HEADER HYDROLASE 08-FEB-17 5UQW TITLE CRYSTAL STRUCTURE OF HUMAN KRAS G12V MUTANT IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-169; COMPND 5 SYNONYM: K-RAS 2, KI-RAS, C-K-RAS, C-KI-RAS; COMPND 6 EC: 3.6.5.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS KRAS, GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.HUANG,A.KAPLAN,B.R.STOCKWELL,L.TONG REVDAT 3 06-MAR-24 5UQW 1 LINK REVDAT 2 27-SEP-17 5UQW 1 REMARK REVDAT 1 22-MAR-17 5UQW 0 JRNL AUTH M.E.WELSCH,A.KAPLAN,J.M.CHAMBERS,M.E.STOKES,P.H.BOS,A.ZASK, JRNL AUTH 2 Y.ZHANG,M.SANCHEZ-MARTIN,M.A.BADGLEY,C.S.HUANG,T.H.TRAN, JRNL AUTH 3 H.AKKIRAJU,L.M.BROWN,R.NANDAKUMAR,S.CREMERS,W.S.YANG,L.TONG, JRNL AUTH 4 K.P.OLIVE,A.FERRANDO,B.R.STOCKWELL JRNL TITL MULTIVALENT SMALL-MOLECULE PAN-RAS INHIBITORS. JRNL REF CELL V. 168 878 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28235199 JRNL DOI 10.1016/J.CELL.2017.02.006 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 49947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.1310 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47000 REMARK 3 B22 (A**2) : -2.47000 REMARK 3 B33 (A**2) : 4.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.010 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.012 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.673 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2671 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2519 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3622 ; 1.676 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5804 ; 0.742 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 6.327 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;38.030 ;24.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;13.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.976 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2967 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 590 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1293 ; 2.193 ; 1.398 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1292 ; 2.161 ; 1.396 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1612 ; 2.932 ; 2.088 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1613 ; 2.932 ; 2.089 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1378 ; 3.620 ; 1.763 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1370 ; 3.625 ; 1.767 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1996 ; 4.884 ; 2.519 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3233 ; 6.042 ;12.686 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3127 ; 5.992 ;12.365 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.532 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 25% W/V PEG3350, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1233 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1241 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1247 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1233 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1234 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 169 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 465 ASP B 69 REMARK 465 GLN B 70 REMARK 465 TYR B 71 REMARK 465 GLU B 168 REMARK 465 LYS B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CD OE1 OE2 REMARK 470 ARG A 97 NE CZ NH1 NH2 REMARK 470 ARG B 41 NE CZ NH1 NH2 REMARK 470 LYS B 165 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1168 O HOH A 1172 1.91 REMARK 500 O HOH B 1116 O HOH B 1158 2.01 REMARK 500 O HOH A 1213 O HOH A 1217 2.03 REMARK 500 O HOH A 1163 O HOH A 1231 2.13 REMARK 500 OE1 GLU A 107 O HOH A 1101 2.17 REMARK 500 OE2 GLU A 49 NH1 ARG B 73 2.17 REMARK 500 OH TYR B 32 OH TYR B 40 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 92 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 105 56.26 36.01 REMARK 500 ASP A 108 63.89 -119.87 REMARK 500 ASP B 33 111.87 -39.08 REMARK 500 ARG B 149 -4.35 82.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1257 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B1241 DISTANCE = 6.59 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A1002 O3B 91.4 REMARK 620 3 HOH A1134 O 84.5 96.0 REMARK 620 4 HOH A1137 O 91.1 86.1 175.2 REMARK 620 5 HOH A1149 O 168.6 92.5 84.5 99.8 REMARK 620 6 HOH A1152 O 90.6 168.9 95.0 83.0 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B1002 O3B 92.6 REMARK 620 3 HOH B1118 O 175.0 87.2 REMARK 620 4 HOH B1127 O 84.8 95.2 90.2 REMARK 620 5 HOH B1128 O 88.1 85.7 96.8 173.0 REMARK 620 6 HOH B1144 O 89.2 170.1 91.8 94.6 84.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5US4 RELATED DB: PDB REMARK 900 RELATED ID: 5USJ RELATED DB: PDB DBREF 5UQW A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 5UQW B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 5UQW MET A -19 UNP P01116 EXPRESSION TAG SEQADV 5UQW GLY A -18 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER A -17 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER A -16 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS A -15 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS A -14 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS A -13 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS A -12 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS A -11 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS A -10 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER A -9 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER A -8 UNP P01116 EXPRESSION TAG SEQADV 5UQW GLY A -7 UNP P01116 EXPRESSION TAG SEQADV 5UQW LEU A -6 UNP P01116 EXPRESSION TAG SEQADV 5UQW VAL A -5 UNP