HEADER HYDROLASE/HYDROLASE INHIBITOR 29-DEC-16 5UE4 TITLE PROMMP-9DESFNII COMPLEXED TO JNJ0966 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX METALLOPROTEINASE-9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE, COMPND 5 GELATINASE B,GELB,MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE, COMPND 6 GELATINASE B,GELB; COMPND 7 EC: 3.4.24.35; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP9, CLG4B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROMMP9, ZYMOGEN, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.S.ALEXANDER,J.SPURLINO,C.MILLIGAN REVDAT 3 06-MAR-24 5UE4 1 LINK REVDAT 2 08-NOV-17 5UE4 1 JRNL REVDAT 1 13-SEP-17 5UE4 0 JRNL AUTH R.H.SCANNEVIN,R.ALEXANDER,T.M.HAARLANDER,S.L.BURKE,M.SINGER, JRNL AUTH 2 C.HUO,Y.M.ZHANG,D.MAGUIRE,J.SPURLINO,I.DECKMAN,K.I.CARROLL, JRNL AUTH 3 F.LEWANDOWSKI,E.DEVINE,K.DZORDZORME,B.TOUNGE,C.MILLIGAN, JRNL AUTH 4 S.BAYOUMY,R.WILLIAMS,C.SCHALK-HIHI,K.LEONARD,P.JACKSON, JRNL AUTH 5 M.TODD,L.C.KUO,K.J.RHODES JRNL TITL DISCOVERY OF A HIGHLY SELECTIVE CHEMICAL INHIBITOR OF MATRIX JRNL TITL 2 METALLOPROTEINASE-9 (MMP-9) THAT ALLOSTERICALLY INHIBITS JRNL TITL 3 ZYMOGEN ACTIVATION. JRNL REF J. BIOL. CHEM. V. 292 17963 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28860188 JRNL DOI 10.1074/JBC.M117.806075 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.250 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8K 1% GLYCEROL 0.2 M AMMONIUM REMARK 280 SULFATE 100 MM NACACODYLATE, PH 5.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.91000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.47250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.91000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.47250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.26688 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.18452 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 35 REMARK 465 ARG A 36 REMARK 465 THR A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 465 SER A 64 REMARK 465 LYS A 65 REMARK 465 GLY A 269 REMARK 465 PRO A 270 REMARK 465 LEU B 35 REMARK 465 ARG B 36 REMARK 465 THR B 37 REMARK 465 ASN B 38 REMARK 465 LEU B 39 REMARK 465 THR B 40 REMARK 465 MET B 60 REMARK 465 ARG B 61 REMARK 465 GLY B 62 REMARK 465 GLU B 63 REMARK 465 SER B 64 REMARK 465 LYS B 65 REMARK 465 PHE B 107 REMARK 465 GLN B 108 REMARK 465 THR B 109 REMARK 465 PRO B 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 422 O HOH B 495 2.14 REMARK 500 O HOH A 462 O HOH A 561 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 535 O HOH B 503 2656 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 173 -134.25 42.26 REMARK 500 TYR A 179 75.72 -118.61 REMARK 500 ASP A 185 -160.77 62.06 REMARK 500 SER A 211 -154.07 -147.13 REMARK 500 LEU B 86 60.41 -66.84 REMARK 500 ALA B 173 -130.59 44.48 REMARK 500 TYR B 179 72.87 -118.69 REMARK 500 ASP B 185 -166.67 64.35 REMARK 500 SER B 211 -155.06 -149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 HIS A 226 NE2 113.3 REMARK 620 3 HIS A 230 NE2 116.4 105.5 REMARK 620 4 HIS A 236 NE2 115.5 106.0 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD2 REMARK 620 2 ASP A 206 O 171.0 REMARK 620 3 ASP A 206 OD1 99.9 72.8 REMARK 620 4 GLU A 208 O 83.5 93.8 109.2 REMARK 620 5 HOH A 450 O 88.3 96.5 87.2 162.7 REMARK 620 6 HOH B 510 O 95.2 93.0 161.4 83.3 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 O REMARK 620 2 GLY A 197 O 171.6 REMARK 620 3 GLN A 199 O 94.0 88.6 REMARK 620 4 ASP A 201 OD1 93.0 94.5 99.2 REMARK 620 5 HOH A 417 O 84.1 88.4 80.6 177.1 REMARK 620 6 HOH A 460 O 100.0 75.9 161.4 92.3 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 ASP A 177 OD2 112.3 REMARK 620 3 HIS A 190 NE2 113.7 112.5 REMARK 620 4 HIS A 203 ND1 109.2 92.1 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 GLY A 183 O 89.6 REMARK 620 3 ASP A 185 O 87.5 88.4 REMARK 620 4 LEU A 187 O 86.1 175.4 92.8 REMARK 620 5 ASP A 205 OD2 90.2 87.0 174.9 91.6 REMARK 620 6 GLU A 208 OE2 171.6 93.9 84.9 90.6 97.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 99 SG REMARK 620 2 HIS B 226 NE2 111.7 REMARK 620 3 HIS B 230 NE2 114.6 106.2 REMARK 620 4 HIS B 236 NE2 115.1 105.5 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 165 O REMARK 620 2 GLY B 197 O 165.5 REMARK 620 3 GLN B 199 O 97.8 90.2 REMARK 620 4 ASP B 201 OD1 93.1 97.5 99.5 REMARK 620 5 HOH B 420 O 78.5 91.3 78.5 171.0 REMARK 620 6 HOH B 435 O 93.7 74.9 157.9 98.7 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 175 NE2 REMARK 620 2 ASP B 177 OD2 114.3 REMARK 620 3 HIS B 190 NE2 116.5 112.7 REMARK 620 4 HIS B 203 ND1 105.0 91.8 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 182 OD1 REMARK 620 2 GLY B 183 O 85.7 REMARK 620 3 ASP B 185 O 86.0 87.8 REMARK 620 4 LEU B 187 O 92.4 177.1 94.2 REMARK 620 5 ASP B 205 OD2 90.9 83.3 170.8 94.6 REMARK 620 6 GLU B 208 OE2 166.0 94.6 80.0 87.8 103.