HEADER TRANSFERASE 15-NOV-17 6BMM TITLE STRUCTURE OF HUMAN DHHC20 PALMITOYLTRANSFERASE, SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN DHHC20 PALMITOYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZINC FINGER DHHC DOMAIN-CONTAINING PROTEIN 20,DHHC-20; COMPND 5 EC: 2.3.1.225; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZDHHC20; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS DHHC, LIPID, ACYL, PALMITOYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.RANA,C.-J.LEE,A.BANERJEE REVDAT 3 28-MAR-18 6BMM 1 JRNL REVDAT 2 21-FEB-18 6BMM 1 JRNL REVDAT 1 24-JAN-18 6BMM 0 JRNL AUTH M.S.RANA,P.KUMAR,C.J.LEE,R.VERARDI,K.R.RAJASHANKAR, JRNL AUTH 2 A.BANERJEE JRNL TITL FATTY ACYL RECOGNITION AND TRANSFER BY AN INTEGRAL JRNL TITL 2 MEMBRANES-ACYLTRANSFERASE. JRNL REF SCIENCE V. 359 2018 JRNL REFN ESSN 1095-9203 JRNL PMID 29326245 JRNL DOI 10.1126/SCIENCE.AAO6326 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8522 - 5.6506 0.99 2462 148 0.2215 0.2272 REMARK 3 2 5.6506 - 4.4905 1.00 2386 146 0.2127 0.2512 REMARK 3 3 4.4905 - 3.9245 1.00 2397 143 0.2213 0.2306 REMARK 3 4 3.9245 - 3.5664 1.00 2374 141 0.2330 0.2512 REMARK 3 5 3.5664 - 3.3111 1.00 2382 138 0.2358 0.2610 REMARK 3 6 3.3111 - 3.1161 1.00 2367 147 0.2586 0.2605 REMARK 3 7 3.1161 - 2.9603 1.00 2354 142 0.2638 0.3049 REMARK 3 8 2.9603 - 2.8315 1.00 2363 139 0.2588 0.2911 REMARK 3 9 2.8315 - 2.7226 1.00 2348 150 0.2730 0.2989 REMARK 3 10 2.7226 - 2.6287 1.00 2333 135 0.2975 0.3268 REMARK 3 11 2.6287 - 2.5466 1.00 2358 143 0.3292 0.3463 REMARK 3 12 2.5466 - 2.4738 1.00 2347 139 0.3421 0.3601 REMARK 3 13 2.4738 - 2.4087 1.00 2348 143 0.3784 0.3758 REMARK 3 14 2.4087 - 2.3500 0.98 2328 134 0.4048 0.4486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4818 REMARK 3 ANGLE : 0.425 6530 REMARK 3 CHIRALITY : 0.034 724 REMARK 3 PLANARITY : 0.003 786 REMARK 3 DIHEDRAL : 11.128 2684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 8 THROUGH 9 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR (RESID 12 THROUGH 14 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 15 THROUGH 84 OR REMARK 3 (RESID 85 THROUGH 105 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 106 THROUGH 108 OR (RESID 109 REMARK 3 THROUGH 113 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 114 THROUGH 155 OR RESID 157 THROUGH 218 REMARK 3 OR RESID 220 THROUGH 244 OR (RESID 245 REMARK 3 THROUGH 247 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 248 THROUGH 295 OR (RESID 296 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )))) REMARK 3 SELECTION : (CHAIN B AND (RESID 8 THROUGH 9 OR (RESID REMARK 3 12 THROUGH 14 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 15 THROUGH 47 OR (RESID 48 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 49 THROUGH 81 OR (RESID 82 REMARK 3 THROUGH 83 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 84 REMARK 3 THROUGH 86 OR (RESID 87 THROUGH 105 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 106 