HEADER SIGNALING PROTEIN 09-MAR-17 5V4K TITLE CRYSTAL STRUCTURE OF NEDD4 LIR-FUSED HUMAN LC3B_2-119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B, COMPND 3 MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B,MICROTUBULE- COMPND 4 ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 5 CHAIN: A, B; COMPND 6 FRAGMENT: UNP RESIDUES 2-119,UNP RESIDUES 2-119,UNP RESIDUES 2-119, COMPND 7 UNP RESIDUES 2-119; COMPND 8 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- COMPND 9 LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B COMPND 10 LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 COMPND 11 LIGHT CHAIN 3 BETA,AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED COMPND 12 UBIQUITIN-LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2, COMPND 13 MAP1A/MAP1B LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED COMPND 14 PROTEIN 1 LIGHT CHAIN 3 BETA,AUTOPHAGY-RELATED PROTEIN LC3 B, COMPND 15 AUTOPHAGY-RELATED UBIQUITIN-LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3- COMPND 16 LIKE PROTEIN 2,MAP1A/MAP1B LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B, COMPND 17 MICROTUBULE-ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 BETA; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP1LC3B, MAP1ALC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, UBIQUITIN E3 LIGASE, HECT, LIR, LC3, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.QIU,Y.ZHENG,B.SCHULMAN REVDAT 3 13-APR-22 5V4K 1 REMARK REVDAT 2 02-AUG-17 5V4K 1 JRNL REVDAT 1 17-MAY-17 5V4K 0 JRNL AUTH Y.QIU,Y.ZHENG,K.P.WU,B.A.SCHULMAN JRNL TITL INSIGHTS INTO LINKS BETWEEN AUTOPHAGY AND THE UBIQUITIN JRNL TITL 2 SYSTEM FROM THE STRUCTURE OF LC3B BOUND TO THE LIR MOTIF JRNL TITL 3 FROM THE E3 LIGASE NEDD4. JRNL REF PROTEIN SCI. V. 26 1674 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28470758 JRNL DOI 10.1002/PRO.3186 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5070 - 3.8134 1.00 2999 161 0.1631 0.1957 REMARK 3 2 3.8134 - 3.0270 1.00 2834 153 0.1777 0.2234 REMARK 3 3 3.0270 - 2.6444 1.00 2781 168 0.1966 0.2567 REMARK 3 4 2.6444 - 2.4027 1.00 2766 157 0.1937 0.2538 REMARK 3 5 2.4027 - 2.2305 1.00 2768 139 0.1952 0.2584 REMARK 3 6 2.2305 - 2.0990 1.00 2774 129 0.2177 0.3144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2060 REMARK 3 ANGLE : 0.749 2789 REMARK 3 CHIRALITY : 0.051 315 REMARK 3 PLANARITY : 0.005 358 REMARK 3 DIHEDRAL : 16.647 1259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 1026 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6893 -4.6016 -7.1562 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.4038 REMARK 3 T33: 0.3091 T12: 0.1599 REMARK 3 T13: 0.0420 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 1.7404 L22: 6.2651 REMARK 3 L33: 4.1271 L12: -1.3533 REMARK 3 L13: -0.7174 L23: 4.