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XQ B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UE3 RELATED DB: PDB DBREF 5UE4 A 35 215 UNP P14780 MMP9_HUMAN 35 215 DBREF 5UE4 A 216 270 UNP P14780 MMP9_HUMAN 391 445 DBREF 5UE4 B 35 215 UNP P14780 MMP9_HUMAN 35 215 DBREF 5UE4 B 216 270 UNP P14780 MMP9_HUMAN 391 445 SEQRES 1 A 236 LEU ARG THR ASN LEU THR ASP ARG GLN LEU ALA GLU GLU SEQRES 2 A 236 TYR LEU TYR ARG TYR GLY TYR THR ARG VAL ALA GLU MET SEQRES 3 A 236 ARG GLY GLU SER LYS SER LEU GLY PRO ALA LEU LEU LEU SEQRES 4 A 236 LEU GLN LYS GLN LEU SER LEU PRO GLU THR GLY GLU LEU SEQRES 5 A 236 ASP SER ALA THR LEU LYS ALA MET ARG THR PRO ARG CYS SEQRES 6 A 236 GLY VAL PRO ASP LEU GLY ARG PHE GLN THR PHE GLU GLY SEQRES 7 A 236 ASP LEU LYS TRP HIS HIS HIS ASN ILE THR TYR TRP ILE SEQRES 8 A 236 GLN ASN TYR SER GLU ASP LEU PRO ARG ALA VAL ILE ASP SEQRES 9 A 236 ASP ALA PHE ALA ARG ALA PHE ALA LEU TRP SER ALA VAL SEQRES 10 A 236 THR PRO LEU THR PHE THR ARG VAL TYR SER ARG ASP ALA SEQRES 11 A 236 ASP ILE VAL ILE GLN PHE GLY VAL ALA GLU HIS GLY ASP SEQRES 12 A 236 GLY TYR PRO PHE ASP GLY LYS ASP GLY LEU LEU ALA HIS SEQRES 13 A 236 ALA PHE PRO PRO GLY PRO GLY ILE GLN GLY ASP ALA HIS SEQRES 14 A 236 PHE ASP ASP ASP GLU LEU TRP SER LEU GLY LYS GLY GLN SEQRES 15 A 236 GLY TYR SER LEU PHE LEU VAL ALA ALA HIS GLU PHE GLY SEQRES 16 A 236 HIS ALA LEU GLY LEU ASP HIS SER SER VAL PRO GLU ALA SEQRES 17 A 236 LEU MET TYR PRO MET TYR ARG PHE THR GLU GLY PRO PRO SEQRES 18 A 236 LEU HIS LYS ASP ASP VAL ASN GLY ILE ARG HIS LEU TYR SEQRES 19 A 236 GLY PRO SEQRES 1 B 236 LEU ARG THR ASN LEU THR ASP ARG GLN LEU ALA GLU GLU SEQRES 2 B 236 TYR LEU TYR ARG TYR GLY TYR THR ARG VAL ALA GLU MET SEQRES 3 B 236 ARG GLY GLU SER LYS SER LEU GLY PRO ALA LEU LEU LEU SEQRES 4 B 236 LEU GLN LYS GLN LEU SER LEU PRO GLU THR GLY GLU LEU SEQRES 5 B 236 ASP SER ALA THR LEU LYS ALA MET ARG THR PRO ARG CYS SEQRES 6 B 236 GLY VAL PRO ASP LEU GLY ARG PHE GLN THR PHE GLU GLY SEQRES 7 B 236 ASP LEU LYS TRP HIS HIS HIS ASN ILE THR TYR TRP ILE SEQRES 8 B 236 GLN ASN TYR SER GLU ASP LEU PRO ARG ALA VAL ILE ASP SEQRES 9 B 236 ASP ALA PHE ALA ARG ALA PHE ALA LEU TRP SER ALA VAL SEQRES 10 B 236 THR PRO LEU THR PHE THR ARG VAL TYR SER ARG ASP ALA SEQRES 11 B 236 ASP ILE VAL ILE GLN PHE GLY VAL ALA GLU HIS GLY ASP SEQRES 12 B 236 GLY TYR PRO PHE ASP GLY LYS ASP GLY LEU LEU ALA HIS SEQRES 13 B 236 ALA PHE PRO PRO GLY PRO GLY ILE GLN GLY ASP ALA HIS SEQRES 14 B 236 PHE ASP ASP ASP GLU LEU TRP SER LEU GLY LYS GLY GLN SEQRES 15 B 236 GLY TYR SER LEU PHE LEU VAL ALA ALA HIS GLU PHE GLY SEQRES 16 B 236 HIS ALA LEU GLY LEU ASP HIS SER SER VAL PRO GLU ALA SEQRES 17 B 236 LEU MET TYR PRO MET TYR ARG PHE THR GLU GLY PRO PRO SEQRES 18 B 236 LEU HIS LYS ASP ASP VAL ASN GLY ILE ARG HIS LEU TYR SEQRES 