HEADER PEPTIDE BINDING PROTEIN 06-JAN-16 5HF4 TITLE THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 (H372A MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ-3 DOMAIN (UNP RESIDUES 302-402); COMPND 5 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90,SAP90; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DLG4, DLGH4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS PDZ, GLGF, DHR, ADHESION, SYNAPSE, SYNAPTIC DENSITY, PEPTIDE-BINDING KEYWDS 2 DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.I.WHITE,A.S.RAMAN,R.RANGANATHAN REVDAT 2 27-SEP-23 5HF4 1 REMARK REVDAT 1 11-JAN-17 5HF4 0 JRNL AUTH K.I.WHITE,A.S.RAMAN,R.RANGANATHAN JRNL TITL THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 (H372A JRNL TITL 2 MUTANT) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2026 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9260 - 3.6395 1.00 1412 157 0.1638 0.1808 REMARK 3 2 3.6395 - 2.8890 1.00 1310 147 0.1713 0.2058 REMARK 3 3 2.8890 - 2.5239 1.00 1278 141 0.1860 0.2297 REMARK 3 4 2.5239 - 2.2932 1.00 1269 141 0.1847 0.2431 REMARK 3 5 2.2932 - 2.1288 1.00 1264 140 0.1770 0.2416 REMARK 3 6 2.1288 - 2.0033 1.00 1242 139 0.1927 0.2068 REMARK 3 7 2.0033 - 1.9030 1.00 1259 139 0.2045 0.2847 REMARK 3 8 1.9030 - 1.8201 1.00 1238 138 0.2265 0.2911 REMARK 3 9 1.8201 - 1.7501 0.97 1206 137 0.2576 0.2870 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1071 REMARK 3 ANGLE : 0.928 1459 REMARK 3 CHIRALITY : 0.047 155 REMARK 3 PLANARITY : 0.004 206 REMARK 3 DIHEDRAL : 13.841 420 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 298:304) REMARK 3 ORIGIN FOR THE GROUP (A): 60.3951 66.3300 47.7709 REMARK 3 T TENSOR REMARK 3 T11: 0.5107 T22: 0.5918 REMARK 3 T33: 0.7834 T12: -0.0840 REMARK 3 T13: 0.0843 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 6.4644 L22: 6.3937 REMARK 3 L33: 6.2814 L12: 0.8377 REMARK 3 L13: 2.8961 L23: 1.7636 REMARK 3 S TENSOR REMARK 3 S11: 0.1981 S12: -0.7613 S13: -0.5778 REMARK 3 S21: 0.8089 S22: 0.0297 S23: -0.2990 REMARK 3 S31: 0.0289 S32: 0.4890 S33: -0.1884 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 305:321) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4423 67.2517 34.7661 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1263 REMARK 3 T33: 0.1900 T12: -0.0513 REMARK 3 T13: -0.0014 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 2.9052 L22: 4.2966 REMARK 3 L33: 5.1059 L12: -0.5118 REMARK 3 L13: 0.0514 L23: -1.3380 REMARK 3 S TENSOR REMARK 3 S11: -0.3113 S12: 0.0873 S13: 0.2559 REMARK 3 S21: 0.3679 S22: 0.0220 S23: 0.3240 REMARK 3 S31: -0.7478 S32: 0.2191 S33: -0.0802 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 322:352) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0755 60.8776 28.7387 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0981 REMARK 3 T33: 0.1971 T12: -0.0308 REMARK 3 T13: -0.0294 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.0481 L22: 3.3091 REMARK 3 L33: 3.4282 L12: 0.7436 REMARK 3 L13: -0.5601 L23: 0.0988 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.0623 S13: -0.1337 REMARK 3 S21: -0.2136 S22: -0.0612 S23: 0.5274 REMARK 3 S31: 0.0643 S32: -0.1111 S33: -0.0865 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 353:415) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0833 57.2411 33.5911 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.1052 REMARK 3 T33: 0.1966 T12: -0.0315 REMARK 3 T13: 0.0229 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 1.4935 L22: 3.4125 REMARK 3 L33: 2.6130 L12: -0.3057 REMARK 3 L13: -0.9821 L23: 0.8031 REMARK 3 S TENSOR REMARK 3 S11: -0.2236 S12: 0.0226 S13: -0.0455 REMARK 3 S21: 0.2279 S22: 0.2247 S23: 0.5587 REMARK 3 S31: 0.2055 S32: -0.1321 S33: 0.0583 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792062 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 39.916 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.9170 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.286 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION CONTAINED 0.95 M REMARK 280 SODIUM CITRATE, PH 7.0. EQUAL AMOUNTS (1.5 MICROLITERS) OF REMARK 280 PROTEIN (9 MG/ML) AND RESERVOIR SOLUTION WERE MIXED AND REMARK 280 EQUILLIBRATED AGAINST 500 MICROLITERS OF CRYSTALLIZATION BUFFER., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.62700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.62700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.62700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.62700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.62700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.62700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.62700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.62700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.62700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.62700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.62700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.62700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.62700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.62700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.62700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.62700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.62700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.62700 