THROUGH 129 OR REMARK 3 (RESID 130 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 131 REMARK 3 THROUGH 155 OR RESID 157 THROUGH 190 OR REMARK 3 (RESID 191 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 192 THROUGH 199 OR (RESID 200 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 201 OR (RESID 202 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 203 OR (RESID 204 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR (RESID 205 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG )) OR RESID 206 THROUGH 218 OR REMARK 3 RESID 220 THROUGH 274 OR (RESID 275 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 276 THROUGH 296)) REMARK 3 ATOM PAIRS NUMBER : 2463 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.279510 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 28.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 2.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.15 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES, PH 6.5, 50MM NAH2PO4, 30.3% REMARK 280 PEG 300, 50MM DTT, 2.5% 2,5-HEXANEDIOL, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.85000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 297 REMARK 465 GLY A 298 REMARK 465 MET A 299 REMARK 465 TRP B 7 REMARK 465 GLY B 298 REMARK 465 MET B 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 7 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 7 CZ3 CH2 REMARK 470 CYS A 9 SG REMARK 470 CYS A 10 SG REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 ARG A 12 NE CZ NH1 NH2 REMARK 470 VAL A 13 CG1 CG2 REMARK 470 VAL A 14 CG1 CG2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 ASN A 48 CG OD1 ND2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 SER A 87 OG REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 SER A 89 OG REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 PHE A 98 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 99 OG REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 THR A 202 OG1 CG2 REMARK 470 THR A 204 OG1 CG2 REMARK 470 ARG A 205 CD NE CZ NH1 NH2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 ARG B 8 CG CD NE CZ NH1 NH2 REMARK 470 CYS B 9 SG REMARK 470 CYS B 10 SG REMARK 470 GLN B 11 CG CD OE1 NE2 REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 13 CG1 CG2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 LYS B 82 CD CE NZ REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 TYR B 85 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 86 CG CD1 CD2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 94 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 PHE B 98 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 99 OG REMARK 470 GLN B 100 CG CD OE1 NE2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 GLN B 104 CG CD OE1 NE2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 109 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 112 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 LYS B 130 CE NZ REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 ARG B 205 NE CZ NH1 NH2 REMARK 470 PHE B 245 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 246 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 275 CD CE NZ REMARK 470 LEU B 296 CG CD1 CD2 REMARK 470 VAL B 297 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 37 -60.53 -93.03 REMARK 500 GLU A 47 70.09 -108.18 REMARK 500 SER A 284 18.57 -147.37 REMARK 500 CYS B 10 -169.69 61.66 REMARK 500 LEU B 37 -60.34 -93.37 REMARK 500 GLU B 47 69.52 -111.23 REMARK 500 SER B 284 19.02 -148.40 REMARK 500 LEU B 296 -91.09 -87.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 529 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 131 SG 104.9 REMARK 620 3 HIS A 141 ND1 112.8 103.5 REMARK 620 4 CYS A 148 SG 99.6 103.2 130.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 142 SG REMARK 620 2 CYS A 145 SG 119.1 REMARK 620 3 HIS A 155 ND1 120.8 106.7 REMARK 620 4 CYS A 162 SG 99.1 88.8 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 128 SG REMARK 620 2 CYS B 131 SG 110.1 REMARK 620 3 HIS B 141 ND1 105.2 80.1 REMARK 620 4 CYS B 148 SG 114.8 106.9 132.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 142 SG REMARK 620 2 CYS B 145 SG 105.7 REMARK 620 3 HIS B 155 ND1 124.0 111.4 REMARK 620 4 CYS B 162 SG 93.8 66.9 138.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYD A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYD A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYD A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYD B 405 DBREF 6BMM A 7 299 UNP Q5W0Z9 ZDH20_HUMAN 7 299 DBREF 6BMM B 7 299 UNP Q5W0Z9 ZDH20_HUMAN 7 299 SEQRES 1 A 293 TRP ARG CYS CYS GLN ARG VAL VAL GLY TRP VAL PRO VAL SEQRES 2 A 293 LEU PHE ILE THR PHE VAL VAL VAL TRP SER TYR TYR ALA SEQRES 3 A 293 TYR VAL VAL GLU LEU CYS VAL PHE THR ILE PHE GLY ASN SEQRES 4 A 293 GLU GLU ASN GLY LYS THR VAL VAL TYR LEU VAL ALA PHE SEQRES 5 A 293 HIS LEU PHE PHE VAL MET PHE VAL TRP SER TYR TRP MET SEQRES 6 A 293 THR ILE PHE THR SER PRO ALA SER PRO SER LYS GLU PHE SEQRES 7 A 293 TYR LEU SER ASN SER GLU LYS GLU ARG TYR GLU LYS GLU SEQRES 8 A 293 PHE SER GLN GLU ARG GLN GLN GLU ILE LEU ARG ARG ALA SEQRES 9 A 293 ALA ARG ALA LEU PRO ILE TYR THR THR SER ALA SER LYS SEQRES 10 A 293 THR ILE ARG TYR CYS GLU LYS CYS GLN LEU ILE LYS PRO SEQRES 11 A 293 ASP ARG ALA HIS HIS CYS SER ALA CYS ASP SER CYS ILE SEQRES 12 A 293 LEU LYS MET ASP HIS HIS CME PRO TRP VAL ASN ASN CYS SEQRES 13 A 293 VAL GLY PHE SER ASN TYR LYS PHE PHE LEU LEU PHE LEU SEQRES 14 A 293 LEU TYR SER LEU LEU TYR CYS LEU PHE VAL ALA ALA THR SEQRES 15 A 293 VAL LEU GLU TYR PHE ILE LYS PHE TRP THR ASN GLU LEU SEQRES 16 A 293 THR ASP THR ARG ALA LYS PHE HIS VAL LEU PHE LEU PHE SEQRES 17 A 293 PHE VAL SER ALA MET PHE PHE ILE SER VAL LEU SER LEU SEQRES 18 A 293 PHE SER TYR HIS CYS TRP LEU VAL GLY LYS ASN ARG THR SEQRES 19 A 293 THR ILE GLU SER PHE ARG ALA PRO THR PHE SER TYR GLY SEQRES 20 A 293 PRO ASP GLY ASN GLY PHE SER LEU GLY CYS