19 B 236 GLY PRO HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET SO4 A 306 5 HET ZN B 301 1 HET ZN B 302 1 HET CA B 303 1 HET CA B 304 1 HET SO4 B 305 5 HET SO4 B 306 5 HET 5XQ B 307 24 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM 5XQ ~{N}-[5-[2-[(2-METHOXYPHENYL)AMINO]-1,3-THIAZOL-4-YL]- HETNAM 2 5XQ 4-METHYL-1,3-THIAZOL-2-YL]ETHANAMIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 5(CA 2+) FORMUL 8 SO4 3(O4 S 2-) FORMUL 15 5XQ C16 H16 N4 O2 S2 FORMUL 16 HOH *316(H2 O) HELIX 1 AA1 THR A 40 TYR A 52 1 13 HELIX 2 AA2 GLY A 53 ARG A 61 1 9 HELIX 3 AA3 LEU A 67 SER A 79 1 13 HELIX 4 AA4 ASP A 87 THR A 96 1 10 HELIX 5 AA5 PRO A 133 THR A 152 1 20 HELIX 6 AA6 LEU A 220 LEU A 232 1 13 HELIX 7 AA7 HIS A 257 HIS A 266 1 10 HELIX 8 AA8 ARG B 42 TYR B 52 1 11 HELIX 9 AA9 GLY B 53 GLU B 59 1 7 HELIX 10 AB1 LEU B 67 LEU B 78 1 12 HELIX 11 AB2 ASP B 87 THR B 96 1 10 HELIX 12 AB3 PRO B 133 ALA B 150 1 18 HELIX 13 AB4 LEU B 220 LEU B 232 1 13 HELIX 14 AB5 HIS B 257 GLY B 269 1 13 SHEET 1 AA1 5 THR A 155 VAL A 159 0 SHEET 2 AA1 5 ASN A 120 ILE A 125 1 N TYR A 123 O VAL A 159 SHEET 3 AA1 5 ILE A 166 GLY A 171 1 O ILE A 168 N TRP A 124 SHEET 4 AA1 5 ALA A 202 ASP A 205 1 O PHE A 204 N GLN A 169 SHEET 5 AA1 5 ALA A 189 ALA A 191 -1 N HIS A 190 O HIS A 203 SHEET 1 AA2 2 TRP A 210 SER A 211 0 SHEET 2 AA2 2 TYR A 218 SER A 219 1 O TYR A 218 N SER A 211 SHEET 1 AA3 5 THR B 155 ARG B 158 0 SHEET 2 AA3 5 ASN B 120 ILE B 125 1 N ILE B 121 O THR B 155 SHEET 3 AA3 5 ILE B 166 GLY B 171 1 O ILE B 168 N TRP B 124 SHEET 4 AA3 5 ALA B 202 ASP B 205 1 O PHE B 204 N GLN B 169 SHEET 5 AA3 5 ALA B 189 ALA B 191 -1 N HIS B 190 O HIS B 203 SHEET 1 AA4 2 TRP B 210 SER B 211 0 SHEET 2 AA4 2 TYR B 218 SER B 219 1 O TYR B 218 N SER B 211 LINK SG CYS A 99 ZN ZN A 301 1555 1555 2.29 LINK OD2 ASP A 131 CA CA A 305 1555 1555 2.40 LINK O ASP A 165 CA CA A 304 1555 1555 2.45 LINK NE2 HIS A 175 ZN ZN A 302 1555 1555 2.15 LINK OD2 ASP A 177 ZN ZN A 302 1555 1555 2.04 LINK OD1 ASP A 182 CA CA A 303 1555 1555 2.39 LINK O GLY A 183 CA CA A 303 1555 1555 2.32 LINK O ASP A 185 CA CA A 303 1555 1555 2.37 LINK O LEU A 187 CA CA A 303 1555 1555 2.36 LINK NE2 HIS A 190 ZN ZN A 302 1555 1555 2.12 LINK O GLY A 197 CA CA A 304 1555 1555 2.53 LINK O GLN A 199 CA CA A 304 1555 1555 2.43 LINK OD1 ASP A 201 CA CA A 304 1555 1555 2.61 LINK ND1 HIS A 203 ZN ZN A 302 1555 1555 2.11 LINK OD2 ASP A 205 CA CA A 303 1555 1555 2.40 LINK O ASP A 206 CA CA A 305 1555 1555 2.58 LINK OD1 ASP A 206 CA CA A 305 1555 1555 2.58 LINK OE2 GLU A 208 CA CA A 303 