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.1734 S12: 0.1962 S13: -0.0475 REMARK 3 S21: -0.4318 S22: -0.4212 S23: -0.4213 REMARK 3 S31: -0.0738 S32: 0.1787 S33: 0.0530 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1027 THROUGH 1118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7552 8.8277 -15.9553 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.1371 REMARK 3 T33: 0.1865 T12: -0.0334 REMARK 3 T13: -0.0196 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 2.0708 L22: 2.3354 REMARK 3 L33: 6.0084 L12: 0.1596 REMARK 3 L13: -0.8993 L23: -0.7563 REMARK 3 S TENSOR REMARK 3 S11: -0.2094 S12: 0.0049 S13: 0.0615 REMARK 3 S21: -0.2599 S22: 0.0685 S23: -0.0295 REMARK 3 S31: 0.0613 S32: 0.2894 S33: 0.1211 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.4781 -44.2499 -6.9368 REMARK 3 T TENSOR REMARK 3 T11: 0.4131 T22: 0.4094 REMARK 3 T33: 0.7857 T12: 0.3467 REMARK 3 T13: -0.0924 T23: 0.2278 REMARK 3 L TENSOR REMARK 3 L11: 4.3946 L22: 7.4846 REMARK 3 L33: 5.2744 L12: 0.0867 REMARK 3 L13: -0.7562 L23: -1.3147 REMARK 3 S TENSOR REMARK 3 S11: 0.3373 S12: 0.0100 S13: -0.9555 REMARK 3 S21: -0.2763 S22: -0.0011 S23: -0.4130 REMARK 3 S31: 0.8834 S32: 0.4155 S33: -0.1215 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 269 THROUGH 1012 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1827 -21.8038 -17.9496 REMARK 3 T TENSOR REMARK 3 T11: 0.5446 T22: 0.2621 REMARK 3 T33: 0.4695 T12: -0.0573 REMARK 3 T13: 0.0743 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 1.3784 L22: 0.2706 REMARK 3 L33: 1.6587 L12: 0.6489 REMARK 3 L13: -1.3229 L23: -0.6424 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.4495 S13: -0.5155 REMARK 3 S21: -0.2602 S22: -0.2061 S23: 0.2638 REMARK 3 S31: -0.4721 S32: 0.1986 S33: 0.1919 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1013 THROUGH 1026 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.6535 -10.4273 -32.0947 REMARK 3 T TENSOR REMARK 3 T11: 0.4224 T22: 0.2333 REMARK 3 T33: 0.2657 T12: -0.0633 REMARK 3 T13: -0.0048 T23: -0.1038 REMARK 3 L TENSOR REMARK 3 L11: 8.2778 L22: 8.9173 REMARK 3 L33: 3.5450 L12: -7.1910 REMARK 3 L13: 2.6677 L23: -3.4087 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.5617 S13: -0.5483 REMARK 3 S21: -0.7035 S22: -0.1480 S23: 0.5711 REMARK 3 S31: 0.7999 S32: -0.0156 S33: 0.1006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1027 THROUGH 1037 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.6860 -5.0621 -21.8789 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: 0.2144 REMARK 3 T33: 0.2434 T12: -0.1506 REMARK 3 T13: 0.0285 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 2.3718 L22: 3.4015 REMARK 3 L33: 4.6447 L12: -1.4514 REMARK 3 L13: 1.1585 L23: -2.6535 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: 0.0487 S13: -0.5338 REMARK 3 S21: 0.3866 S22: -0.0958 S23: 0.3780 REMARK 3 S31: 0.4955 S32: -0.5882 S33: -0.1349 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1038 THROUGH 1050 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.2981 -11.9647 -6.7603 REMARK 3 T TENSOR REMARK 3 T11: 0.8304 T22: 0.4154 REMARK 3 T33: 0.3912 T12: -0.1592 REMARK 3 T13: 0.1093 T23: 0.1934 REMARK 3 L TENSOR REMARK 3 L11: 3.3257 L22: 2.9989 REMARK 3 L33: 4.2115 L12: -0.9893 REMARK 3 L13: -3.5005 L23: 2.2225 REMARK 3 S TENSOR REMARK 3 S11: -0.4035 S12: -0.8489 S13: -0.3862 REMARK 3 S21: 0.4859 S22: 0.5275 S23: 0.1775 REMARK 3 S31: 0.8962 S32: 0.1818 S33: -0.1054 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1051 THROUGH 1071 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.4420 0.1518 -14.5793 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.3703 