HEADER APOPTOSIS 23-MAY-17 5VX0 TITLE BAK IN COMPLEX WITH BIM-H3GLG COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2 HOMOLOGOUS ANTAGONIST/KILLER; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 23-186; COMPND 5 SYNONYM: APOPTOSIS REGULATOR BAK,BCL-2-LIKE PROTEIN 7,BCL2-L-7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BCL-2-LIKE PROTEIN 11; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 141-166; COMPND 12 SYNONYM: BCL2-L-11,BCL2-INTERACTING MEDIATOR OF CELL DEATH; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAK1, BAK, BCL2L7, CDN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, BCL-2 FAMILY, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BROUWER,P.LAN,G.LESSENE,P.M.COLMAN,P.E.CZABOTAR REVDAT 3 08-JAN-20 5VX0 1 REMARK REVDAT 2 29-NOV-17 5VX0 1 JRNL REVDAT 1 15-NOV-17 5VX0 0 JRNL AUTH J.M.BROUWER,P.LAN,A.D.COWAN,J.P.BERNARDINI,R.W.BIRKINSHAW, JRNL AUTH 2 M.F.VAN DELFT,B.E.SLEEBS,A.Y.ROBIN,A.WARDAK,I.K.TAN, JRNL AUTH 3 B.RELJIC,E.F.LEE,W.D.FAIRLIE,M.J.CALL,B.J.SMITH,G.DEWSON, JRNL AUTH 4 G.LESSENE,P.M.COLMAN,P.E.CZABOTAR JRNL TITL CONVERSION OF BIM-BH3 FROM ACTIVATOR TO INHIBITOR OF BAK JRNL TITL 2 THROUGH STRUCTURE-BASED DESIGN. JRNL REF MOL. CELL V. 68 659 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 29149594 JRNL DOI 10.1016/J.MOLCEL.2017.11.001 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7108 - 3.8530 1.00 3641 153 0.1373 0.1570 REMARK 3 2 3.8530 - 3.0585 1.00 3474 145 0.1275 0.1502 REMARK 3 3 3.0585 - 2.6719 1.00 3419 144 0.1395 0.1664 REMARK 3 4 2.6719 - 2.4276 1.00 3419 144 0.1440 0.2054 REMARK 3 5 2.4276 - 2.2536 1.00 3397 143 0.1468 0.1826 REMARK 3 6 2.2536 - 2.1208 1.00 3409 143 0.1467 0.1899 REMARK 3 7 2.1208 - 2.0146 1.00 3364 142 0.1607 0.2193 REMARK 3 8 2.0146 - 1.9269 1.00 3353 141 0.1788 0.2659 REMARK 3 9 1.9269 - 1.8527 1.00 3371 140 0.2161 0.2513 REMARK 3 10 1.8527 - 1.7887 1.00 3371 142 0.2567 0.2873 REMARK 3 11 1.7887 - 1.7328 1.00 3368 142 0.2762 0.3122 REMARK 3 12 1.7328 - 1.6833 1.00 3352 139 0.3135 0.3376 REMARK 3 13 1.6833 - 1.6390 1.00 3362 141 0.3346 0.3722 REMARK 3 14 1.6390 - 1.5990 0.98 3233 136 0.3690 0.4090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3188 REMARK 3 ANGLE : 0.857 4325 REMARK 3 CHIRALITY : 0.049 454 REMARK 3 PLANARITY : 0.005 578 REMARK 3 DIHEDRAL : 18.046 1874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4344 25.2931 23.6969 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1721 REMARK 3 T33: 0.1738 T12: 0.0063 REMARK 3 T13: 0.0028 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.3667 L22: 1.1087 REMARK 3 L33: 1.0480 L12: 0.0602 REMARK 3 L13: 0.1561 L23: 0.2725 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.1207 S13: 0.0699 REMARK 3 S21: 0.1167 S22: -0.0046 S23: 0.0197 REMARK 3 S31: -0.0302 S32: -0.0194 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1236 11.8587 36.0740 REMARK 3 T TENSOR REMARK 3 T11: 0.2544 T22: 0.2335 REMARK 3 T33: 0.1717 T12: -0.0311 REMARK 3 T13: -0.0082 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 4.5848 L22: 7.5652 REMARK 3 L33: 1.2898 L12: -5.8902 REMARK 3 L13: 0.1366 L23: -0.3450 REMARK 3 S TENSOR REMARK 3 S11: -0.1889 S12: -0.1845 S13: 0.0543 REMARK 3 S21: 0.2692 S22: 0.1525 S23: -0.0818 REMARK 3 S31: 0.0966 S32: -0.0373 S33: 0.0483 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3355 9.0837 23.5192 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.1601 REMARK 3 T33: 0.2454 T12: 0.0412 REMARK 3 T13: 0.0416 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 