1555 1555 2.35 LINK O GLU A 208 CA CA A 305 1555 1555 2.35 LINK NE2 HIS A 226 ZN ZN A 301 1555 1555 2.04 LINK NE2 HIS A 230 ZN ZN A 301 1555 1555 2.02 LINK NE2 HIS A 236 ZN ZN A 301 1555 1555 2.04 LINK CA CA A 304 O HOH A 417 1555 1555 2.61 LINK CA CA A 304 O HOH A 460 1555 1555 2.46 LINK CA CA A 305 O HOH A 450 1555 1555 2.56 LINK CA CA A 305 O HOH B 510 1555 2646 2.55 LINK SG CYS B 99 ZN ZN B 301 1555 1555 2.26 LINK O ASP B 165 CA CA B 304 1555 1555 2.47 LINK NE2 HIS B 175 ZN ZN B 302 1555 1555 2.08 LINK OD2 ASP B 177 ZN ZN B 302 1555 1555 2.04 LINK OD1 ASP B 182 CA CA B 303 1555 1555 2.42 LINK O GLY B 183 CA CA B 303 1555 1555 2.38 LINK O ASP B 185 CA CA B 303 1555 1555 2.45 LINK O LEU B 187 CA CA B 303 1555 1555 2.28 LINK NE2 HIS B 190 ZN ZN B 302 1555 1555 2.07 LINK O GLY B 197 CA CA B 304 1555 1555 2.56 LINK O GLN B 199 CA CA B 304 1555 1555 2.44 LINK OD1 ASP B 201 CA CA B 304 1555 1555 2.58 LINK ND1 HIS B 203 ZN ZN B 302 1555 1555 2.17 LINK OD2 ASP B 205 CA CA B 303 1555 1555 2.36 LINK OE2 GLU B 208 CA CA B 303 1555 1555 2.34 LINK NE2 HIS B 226 ZN ZN B 301 1555 1555 2.14 LINK NE2 HIS B 230 ZN ZN B 301 1555 1555 2.02 LINK NE2 HIS B 236 ZN ZN B 301 1555 1555 2.00 LINK CA CA B 304 O HOH B 420 1555 1555 2.64 LINK CA CA B 304 O HOH B 435 1555 1555 2.49 SITE 1 AC1 4 CYS A 99 HIS A 226 HIS A 230 HIS A 236 SITE 1 AC2 4 HIS A 175 ASP A 177 HIS A 190 HIS A 203 SITE 1 AC3 6 ASP A 182 GLY A 183 ASP A 185 LEU A 187 SITE 2 AC3 6 ASP A 205 GLU A 208 SITE 1 AC4 6 ASP A 165 GLY A 197 GLN A 199 ASP A 201 SITE 2 AC4 6 HOH A 417 HOH A 460 SITE 1 AC5 5 ASP A 131 ASP A 206 GLU A 208 HOH A 450 SITE 2 AC5 5 HOH B 510 SITE 1 AC6 4 TRP A 116 HIS A 117 HIS A 118 HOH A 438 SITE 1 AC7 4 CYS B 99 HIS B 226 HIS B 230 HIS B 236 SITE 1 AC8 4 HIS B 175 ASP B 177 HIS B 190 HIS B 203 SITE 1 AC9 6 ASP B 182 GLY B 183 ASP B 185 LEU B 187 SITE 2 AC9 6 ASP B 205 GLU B 208 SITE 1 AD1 6 ASP B 165 GLY B 197 GLN B 199 ASP B 201 SITE 2 AD1 6 HOH B 420 HOH B 435 SITE 1 AD2 6 TRP B 116 HIS B 117 HIS B 118 HOH B 414 SITE 2 AD2 6 HOH B 424 HOH B 493 SITE 1 AD3 7 GLY A 105 ARG A 106 HOH A 512 SER B 211 SITE 2 AD3 7 GLY B 215 GLN B 216 GLY B 217 SITE 1 AD4 13 VAL B 101 ARG B 106 PHE B 110 LEU B 114 SITE 2 AD4 13 TYR B 179 HIS B 190 ALA B 191 PHE B 192 SITE 3 AD4 13 PRO B 193 HIS B 230 GLY B 233 LEU B 234 SITE 4 AD4 13 HOH B 479 CRYST1 89.820 72.945 77.537 90.00 106.91 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011133 0.000000 0.003384 0.00000 SCALE2 0.000000 0.013709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013480 0.00000