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 66.94050 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.31350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.31350 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 66.94050 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 66.94050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.94050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.31350 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.31350 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 66.94050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.31350 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 66.94050 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.31350 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 66.94050 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.31350 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.31350 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.31350 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 66.94050 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.31350 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 66.94050 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 66.94050 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 66.94050 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.31350 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.31350 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 66.94050 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 66.94050 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.31350 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.31350 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.31350 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.31350 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 66.94050 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.31350 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 66.94050 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.31350 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 66.94050 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 66.94050 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 66.94050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 683 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 318 O LEU A 379 1.55 REMARK 500 O HOH A 710 O HOH A 711 1.97 REMARK 500 O HOH A 651 O HOH A 681 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 652 O HOH A 652 22564 2.16 REMARK 500 O HOH A 629 O HOH A 671 22564 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 320 -136.99 -95.73 REMARK 500 THR A 321 -14.92 -143.69 REMARK 500 THR A 321 -55.64 63.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 6.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BFE RELATED DB: PDB REMARK 900 RELATED ID: 5HDY RELATED DB: PDB REMARK 900 RELATED ID: 5HEB RELATED DB: PDB REMARK 900 RELATED ID: 5HED RELATED DB: PDB REMARK 900 RELATED ID: 5HET RELATED DB: PDB REMARK 900 RELATED ID: 5HEY RELATED DB: PDB REMARK 900 RELATED ID: 5HF1 RELATED DB: PDB REMARK 900 RELATED ID: 5HFB RELATED DB: PDB REMARK 900 RELATED ID: 5HFC RELATED DB: PDB REMARK 900 RELATED ID: 5FHD RELATED DB: PDB REMARK 900 RELATED ID: 5HFE RELATED DB: PDB REMARK 900 RELATED ID: 5HFF RELATED DB: PDB DBREF 5HF4 A 302 402 UNP P31016 DLG4_RAT 302 402 SEQADV 5HF4 GLY A 297 UNP P31016 EXPRESSION TAG SEQADV 5HF4 SER A 298 UNP P31016 EXPRESSION TAG SEQADV 5HF4 PRO A 299 UNP P31016 EXPRESSION TAG SEQADV 5HF4 GLU A 300 UNP P31016 EXPRESSION TAG SEQADV 5HF4 PHE A 301 UNP P31016 EXPRESSION TAG SEQADV 5HF4 ALA A 372 UNP P31016 HIS 372 ENGINEERED MUTATION SEQADV 5HF4 ASN A 403 UNP P31016 EXPRESSION TAG SEQADV 5HF4 SER A 404 UNP P31016 EXPRESSION TAG SEQADV 5HF4 ARG A 405 UNP P31016 EXPRESSION TAG SEQADV 5HF4 VAL A 406 UNP P31016 EXPRESSION TAG SEQADV 5HF4 ASP A 407 UNP P31016 EXPRESSION TAG SEQADV 5HF4 SER A 408 UNP P31016 EXPRESSION TAG SEQADV 5HF4 SER A 409 UNP P31016 EXPRESSION TAG SEQADV 5HF4 GLY A 410 UNP P31016 EXPRESSION TAG SEQADV 5HF4 ARG A 411 UNP P31016 EXPRESSION TAG SEQADV 5HF4 ILE A 412 UNP P31016 EXPRESSION TAG SEQADV 5HF4 VAL A 413 UNP P31016 EXPRESSION TAG SEQADV 5HF4 THR A 414 UNP P31016 EXPRESSION TAG SEQADV 5HF4 ASP A 415 UNP P31016 EXPRESSION TAG SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER ALA GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASP SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASP HET GOL A 501 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *111(H2 O) HELIX 1 AA1 PHE A 301 GLU A 305 5 5 HELIX 2 AA2 GLY A 345 GLY A 351 1 7 HELIX 3 AA3 SER A 371 ASN A 381 1 11 HELIX 4 AA4 LYS A 393 ARG A 399 1 7 SHEET 1 AA1 4 ARG A 312 HIS A 317 0 SHEET 2 AA1 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA1 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA2 2 PHE A 325 GLY A 329 0 SHEET 2 AA2 2 ILE A 336 ILE A 341 -1 O PHE A 337 N VAL A 328 SHEET 1 AA3 2 SER A 404 VAL A 406 0 SHEET 2 AA3 2 ILE A 412 THR A 414 -1 O VAL A 413 N ARG A 405 SITE 1 AC1 5 LEU A 323 PHE A 325 HOH A 605 HOH A 636 SITE 2 AC1 5 HOH A 644 CRYST1 89.254 89.254 89.254 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011204 0.00000