8.3746 L22: 7.2740 REMARK 3 L33: 8.4956 L12: 6.7084 REMARK 3 L13: 7.1439 L23: 5.7490 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.0999 S13: -0.6585 REMARK 3 S21: -0.2100 S22: 0.1417 S23: -0.6226 REMARK 3 S31: 0.0571 S32: 0.3410 S33: -0.0417 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4717 15.5345 22.8759 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.0991 REMARK 3 T33: 0.1413 T12: 0.0262 REMARK 3 T13: 0.0023 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 4.3484 L22: 1.2072 REMARK 3 L33: 1.7533 L12: 1.9786 REMARK 3 L13: 1.6254 L23: 1.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.0320 S13: -0.1012 REMARK 3 S21: 0.0293 S22: 0.0067 S23: -0.0703 REMARK 3 S31: 0.1097 S32: 0.0375 S33: -0.0380 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2797 14.2787 14.1239 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.0968 REMARK 3 T33: 0.1337 T12: -0.0180 REMARK 3 T13: -0.0099 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 6.3584 L22: 5.9308 REMARK 3 L33: 5.4688 L12: -2.7840 REMARK 3 L13: -0.5186 L23: 2.8842 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: -0.0652 S13: -0.2859 REMARK 3 S21: 0.1397 S22: 0.0833 S23: 0.0964 REMARK 3 S31: 0.1674 S32: 0.0266 S33: 0.0570 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3500 5.5306 29.0148 REMARK 3 T TENSOR REMARK 3 T11: 0.1713 T22: 0.1262 REMARK 3 T33: 0.1251 T12: -0.0304 REMARK 3 T13: 0.0208 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.5934 L22: 8.2083 REMARK 3 L33: 5.1295 L12: -5.1652 REMARK 3 L13: 3.1693 L23: -3.4344 REMARK 3 S TENSOR REMARK 3 S11: 0.0982 S12: -0.1304 S13: -0.1938 REMARK 3 S21: 0.0926 S22: -0.0321 S23: -0.0315 REMARK 3 S31: 0.1558 S32: -0.0297 S33: -0.0887 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2434 29.7232 15.5583 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.1889 REMARK 3 T33: 0.1234 T12: 0.0041 REMARK 3 T13: -0.0029 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.7237 L22: 7.1893 REMARK 3 L33: 3.5377 L12: -0.0405 REMARK 3 L13: -0.8802 L23: 2.5118 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.2684 S13: 0.2463 REMARK 3 S21: 0.1320 S22: 0.1055 S23: -0.1383 REMARK 3 S31: -0.0494 S32: 0.2525 S33: -0.1442 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0527 34.3457 19.2691 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.1604 REMARK 3 T33: 0.1723 T12: -0.0219 REMARK 3 T13: -0.0229 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 4.0870 L22: 0.8044 REMARK 3 L33: 2.5698 L12: -0.4752 REMARK 3 L13: -1.9579 L23: -0.3927 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.0839 S13: 0.2283 REMARK 3 S21: 0.0076 S22: -0.0134 S23: -0.0507 REMARK 3 S31: -0.1637 S32: 0.0786 S33: -0.0132 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 83 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5150 44.7055 3.5616 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.1350 REMARK 3 T33: 0.2364 T12: 0.0078 REMARK 3 T13: 0.0313 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 4.0841 L22: 3.0725 REMARK 3 L33: 6.5081 L12: -2.9485 REMARK 3 L13: 5.0436 L23: -3.3301 REMARK 3 S TENSOR REMARK 3 S11: -0.2553 S12: -0.0828 S13: 0.5533 REMARK 3 S21: 0.0477 S22: 0.0200 S23: -0.1959 REMARK 3 S31: -0.3208 S32: 0.0473 S33: 0.3359 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 101 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8238 30.9971 -0.3436 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.1907 REMARK 3 T33: 0.1571 T12: -0.0301 