SER LYS ASN SEQRES 21 A 293 TRP ARG GLN VAL PHE GLY ASP GLU LYS LYS TYR TRP LEU SEQRES 22 A 293 LEU PRO ILE PHE SER SER LEU GLY ASP GLY CYS SER PHE SEQRES 23 A 293 PRO THR ARG LEU VAL GLY MET SEQRES 1 B 293 TRP ARG CYS CYS GLN ARG VAL VAL GLY TRP VAL PRO VAL SEQRES 2 B 293 LEU PHE ILE THR PHE VAL VAL VAL TRP SER TYR TYR ALA SEQRES 3 B 293 TYR VAL VAL GLU LEU CYS VAL PHE THR ILE PHE GLY ASN SEQRES 4 B 293 GLU GLU ASN GLY LYS THR VAL VAL TYR LEU VAL ALA PHE SEQRES 5 B 293 HIS LEU PHE PHE VAL MET PHE VAL TRP SER TYR TRP MET SEQRES 6 B 293 THR ILE PHE THR SER PRO ALA SER PRO SER LYS GLU PHE SEQRES 7 B 293 TYR LEU SER ASN SER GLU LYS GLU ARG TYR GLU LYS GLU SEQRES 8 B 293 PHE SER GLN GLU ARG GLN GLN GLU ILE LEU ARG ARG ALA SEQRES 9 B 293 ALA ARG ALA LEU PRO ILE TYR THR THR SER ALA SER LYS SEQRES 10 B 293 THR ILE ARG TYR CYS GLU LYS CYS GLN LEU ILE LYS PRO SEQRES 11 B 293 ASP ARG ALA HIS HIS CYS SER ALA CYS ASP SER CYS ILE SEQRES 12 B 293 LEU LYS MET ASP HIS HIS CME PRO TRP VAL ASN ASN CYS SEQRES 13 B 293 VAL GLY PHE SER ASN TYR LYS PHE PHE LEU LEU PHE LEU SEQRES 14 B 293 LEU TYR SER LEU LEU TYR CYS LEU PHE VAL ALA ALA THR SEQRES 15 B 293 VAL LEU GLU TYR PHE ILE LYS PHE TRP THR ASN GLU LEU SEQRES 16 B 293 THR ASP THR ARG ALA LYS PHE HIS VAL LEU PHE LEU PHE SEQRES 17 B 293 PHE VAL SER ALA MET PHE PHE ILE SER VAL LEU SER LEU SEQRES 18 B 293 PHE SER TYR HIS CYS TRP LEU VAL GLY LYS ASN ARG THR SEQRES 19 B 293 THR ILE GLU SER PHE ARG ALA PRO THR PHE SER TYR GLY SEQRES 20 B 293 PRO ASP GLY ASN GLY PHE SER LEU GLY CYS SER LYS ASN SEQRES 21 B 293 TRP ARG GLN VAL PHE GLY ASP GLU LYS LYS TYR TRP LEU SEQRES 22 B 293 LEU PRO ILE PHE SER SER LEU GLY ASP GLY CYS SER PHE SEQRES 23 B 293 PRO THR ARG LEU VAL GLY MET MODRES 6BMM CME A 156 CYS MODIFIED RESIDUE MODRES 6BMM CME B 156 CYS MODIFIED RESIDUE HET CME A 156 10 HET CME B 156 10 HET ZN A 401 1 HET ZN A 402 1 HET PO4 A 403 5 HET OLB A 404 25 HET DYD A 405 8 HET DYD A 406 8 HET DYD A 407 8 HET DYD A 408 8 HET DYD A 409 8 HET ZN B 401 1 HET ZN B 402 1 HET PO4 B 403 5 HET OLB B 404 25 HET DYD B 405 8 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM DYD (2S,5S)-HEXANE-2,5-DIOL FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 OLB 2(C21 H40 O4) FORMUL 7 DYD 6(C6 H14 O2) FORMUL 17 HOH *52(H2 O) HELIX 1 AA1 ARG A 8 TRP A 16 1 9 HELIX 2 AA2 TRP A 16 VAL A 35 1 20 HELIX 3 AA3 ILE A 42 GLU A 46 5 5 HELIX 4 AA4 GLU A 47 THR A 75 1 29 HELIX 5 AA5 SER A 81 TYR A 85 5 5 HELIX 6 AA6 SER A 87 GLU A 97 1 11 HELIX 7 AA7 SER A 99 ARG A 112 1 14 HELIX 8 AA8 ASN A 167 THR A 198 1 32 HELIX 9 AA9 ASP A 203 ASN A 238 1 36 HELIX 10 AB1 THR A 240 ARG A 246 1 7 HELIX 11 AB2 GLY A 262 GLY A 272 1 11 HELIX 12 AB3 GLU A 274 TRP A 278 5 5 HELIX 13 AB4 CYS B 9 TRP B 16 1 8 HELIX 14 AB5 TRP B 16 VAL B 35 1 20 HELIX 15 AB6 ILE B 42 GLU B 46 5 5 HELIX 16 AB7 GLU B 47 THR B 75 1 29 HELIX 17 AB8 SER B 81 TYR B 85 5 5 HELIX 18 AB9 SER B 87 GLU B 97 1 11 HELIX 19 AC1 SER B 99 ARG B 112 1 14 HELIX 20 AC2 ASN