P01116 EXPRESSION TAG SEQADV 5UQW PRO A -4 UNP P01116 EXPRESSION TAG SEQADV 5UQW ARG A -3 UNP P01116 EXPRESSION TAG SEQADV 5UQW GLY A -2 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER A -1 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS A 0 UNP P01116 EXPRESSION TAG SEQADV 5UQW VAL A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 5UQW MET B -19 UNP P01116 EXPRESSION TAG SEQADV 5UQW GLY B -18 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER B -17 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER B -16 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS B -15 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS B -14 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS B -13 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS B -12 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS B -11 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS B -10 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER B -9 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER B -8 UNP P01116 EXPRESSION TAG SEQADV 5UQW GLY B -7 UNP P01116 EXPRESSION TAG SEQADV 5UQW LEU B -6 UNP P01116 EXPRESSION TAG SEQADV 5UQW VAL B -5 UNP P01116 EXPRESSION TAG SEQADV 5UQW PRO B -4 UNP P01116 EXPRESSION TAG SEQADV 5UQW ARG B -3 UNP P01116 EXPRESSION TAG SEQADV 5UQW GLY B -2 UNP P01116 EXPRESSION TAG SEQADV 5UQW SER B -1 UNP P01116 EXPRESSION TAG SEQADV 5UQW HIS B 0 UNP P01116 EXPRESSION TAG SEQADV 5UQW VAL B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 189 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 189 LEU VAL PRO ARG GLY SER HIS MET THR GLU TYR LYS LEU SEQRES 3 A 189 VAL VAL VAL GLY ALA VAL GLY VAL GLY LYS SER ALA LEU SEQRES 4 A 189 THR ILE GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR SEQRES 5 A 189 ASP PRO THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL SEQRES 6 A 189 ILE ASP GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR SEQRES 7 A 189 ALA GLY GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR SEQRES 8 A 189 MET ARG THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE SEQRES 9 A 189 ASN ASN THR LYS SER PHE GLU ASP ILE HIS HIS TYR ARG SEQRES 10 A 189 GLU GLN ILE LYS ARG VAL LYS ASP SER GLU ASP VAL PRO SEQRES 11 A 189 MET VAL LEU VAL GLY ASN LYS CYS ASP LEU PRO SER ARG SEQRES 12 A 189 THR VAL ASP THR LYS GLN ALA GLN ASP LEU ALA ARG SER SEQRES 13 A 189 TYR GLY ILE PRO PHE ILE GLU THR SER ALA LYS THR ARG SEQRES 14 A 189 GLN GLY VAL ASP ASP ALA PHE TYR THR LEU VAL ARG GLU SEQRES 15 A 189 ILE ARG LYS HIS LYS GLU LYS SEQRES 1 B 189 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 189 LEU VAL PRO ARG GLY SER HIS MET THR GLU TYR LYS LEU SEQRES 3 B 189 VAL VAL VAL GLY ALA VAL GLY VAL GLY LYS SER ALA LEU SEQRES 4 B 189 THR ILE GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR SEQRES 5 B 189 ASP PRO THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL SEQRES 6 B 189 ILE ASP GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR SEQRES 7 B 189 ALA GLY GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR SEQRES 8 B 189 MET ARG THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE SEQRES 9 B 189 ASN ASN THR LYS SER PHE GLU ASP ILE HIS HIS TYR ARG SEQRES 10 B 189 GLU GLN ILE LYS ARG VAL LYS ASP SER GLU ASP VAL PRO SEQRES 11 B 189 MET VAL LEU VAL GLY ASN LYS CYS ASP LEU PRO SER ARG SEQRES 12 B 189 THR VAL ASP THR LYS GLN ALA GLN ASP LEU ALA ARG SER SEQRES 13 B 189 TYR GLY ILE PRO PHE ILE GLU THR SER ALA LYS THR ARG SEQRES 14 B 189 GLN GLY VAL ASP ASP ALA PHE TYR THR LEU VAL ARG GLU SEQRES 15 B 189 ILE ARG LYS HIS LYS GLU LYS HET MG A1001 1 HET GDP A1002 28 HET MG B1001 1 HET GDP B1002 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *298(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 ASN B 86 ASP B 92 1 7 HELIX 9 AA9 ASP B 92 LYS B 104 1 13 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 LYS B 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 GLU B 3 GLY B 10 1 N LEU B 6 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A1001 1555 1555 2.13 LINK MG MG A1001 O3B GDP A1002 1555 1555 2.04 LINK MG MG A1001 O HOH A1134 1555 1555 2.07 LINK MG MG A1001 O HOH A1137 1555 1555 2.07 LINK MG MG A1001 O HOH A1149 1555 1555 2.13 LINK MG MG A1001 O HOH A1152 1555 1555 2.12 LINK OG SER B 17 MG MG B1001 1555 1555 2.16 LINK MG MG B1001 O3B GDP B1002 1555 1555 2.05 LINK MG MG B1001 O HOH B1118 1555 1555 2.04 LINK MG MG B1001 O HOH B1127 1555 1555 2.14 LINK MG MG B1001 O HOH B1128 1555 1555 2.13 LINK MG MG B1001 O HOH B1144 1555 1555 2.11 SITE 1 AC1 6 SER A 17 GDP A1002 HOH A1134 HOH A1137 SITE 2 AC1 6 HOH A1149 HOH A1152 SITE 1 AC2 27 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 27 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC2 27 ASP A 30 TYR A 32 ASN A 116 LYS A 117 SITE 4 AC2 27 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 5 AC2 27 LYS A 147 MG A1001 HOH A1121 HOH A1134 SITE 6 AC2 27 HOH A1135 HOH A1137 HOH A1143 HOH A1149 SITE 7 AC2 27 HOH A1167 HOH A1199 HOH A1206 SITE 1 AC3 6 SER B 17 GDP B1002 HOH B1118 HOH B1127 SITE 2 AC3 6 HOH B1128 HOH B1144 SITE 1 AC4 22 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC4 22 SER B 17 ALA B 18 PHE B 28 ASP B 30 SITE 3 AC4 22 ASN B 116 LYS B 117 ASP B 119 LEU B 120 SITE 4 AC4 22 SER B 145 ALA B 146 LYS B 147 MG B1001 SITE 5 AC4 22 HOH B1118 HOH B1127 HOH B1128 HOH B1129 SITE 6 AC4 22 HOH B1176 HOH B1201 CRYST1 84.344 84.344 41.809 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011856 0.006845 0.000000 0.00000 SCALE2 0.000000 0.013690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023918 0.00000