REMARK 3 T13: -0.0476 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 5.2117 L22: 6.2245 REMARK 3 L33: 5.6862 L12: -5.2332 REMARK 3 L13: -4.8311 L23: 3.8160 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.5904 S13: -0.2424 REMARK 3 S21: 0.0349 S22: -0.2149 S23: 0.3711 REMARK 3 S31: 0.2669 S32: -0.5621 S33: 0.1247 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 125 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1855 29.3014 7.4354 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1676 REMARK 3 T33: 0.1270 T12: 0.0002 REMARK 3 T13: -0.0170 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.4081 L22: 1.4735 REMARK 3 L33: 1.0102 L12: -1.0617 REMARK 3 L13: -0.9071 L23: 0.7427 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.0529 S13: -0.0252 REMARK 3 S21: -0.0004 S22: 0.0154 S23: 0.0498 REMARK 3 S31: 0.0059 S32: -0.0097 S33: -0.0232 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 175 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0222 26.9110 10.4398 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1903 REMARK 3 T33: 0.1470 T12: 0.0105 REMARK 3 T13: -0.0142 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 8.4976 L22: 9.2989 REMARK 3 L33: 8.1048 L12: -2.2812 REMARK 3 L13: 4.6839 L23: 4.7499 REMARK 3 S TENSOR REMARK 3 S11: -0.1947 S12: 0.1049 S13: 0.6493 REMARK 3 S21: -0.3042 S22: 0.0122 S23: -0.4330 REMARK 3 S31: -0.2610 S32: 0.4523 S33: 0.0834 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 142 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7789 37.5906 -2.2502 REMARK 3 T TENSOR REMARK 3 T11: 0.2307 T22: 0.1927 REMARK 3 T33: 0.1588 T12: -0.0109 REMARK 3 T13: 0.0427 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 3.5577 L22: 4.5119 REMARK 3 L33: 6.4192 L12: -2.2196 REMARK 3 L13: 4.4822 L23: -1.3694 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: 0.2459 S13: 0.2780 REMARK 3 S21: -0.3514 S22: -0.1024 S23: -0.1183 REMARK 3 S31: -0.0851 S32: 0.0103 S33: -0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000227657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 44.693 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.15590 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MAGNESIUM CHLORIDE, 25 % PEG REMARK 280 3350, AND 100 MM BIS-TRIS CHLORIDE (PH 6.5), VAPOR DIFFUSION, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.04600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.51900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.61550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.51900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.04600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.61550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 186 REMARK 465 ARG B 166 REMARK 465 GLY C 17 REMARK 465 PRO C 18 REMARK 465 LEU C 19 REMARK 465 GLY C 20 REMARK 465 GLU C 50 REMARK 465 GLY C 51 REMARK 465 VAL C 52 REMARK 465 ALA C 53 REMARK 465 GLY C 186 REMARK 465 ASP D 141 REMARK 465 ARG D 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 SER C 21 OG REMARK 470 ARG D 165 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 86 O HOH A 301 2.00 REMARK 500 O HOH A 322 O HOH A 476 2.00 REMARK 500 O HOH A 453 O HOH C 398 2.02 REMARK 500 OE1 GLN C 77 O HOH C 301 2.04 REMARK 500 NH2 ARG C 76 O HOH C 302 2.07 REMARK 500 O HOH C 411 O HOH C 459 2.10 REMARK 500 O HOH A 344 O HOH C 432 2.12 REMARK 500 O HOH A 340 O HOH A 425 2.13 REMARK 500 O HOH C 396 O HOH C 449 2.17 REMARK 500 O HOH A 318 O HOH A 478 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 498 O HOH C 325 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 166 -7.63 75.61 REMARK 500 SER A 166 -7.36 71.45 REMARK 500 SER C 68 121.90 -37.