B 167 THR B 198 1 32 HELIX 21 AC3 ASP B 203 ASN B 238 1 36 HELIX 22 AC4 THR B 240 ARG B 246 1 7 HELIX 23 AC5 GLY B 262 GLY B 272 1 11 HELIX 24 AC6 GLU B 274 TRP B 278 5 5 SHEET 1 AA1 3 THR A 118 THR A 119 0 SHEET 2 AA1 3 THR A 249 PHE A 250 -1 O THR A 249 N THR A 119 SHEET 3 AA1 3 GLY A 253 PRO A 254 -1 O GLY A 253 N PHE A 250 SHEET 1 AA2 2 TYR A 127 CYS A 128 0 SHEET 2 AA2 2 LEU A 133 ILE A 134 -1 O LEU A 133 N CYS A 128 SHEET 1 AA3 2 HIS A 140 CYS A 142 0 SHEET 2 AA3 2 SER A 147 ILE A 149 -1 O ILE A 149 N HIS A 140 SHEET 1 AA4 2 HIS A 154 CME A 156 0 SHEET 2 AA4 2 ASN A 161 VAL A 163 -1 O VAL A 163 N HIS A 154 SHEET 1 AA5 3 THR B 118 THR B 119 0 SHEET 2 AA5 3 THR B 249 PHE B 250 -1 O THR B 249 N THR B 119 SHEET 3 AA5 3 GLY B 253 PRO B 254 -1 O GLY B 253 N PHE B 250 SHEET 1 AA6 2 TYR B 127 CYS B 128 0 SHEET 2 AA6 2 LEU B 133 ILE B 134 -1 O LEU B 133 N CYS B 128 SHEET 1 AA7 2 HIS B 140 CYS B 142 0 SHEET 2 AA7 2 SER B 147 ILE B 149 -1 O ILE B 149 N HIS B 140 SHEET 1 AA8 2 HIS B 154 CME B 156 0 SHEET 2 AA8 2 ASN B 161 VAL B 163 -1 O VAL B 163 N HIS B 154 SSBOND 1 CYS B 145 CYS B 162 1555 1555 2.56 LINK SG CYS A 128 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 131 ZN ZN A 402 1555 1555 2.31 LINK ND1 HIS A 141 ZN ZN A 402 1555 1555 2.03 LINK SG CYS A 142 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 145 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 148 ZN ZN A 402 1555 1555 2.32 LINK C HIS A 155 N CME A 156 1555 1555 1.33 LINK ND1 HIS A 155 ZN ZN A 401 1555 1555 2.01 LINK C CME A 156 N PRO A 157 1555 1555 1.34 LINK SG CYS A 162 ZN ZN A 401 1555 1555 2.25 LINK SG CYS B 128 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 131 ZN ZN B 401 1555 1555 2.30 LINK ND1 HIS B 141 ZN ZN B 401 1555 1555 2.03 LINK SG CYS B 142 ZN ZN B 402 1555 1555 2.33 LINK SG CYS B 145 ZN ZN B 402 1555 1555 2.33 LINK SG CYS B 148 ZN ZN B 401 1555 1555 2.32 LINK C HIS B 155 N CME B 156 1555 1555 1.33 LINK ND1 HIS B 155 ZN ZN B 402 1555 1555 2.03 LINK C CME B 156 N PRO B 157 1555 1555 1.34 LINK SG CYS B 162 ZN ZN B 402 1555 1555 2.31 SITE 1 AC1 4 CYS A 142 CYS A 145 HIS A 155 CYS A 162 SITE 1 AC2 4 CYS A 128 CYS A 131 HIS A 141 CYS A 148 SITE 1 AC3 4 LYS A 135 HIS A 140 HIS A 141 HOH A 516 SITE 1 AC4 8 CME A 156 PRO A 157 TRP A 158 PHE A 174 SITE 2 AC4 8 TYR A 181 PHE A 220 VAL A 224 LEU A 227 SITE 1 AC5 1 LEU A 279 SITE 1 AC6 2 TYR A 277 PHE A 283 SITE 1 AC7 1 TRP A 67 SITE 1 AC8 4 TRP A 267 PHE A 271 TRP A 278 LEU A 279 SITE 1 AC9 3 GLU A 191 ILE A 194 VAL B 53 SITE 1 AD1 4 CYS B 128 CYS B 131 HIS B 141 CYS B 148 SITE 1 AD2 4 CYS B 142 CYS B 145 HIS B 155 CYS B 162 SITE 1 AD3 4 ARG B 126 LYS B 135 HIS B 140 HIS B 141 SITE 1 AD4 4 CME B 156 PRO B 157 TRP B 158 PHE B 220 SITE 1 AD5 2 LYS B 275 LYS B 276 CRYST1 86.519 57.700 94.098 90.00 115.51 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011558 0.000000 0.005515 0.00000 SCALE2 0.000000 0.017331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011775 0.00000