REMARK 3 T33: 0.2490 T12: -0.1071 REMARK 3 T13: 0.0353 T23: -0.0939 REMARK 3 L TENSOR REMARK 3 L11: 0.6645 L22: 2.3058 REMARK 3 L33: 5.9677 L12: 0.0067 REMARK 3 L13: 1.9404 L23: -0.5341 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: -0.2883 S13: 0.0364 REMARK 3 S21: 0.1729 S22: -0.0747 S23: 0.1189 REMARK 3 S31: 0.0634 S32: -1.4856 S33: 0.1392 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1072 THROUGH 1094 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.0340 0.5292 -8.1379 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.2849 REMARK 3 T33: 0.2282 T12: -0.1012 REMARK 3 T13: -0.0064 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 2.0592 L22: 2.3300 REMARK 3 L33: 2.4944 L12: -1.7335 REMARK 3 L13: 0.6878 L23: 0.3818 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: -0.4897 S13: 0.3128 REMARK 3 S21: -0.0006 S22: 0.0105 S23: 0.0637 REMARK 3 S31: 0.3209 S32: -0.1763 S33: 0.0129 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1095 THROUGH 1117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.0333 -2.6734 -18.4676 REMARK 3 T TENSOR REMARK 3 T11: 0.2604 T22: 0.1959 REMARK 3 T33: 0.1760 T12: -0.0688 REMARK 3 T13: 0.0156 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.6241 L22: 1.6381 REMARK 3 L33: 4.4195 L12: -0.6837 REMARK 3 L13: -0.6267 L23: -2.0252 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: -0.4269 S13: 0.0870 REMARK 3 S21: 0.2979 S22: -0.1672 S23: 0.0161 REMARK 3 S31: -0.0035 S32: 0.3251 S33: 0.1317 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 5.0, 1.2M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.78500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.71500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.78500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.90500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.71500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.90500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 258 REMARK 465 SER A 259 REMARK 465 GLN A 260 REMARK 465 GLU A 261 REMARK 465 SER A 262 REMARK 465 SER A 263 REMARK 465 PHE A 1119 REMARK 465 GLY B 258 REMARK 465 SER B 259 REMARK 465 GLN B 260 REMARK 465 GLU B 261 REMARK 465 SER B 262 REMARK 465 SER B 263 REMARK 465 THR B 1118 REMARK 465 PHE B 1119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 SER A1003 OG REMARK 470 GLU A1004 CG CD OE1 OE2 REMARK 470 LYS A1005 CG CD CE NZ REMARK 470 LYS A1039 CG CD CE NZ REMARK 470 ASP A1048 CG OD1 OD2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 ASN B 265 CG OD1 ND2 REMARK 470 SER B1003 OG REMARK 470 GLU B1004 CG CD OE1 OE2 REMARK 470 ARG B1010 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1025 CG CD OE1 OE2 REMARK 470 LYS B1039 CG CD CE NZ REMARK 470 LYS B1042 CG CD CE NZ REMARK 470 ASP B1048 CG OD1 OD2 REMARK 470 LYS B1049 CG CD CE NZ REMARK 470 LYS B1051 CG CD CE NZ REMARK 470 HIS B1057 CG ND1 CD2 CE1 NE2 REMARK 470 SER B1090 OG REMARK 470 GLU B1105 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1316 O HOH B 1344 2.05 REMARK 500 O HOH A 1353 O HOH A 1362 2.10 REMARK 500 O HOH B 1331 O HOH B 1348 2.14 REMARK 500 O HOH A 1365 O HOH A 1371 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1362 O