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 516 O REMARK 620 2 HOH A 500 O 96.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 505 O REMARK 620 2 HOH A 518 O 83.0 REMARK 620 3 HOH C 462 O 93.2 89.3 REMARK 620 4 HOH A 315 O 92.5 94.4 173.5 REMARK 620 5 HOH A 386 O 171.2 89.4 91.1 83.7 REMARK 620 6 HOH A 358 O 92.5 175.4 89.6 87.1 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 439 O REMARK 620 2 HOH C 335 O 89.7 REMARK 620 3 HOH C 346 O 95.2 94.2 REMARK 620 4 HOH A 494 O 88.6 176.7 88.9 REMARK 620 5 HOH C 342 O 179.0 89.3 85.1 92.3 REMARK 620 6 HOH C 452 O 95.9 91.9 167.3 85.3 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 202 DBREF 5VX0 A 23 186 UNP Q16611 BAK_HUMAN 23 186 DBREF 5VX0 B 141 166 UNP O43521 B2L11_HUMAN 141 166 DBREF 5VX0 C 23 186 UNP Q16611 BAK_HUMAN 23 186 DBREF 5VX0 D 141 166 UNP O43521 B2L11_HUMAN 141 166 SEQADV 5VX0 GLY A 17 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 PRO A 18 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 LEU A 19 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 GLY A 20 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 SER A 21 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 MET A 22 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 SER A 166 UNP Q16611 CYS 166 ENGINEERED MUTATION SEQADV 5VX0 ARG B 147 UNP O43521 TRP 147 ENGINEERED MUTATION SEQADV 5VX0 THR B 162 UNP O43521 TYR 162 ENGINEERED MUTATION SEQADV 5VX0 GLY C 17 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 PRO C 18 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 LEU C 19 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 GLY C 20 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 SER C 21 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 MET C 22 UNP Q16611 EXPRESSION TAG SEQADV 5VX0 SER C 166 UNP Q16611 CYS 166 ENGINEERED MUTATION SEQADV 5VX0 ARG D 147 UNP O43521 TRP 147 ENGINEERED MUTATION SEQADV 5VX0 THR D 162 UNP O43521 TYR 162 ENGINEERED MUTATION SEQRES 1 A 170 GLY PRO LEU GLY SER MET SER GLU GLU GLN VAL ALA GLN SEQRES 2 A 170 ASP THR GLU GLU VAL PHE ARG SER TYR VAL PHE TYR ARG SEQRES 3 A 170 HIS GLN GLN GLU GLN GLU ALA GLU GLY VAL ALA ALA PRO SEQRES 4 A 170 ALA ASP PRO GLU MET VAL THR LEU PRO LEU GLN PRO SER SEQRES 5 A 170 SER THR MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE SEQRES 6 A 170 GLY ASP ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN SEQRES 7 A 170 THR MET LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA SEQRES 8 A 170 TYR GLU TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SEQRES 9 A 170 SER GLY ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY SEQRES 10 A 170 PHE GLY TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY SEQRES 11 A 170 LEU THR GLY PHE LEU GLY GLN VAL THR ARG PHE VAL VAL SEQRES 12 A 170 ASP PHE MET LEU HIS HIS SER ILE ALA ARG TRP ILE ALA SEQRES 13 A 170 GLN ARG GLY GLY TRP VAL ALA ALA LEU ASN LEU GLY ASN SEQRES 14 A 170 GLY SEQRES 1 B 26 ASP MET ARG PRO GLU ILE ARG ILE ALA GLN GLU LEU ARG SEQRES 2 B 26 ARG 9R7 GLY ASP GLU PHE ASN ALA THR TYR ALA ARG ARG SEQRES 1 C 170 GLY PRO LEU GLY SER MET SER GLU GLU GLN VAL ALA GLN SEQRES 2 C 170 ASP THR GLU GLU VAL PHE ARG SER TYR VAL PHE TYR ARG SEQRES 3 C 170 HIS GLN GLN GLU GLN GLU ALA GLU GLY VAL ALA ALA PRO SEQRES 4 C 170 ALA ASP PRO GLU MET VAL