAL THR HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR SEQRES 15 A 532 ASP VAL GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP SEQRES 16 A 532 LEU VAL GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR SEQRES 17 A 532 LEU GLY THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR SEQRES 18 A 532 THR ARG ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG SEQRES 19 A 532 GLU LEU SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS SEQRES 20 A 532 GLN GLY PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN SEQRES 21 A 532 GLU CYS LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG SEQRES 22 A 532 GLN GLU ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU SEQRES 23 A 532 PRO PHE ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP SEQRES 24 A 532 PRO ASN GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE SEQRES 25 A 532 ILE MET PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS SEQRES 26 A 532 PRO LYS LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN SEQRES 27 A 532 ASN THR VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU SEQRES 28 A 532 ASN SER ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU SEQRES 29 A 532 ARG GLY LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU SEQRES 30 A 532 TYR ALA LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN SEQRES 31 A 532 VAL LYS GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU SEQRES 32 A 532 LEU LYS LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG SEQRES 33 A 532 THR VAL TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS SEQRES 34 A 532 GLY VAL PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU SEQRES 35 A 532 GLU GLU VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA SEQRES 36 A 532 GLY PRO VAL VAL VAL HIS GLU SER ALA GLY ILE GLY ARG SEQRES 37 A 532 THR GLY THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE SEQRES 38 A 532 ILE ARG GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO SEQRES 39 A 532 LYS THR ILE GLN MET VAL ARG SER GLN ARG SER GLY MET SEQRES 40 A 532 VAL GLN THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA SEQRES 41 A 532 VAL GLN HIS TYR ILE GLU THR LEU GLN ARG ARG ILE SEQRES 1 B 532 GLY SER GLY MET THR SER ARG ARG TRP PHE HIS PRO ASN SEQRES 2 B 532 ILE THR GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG SEQRES 3 B 532 GLY VAL ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER SEQRES 4 B 532 ASN PRO GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY SEQRES 5 B 532 ALA VAL THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR SEQRES 6 B 532 TYR ASP LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA SEQRES 7 B 532 GLU LEU VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU SEQRES 8 B 532 LYS GLU LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO SEQRES 9 B 532 LEU ASN CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS SEQRES 10 B 532 GLY HIS LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR SEQRES 11 B 532 GLU LYS GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER SEQRES 12 B 532 GLN SER HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR SEQRES 13 B 532 GLY ASP ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS SEQRES 14 B 532 VAL THR HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR SEQRES 15 B 532 ASP VAL GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP SEQRES 16 B 532 LEU VAL GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR SEQRES 17 B 532 LEU GLY THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR SEQRES 18 B 532 THR ARG ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG SEQRES 19 B 532 GLU LEU SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS SEQRES 20 B 532 GLN GLY PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN SEQRES 21 B 532 GLU CYS LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG SEQRES 22 B 532 GLN GLU ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU SEQRES 23 B 532 PRO PHE ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP SEQRES 24 B 532 PRO ASN GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE SEQRES 25 B 532 ILE MET PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS SEQRES 26 B 532 PRO LYS LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN SEQRES 27 B 532 ASN THR VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU SEQRES 28 B 532 ASN SER ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU SEQRES 29 B 532 ARG GLY LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU SEQRES 30 B 532 TYR ALA LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN SEQRES 31 B 532 VAL LYS GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU SEQRES 32 B 532 LEU LYS LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG SEQRES 33 B 532 THR VAL TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS SEQRES 34 B 532 GLY VAL PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU SEQRES 35 B 532 GLU GLU VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA SEQRES 36 B 532 GLY PRO VAL VAL VAL HIS GLU SER ALA GLY ILE GLY ARG SEQRES 37 B 532 THR GLY THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE SEQRES 38 B 532 ILE ARG GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO SEQRES 39 B 532 LYS THR ILE GLN MET VAL ARG SER GLN ARG SER GLY MET SEQRES 40 B 532 VAL GLN THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA SEQRES 41 B 532 VAL GLN HIS TYR ILE GLU THR LEU GLN ARG ARG ILE FORMUL 3 HOH *763(H2 O) HELIX 1 AA1 THR A 12 ARG A 23 1 12 HELIX 2 AA2 THR A 73 HIS A 84 1 12 HELIX 3 AA3 SER A 118 GLY A 130 1 13 HELIX 4 AA4 SER A 189 ASN A 200 1 12 HELIX 5 AA5 GLU A 225 LYS A 235 1 11 HELIX 6 AA6 GLY A 246 GLN A 256 1 11 HELIX 7 AA7 GLN A 257 LEU A 262 5 6 HELIX 8 AA8 ARG A 265 ARG A 270 1 6 HELIX 9 AA9 ARG A 270 ASN A 275 1 6 HELIX 10 AB1 THR A 337 GLU A 348 1 12 HELIX 11 AB2 PRO A 432 SER A 448 1 17 HELIX 12 AB3 ILE A 463 GLY A 483 1 21 HELIX 13 AB4 ASP A 489 SER A 499 1 11 HELIX 14 AB5 THR A 507 ARG A 527 1 21 HELIX 15 AB6 THR B 12 ARG B 23 1 12 HELIX 16 AB7 THR B 73 HIS B 84 1 12 HELIX 17 AB8 SER B 118 GLY B 130 1 13 HELIX 18 AB9 SER B 189 ASN B 200 1 12 HELIX 19 AC1 GLU B 225 LYS B 235 1 11 HELIX 20 AC2 GLY B 246 GLN B 256 1 11 HELIX 21 AC3 GLN B 257 LEU B 262 5 6 HELIX 22 AC4 ARG B 265 ARG B 270 1 6 HELIX 23 AC5 GLN B 271 ASN B 277 5 7 HELIX 24 AC6 THR B 337 GLU B 348 1 12 HELIX 25 AC7 PRO B 432 SER B 448 1 17 HELIX 26 AC8 ILE B 463 GLY B 483 1 21 HELIX 27 AC9 ASP B 489 SER B 499 1 11 HELIX 28 AD1 THR B 507 GLN B 526 1 20 SHEET 1 AA1 6 LYS A 70 PHE A 71 0 SHEET 2 AA1 6 TYR A 63 LEU A 65 -1 N TYR A 63 O PHE A 71 SHEET 3 AA1 6 ALA A 50 ASN A 58 -1 N GLN A 57 O ASP A 64 SHEET 4 AA1 6 PHE A 41 ARG A 47 -1 N VAL A 45 O THR A 52 SHEET 5 AA1 6 SER A 28 PRO A 33 -1 N SER A 28 O ARG A 46 SHEET 6 AA1 6 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 AA2 5 PHE A 113 HIS A 116 0 SHEET 2 AA2 5 SER A 134 GLU A 139 1 O VAL A 137 N HIS A 114 SHEET 3 AA2 5 PHE A 147 THR A 153 -1 O ARG A 152 N SER A 134 SHEET 4 AA2 5 LYS A 166 GLN A 175 -1 O VAL A 170 N LEU A 149 SHEET 5 AA2 5 LYS A 178 ASP A 180 -1 O LYS A 178 N GLN A 175 SHEET 1 AA3 3 PHE A 113 HIS A 116 0 SHEET 2 AA3 3 SER A 134 GLU A 139 1 O VAL A 137 N HIS A 114 SHEET 3 AA3 3 GLN A 214 PRO A 215 1 O GLN A 214 N PHE A 135 SHEET 1 AA4 2 MET A 202 VAL A 203 0 SHEET 2 AA4 2 VAL A 209 LEU A 210 -1 O LEU A 210 N MET A 202 SHEET 1 AA5 2 ILE A 221 ASN A 222 0 SHEET 2 AA5 2 ASP A 487 ILE A 488 -1 O ILE A 488 N ILE A 221 SHEET 1 AA6 9 ARG A 289 VAL A 291 0 SHEET 2 AA6 9 TYR A 304 ILE A 310 -1 O ALA A 307 N VAL A 290 SHEET 3 AA6 9 TYR A 327 THR A 330 -1 O TYR A 327 N ILE A 310 SHEET 4 AA6 9 VAL A 455 HIS A 458 1 O VAL A 457 N ILE A 328 SHEET 5 AA6 9 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 6 AA6 9 GLN A 408 PHE A 420 1 O TYR A 418 N ILE A 353 SHEET 7 AA6 9 TYR A 396 LYS A 405 -1 N LEU A 403 O ARG A 413 SHEET 8 AA6 9 MET A 383 ALA A 392 -1 N ARG A 384 O SER A 404 SHEET 9 AA6 9 LEU A 377 TYR A 380 -1 N TYR A 380 O MET A 383 SHEET 1 AA7 6 LYS B 70 PHE B 71 0 SHEET 2 AA7 6 TYR B 63 LEU B 65 -1 N TYR B 63 O PHE B 71 SHEET 3 AA7 6 ALA B 50 ASN B 58 -1 N GLN B 57 O ASP B 64 SHEET 4 AA7 6 PHE B 41 ARG B 47 -1 N LEU B 43 O ILE B 54 SHEET 5 AA7 6 SER B 28 PRO B 33 -1 N SER B 28 O ARG B 46 SHEET 6 AA7 6 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 AA8 5 PHE B 113 HIS B 116 0 SHEET 2 AA8 5 SER B 134 GLU B 139 1 O GLU B 139 N GLY B 115 SHEET 3 AA8 5 PHE B 147 THR B 153 -1 O ARG B 152 N SER B 134 SHEET 4 AA8 5 LYS B 166 GLN B 175 -1 O VAL B 170 N LEU B 149 SHEET 5 AA8 5 LYS B 178 ASP B 180 -1 O LYS B 178 N GLN B 175 SHEET 1 AA9 3 PHE B 113 HIS B 116 0 SHEET 2 AA9 3 SER B 134 GLU B 139 1 O GLU B 139 N GLY B 115 SHEET 3 AA9 3 GLN B 214 PRO B 215 1 O GLN B 214 N PHE B 135 SHEET 1 AB1 2 MET B 202 VAL B 203 0 SHEET 2 AB1 2 VAL B 209 LEU B 210 -1 O LEU B 210 N MET B 202 SHEET 1 AB2 2 ILE B 221 ASN B 222 0 SHEET 2 AB2 2 ASP B 487 ILE B 488 -1 O ILE B 488 N ILE B 221 SHEET 1 AB3 9 ARG B 289 VAL B 291 0 SHEET 2 AB3 9 TYR B 304 ILE B 310 -1 O ALA B 307 N VAL B 290 SHEET 3 AB3 9 TYR B 327 THR B 330 -1 O TYR B 327 N ILE B 310 SHEET 4 AB3 9 VAL B 455 HIS B 458 1 O VAL B 457 N ILE B 328 SHEET 5 AB3 9 VAL B 352 THR B 356 1 N VAL B 354 O VAL B 456 SHEET 6 AB3 9 GLN B 408 PHE B 420 1 O TYR B 418 N ILE B 353 SHEET 7 AB3 9 TYR B 396 LYS B 405 -1 N THR B 397 O HIS B 419 SHEET 8 AB3 9 MET B 383 ALA B 392 -1 N ARG B 384 O SER B 404 SHEET 9 AB3 9 LEU B 377 TYR B 380 -1 N TYR B 380 O MET B 383 CRYST1 54.750 84.910 211.920 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004719 0.00000