HOH B 1352 4445 2.07 REMARK 500 O HOH A 1353 O HOH B 1310 4445 2.14 REMARK 500 O HOH B 1308 O HOH B 1357 5354 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1202 DBREF 5V4K A 258 271 PDB 5V4K 5V4K 258 271 DBREF 5V4K A 1002 1119 UNP Q9GZQ8 MLP3B_HUMAN 2 119 DBREF 5V4K B 258 271 PDB 5V4K 5V4K 258 271 DBREF 5V4K B 1002 1119 UNP Q9GZQ8 MLP3B_HUMAN 2 119 SEQRES 1 A 132 GLY SER GLN GLU SER SER GLU ASN TRP GLU ILE ILE GLY SEQRES 2 A 132 SER PRO SER GLU LYS THR PHE LYS GLN ARG ARG THR PHE SEQRES 3 A 132 GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG GLU GLN SEQRES 4 A 132 HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS SEQRES 5 A 132 GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR LYS PHE SEQRES 6 A 132 LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU ILE LYS SEQRES 7 A 132 ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN GLN ALA SEQRES 8 A 132 PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SER VAL SEQRES 9 A 132 SER THR PRO ILE SER GLU VAL TYR GLU SER GLU LYS ASP SEQRES 10 A 132 GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 11 A 132 THR PHE SEQRES 1 B 132 GLY SER GLN GLU SER SER GLU ASN TRP GLU ILE ILE GLY SEQRES 2 B 132 SER PRO SER GLU LYS THR PHE LYS GLN ARG ARG THR PHE SEQRES 3 B 132 GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG GLU GLN SEQRES 4 B 132 HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS SEQRES 5 B 132 GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR LYS PHE SEQRES 6 B 132 LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU ILE LYS SEQRES 7 B 132 ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN GLN ALA SEQRES 8 B 132 PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SER VAL SEQRES 9 B 132 SER THR PRO ILE SER GLU VAL TYR GLU SER GLU LYS ASP SEQRES 10 B 132 GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 11 B 132 THR PHE HET GOL A1201 6 HET SO4 A1202 5 HET GOL B1201 6 HET SO4 B1202 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *135(H2 O) HELIX 1 AA1 THR A 1006 ARG A 1011 1 6 HELIX 2 AA2 THR A 1012 HIS A 1027 1 16 HELIX 3 AA3 ASN A 1059 LEU A 1071 1 13 HELIX 4 AA4 PRO A 1094 LYS A 1103 1 10 HELIX 5 AA5 THR B 1006 ARG B 1011 1 6 HELIX 6 AA6 THR B 1012 HIS B 1027 1 16 HELIX 7 AA7 ASN B 1059 GLN B 1072 1 14 HELIX 8 AA8 PRO B 1094 LYS B 1103 1 10 SHEET 1 AA1 4 LYS A1051 PRO A1055 0 SHEET 2 AA1 4 LYS A1030 ARG A1037 -1 N VAL A1033 O PHE A1052 SHEET 3 AA1 4 LEU A1109 ALA A1114 1 O LEU A1109 N ILE A1034 SHEET 4 AA1 4 PHE A1080 VAL A1083 -1 N LEU A1082 O VAL A1112 SHEET 1 AA2 4 LYS B1051 PRO B1055 0 SHEET 2 AA2 4 LYS B1030 ARG B1037 -1 N VAL B1033 O PHE B1052 SHEET 3 AA2 4 LEU B1109 ALA B1114 1 O MET B1111 N ILE B1034 SHEET 4 AA2 4 PHE B1080 VAL B1083 -1 N LEU B1082 O VAL B1112 SITE 1 AC1 5 GLN A1026 HIS A1027 PRO A1028 THR A1029 SITE 2 AC1 5 LYS A1030 SITE 1 AC2 4 ILE A 269 GLY A 270 ARG A1069 ARG A1070 SITE 1 AC3 8 SER A1087 MET A1088 VAL A1089 SER A1090 SITE 2 AC3 8 MET B1088 VAL B1089 SER B1090 GLU B1102 SITE 1 AC4 5 GLN B1026 HIS B1027 PRO B1028 THR B1029 SITE 2 AC4 5 LYS B1030 CRYST1 69.570 69.570 119.620 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014374 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008360 0.00000