THR LEU PRO LEU GLN PRO SER SEQRES 5 C 170 SER THR MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE SEQRES 6 C 170 GLY ASP ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN SEQRES 7 C 170 THR MET LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA SEQRES 8 C 170 TYR GLU TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SEQRES 9 C 170 SER GLY ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY SEQRES 10 C 170 PHE GLY TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY SEQRES 11 C 170 LEU THR GLY PHE LEU GLY GLN VAL THR ARG PHE VAL VAL SEQRES 12 C 170 ASP PHE MET LEU HIS HIS SER ILE ALA ARG TRP ILE ALA SEQRES 13 C 170 GLN ARG GLY GLY TRP VAL ALA ALA LEU ASN LEU GLY ASN SEQRES 14 C 170 GLY SEQRES 1 D 26 ASP MET ARG PRO GLU ILE ARG ILE ALA GLN GLU LEU ARG SEQRES 2 D 26 ARG 9R7 GLY ASP GLU PHE ASN ALA THR TYR ALA ARG ARG MODRES 5VX0 9R7 B 155 ILE MODIFIED RESIDUE MODRES 5VX0 9R7 D 155 ILE MODIFIED RESIDUE HET 9R7 B 155 13 HET 9R7 D 155 13 HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET MG A 205 1 HET MG C 201 1 HET EDO C 202 10 HETNAM 9R7 L-GAMMA-GLUTAMYLGLYCINE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 9R7 2(C7 H12 N2 O5) FORMUL 5 MG 6(MG 2+) FORMUL 11 EDO C2 H6 O2 FORMUL 12 HOH *434(H2 O) HELIX 1 AA1 SER A 23 GLN A 47 1 25 HELIX 2 AA2 GLU A 48 VAL A 52 5 5 HELIX 3 AA3 ASP A 57 THR A 62 1 6 HELIX 4 AA4 SER A 69 GLY A 82 1 14 HELIX 5 AA5 GLY A 82 TYR A 89 1 8 HELIX 6 AA6 TYR A 89 GLN A 101 1 13 HELIX 7 AA7 ASN A 106 PHE A 119 1 14 HELIX 8 AA8 ASN A 124 HIS A 145 1 22 HELIX 9 AA9 PHE A 150 HIS A 165 1 16 HELIX 10 AB1 SER A 166 ARG A 174 1 9 HELIX 11 AB2 GLY A 175 LEU A 183 5 9 HELIX 12 AB3 ARG B 143 ALA B 164 1 22 HELIX 13 AB4 SER C 23 GLN C 47 1 25 HELIX 14 AB5 ASP C 57 THR C 62 1 6 HELIX 15 AB6 SER C 69 GLY C 82 1 14 HELIX 16 AB7 GLY C 82 TYR C 89 1 8 HELIX 17 AB8 TYR C 89 GLN C 101 1 13 HELIX 18 AB9 ASN C 106 SER C 121 1 16 HELIX 19 AC1 ASN C 124 HIS C 145 1 22 HELIX 20 AC2 PHE C 150 HIS C 165 1 16 HELIX 21 AC3 SER C 166 GLN C 173 1 8 HELIX 22 AC4 ARG C 174 GLY C 175 5 2 HELIX 23 AC5 GLY C 176 LEU C 183 5 8 HELIX 24 AC6 ARG D 143 ALA D 164 1 22 LINK OD2 ASP A 30 MG MG A 201 1555 1555 2.64 LINK C ARG B 154 N 9R7 B 155 1555 1555 1.33 LINK C 9R7 B 155 N GLY B 156 1555 1555 1.33 LINK C ARG D 154 N 9R7 D 155 1555 1555 1.33 LINK C 9R7 D 155 N GLY D 156 1555 1555 1.32 LINK MG MG A 202 O HOH A 516 1555 1555 2.88 LINK MG MG A 202 O HOH A 500 1555 1555 2.74 LINK MG MG A 205 O HOH A 505 1555 1555 2.10 LINK MG MG A 205 O HOH A 518 1555 1555 2.10 LINK MG MG A 205 O HOH C 462 1555 1555 1.97 LINK MG MG A 205 O HOH A 315 1555 1555 2.08 LINK MG MG A 205 O HOH A 386 1555 1555 2.06 LINK MG MG A 205 O HOH A 358 1555 1555 2.08 LINK MG MG C 201 O HOH A 439 1555 1555 2.04 LINK MG MG C 201 O HOH C 335 1555 1555 2.07 LINK MG MG C 201 O HOH C 346 1555 1555 2.04 LINK MG MG C 201 O HOH A 494 1555 1555 2.18 LINK MG MG C 201 O HOH C 342 1555 1555 2.05 LINK MG MG C 201 O HOH C 452 1555 1555 2.01 SITE 1 AC1 4 MET A 22 ASP A 30 GLY A 176 TRP A 177 SITE 1 AC2 5 THR A 103 ALA A 104 HOH A 460 HOH A 500 SITE 2 AC2 5 HOH A 516 SITE 1 AC3 3 ASN A 124 TRP A 125 ASN B 160 SITE 1 AC4 3 ARG A 76 MET B 142 ARG B 147 SITE 1 AC5 6 HOH A 315 HOH A 358 HOH A 386 HOH A 505 SITE 2 AC5 6 HOH A 518 HOH C 462 SITE 1 AC6 6 HOH A 439 HOH A 494 HOH C 335 HOH C 342 SITE 2 AC6 6 HOH C 346 HOH C 452 SITE 1 AC7 3 ARG C 88 GLN C 101 HOH C 319 CRYST1 48.092 63.231 121.038 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008262 0.00000