HEADER SIGNALING PROTEIN 29-JUN-16 5GJE TITLE THREE-DIMENSIONAL RECONSTRUCTION OF HUMAN LRP6 ECTODOMAIN COMPLEXED TITLE 2 WITH DKK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-630; COMPND 5 SYNONYM: LRP-6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 631-1246; COMPND 11 SYNONYM: LRP-6; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DICKKOPF-RELATED PROTEIN 1; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: HDKK-1,SK; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRP6; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: LRP6; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: DKK1, UNQ492/PRO1008; SOURCE 21 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS WNT SIGNALING, WNT CO-RECEPTOR, LRP6, GLYCOPROTEIN, ANTAGONIST, DKK1, KEYWDS 2 CONFORMATIONAL CHANGE, SIGNALING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR K.MATOBA,E.MIHARA,K.TAMURA-KAWAKAMI,H.HIRAI,S.THOMPSON,K.IWASAKI, AUTHOR 2 J.TAKAGI REVDAT 2 29-JUL-20 5GJE 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 18-JAN-17 5GJE 0 JRNL AUTH K.MATOBA,E.MIHARA,K.TAMURA-KAWAKAMI,N.MIYAZAKI,S.MAEDA, JRNL AUTH 2 H.HIRAI,S.THOMPSON,K.IWASAKI,J.TAKAGI JRNL TITL CONFORMATIONAL FREEDOM OF THE LRP6 ECTODOMAIN IS REGULATED JRNL TITL 2 BY N-GLYCOSYLATION AND THE BINDING OF THE WNT ANTAGONIST JRNL TITL 3 DKK1 JRNL REF CELL REP V. 18 32 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28052259 JRNL DOI 10.1016/J.CELREP.2016.12.017 REMARK 2 REMARK 2 RESOLUTION. 21.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SPIDER & WEB, EM-MENU, SPIDER, CHIMERA, REMARK 3 SPIDER, SPIDER, SPIDER, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4DG6 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 21.00 REMARK 3 NUMBER OF PARTICLES : 5390 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5GJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300000773. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN LRP6 ECTODOMAIN COMPLEXED REMARK 245 WITH FULL LENGTH OF DKK1; LRP6 REMARK 245 ECTODOMAIN; HUMAN DICKKOPF- REMARK 245 RELATED PROTEIN1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : HUMAN DKK1 FUSED WITH HUMAN REMARK 245 GROWTH HORMONE AT THE N-TERMINAL (HGH-DKK1) WAS CO-EXPRESSED REMARK 245 WITH LRP6EC IN THE HEK293S GNT1- CELLS.; N-TERMINAL HUMAN GROWTH REMARK 245 HORMONE FUSED FULL LENGTH OF DKK1 REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : HITACHI H-9500SD REMARK 245 DETECTOR TYPE : TVIPS TEMCAM-F224 (2K X 2K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.80 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 80000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : LAB6 REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1006 REMARK 465 VAL B 1007 REMARK 465 PRO B 1008 REMARK 465 SER B 1009 REMARK 465 GLN B 1010 REMARK 465 ASN B 1011 REMARK 465 LEU B 1012 REMARK 465 GLY B 1244 REMARK 465 GLU B 1245 REMARK 465 PRO B 1246 REMARK 465 ASP C 250 REMARK 465 HIS C 251 REMARK 465 HIS C 252 REMARK 465 GLN C 253 REMARK 465 ALA C 254 REMARK 465 SER C 255 REMARK 465 ASN C 256 REMARK 465 SER C 257 REMARK 465 SER C 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O7 NAG F 2 O HOH A 801 1.31 REMARK 500 ND2 ASN B 926 C2 NAG B 1306 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 24.85 -158.02 REMARK 500 ARG A 9 -54.30 72.79 REMARK 500 ASP A 16 -39.14 176.74 REMARK 500 ALA A 17 -123.96 55.26 REMARK 500 ASP A 33 67.38 -160.50 REMARK 500 ALA A 35 -57.13 -120.22 REMARK 500 ASP A 38 -179.97 -174.97 REMARK 500 LYS A 63 105.70 -59.87 REMARK 500 SER A 66 105.71 -44.60 REMARK 500 VAL A 72 37.61 -143.79 REMARK 500 SER A 73 130.74 -177.00 REMARK 500 LEU A 76 -57.53 -124.91 REMARK 500 PRO A 78 97.23 -65.75 REMARK 500 LEU A 86 -77.53 -96.25 REMARK 500 LEU A 105 15.82 -66.49 REMARK 500 LEU A 113 -73.34 -76.41 REMARK 500 TRP A 115 -11.17 -160.19 REMARK 500 ARG A 122 -92.92 -125.18 REMARK 500 LYS A 143 148.81 -173.52 REMARK 500 ILE A 157 -62.75 -92.40 REMARK 500 ASN A 166 -166.34 -103.24 REMARK 500 ALA A 180 -152.92 -108.43 REMARK 500 ASP A 181 124.61 -173.10 REMARK 500 LYS A 183 -63.70 -121.90 REMARK 500 HIS A 188 -159.12 -122.03 REMARK 500 LYS A 189 133.16 177.78 REMARK 500 PHE A 214 105.20 -167.13 REMARK 500 GLU A 215 76.72 57.45 REMARK 500 ASP A 216 -7.17 74.83 REMARK 500 LEU A 239 70.26 -66.39 REMARK 500 SER A 244 108.70 -166.52 REMARK 500 PHE A 247 82.66 -67.99 REMARK 500 SER A 248 64.70 69.34 REMARK 500 MET A 250 -113.66 -106.64 REMARK 500 ALA A 263 -170.38 -173.03 REMARK 500 ASN A 271 -39.23 65.63 REMARK 500 CYS A 274 -121.03 -142.32 REMARK 500 HIS A 276 -62.59 -120.82 REMARK 500 PRO A 292 177.91 -58.28 REMARK 500 LYS A 302 -23.47 73.17 REMARK 500 THR A 309 -60.53 -92.75 REMARK 500 LEU A 311 133.03 -172.70 REMARK 500 PHE A 330 -80.09 55.64 REMARK 500 THR A 331 1.24 -56.67 REMARK 500 LEU A 335 -162.80 -124.29 REMARK 500 GLN A 336 -179.41 -179.66 REMARK 500 LEU A 337 165.67 95.17 REMARK 500 ARG A 341 -65.09 -91.72 REMARK 500 ILE A 344 -70.05 -120.10 REMARK 500 PHE A 369 49.52 -98.52 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 15 ASP A 16 135.88 REMARK 500 GLY A 374 SER A 375 -148.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9501 RELATED DB: EMDB DBREF 5GJE A 1 611 UNP O75581 LRP6_HUMAN 20 630 DBREF 5GJE B 631 1246 UNP O75581 LRP6_HUMAN 631 1246 DBREF 5GJE C 182 266 UNP O94907 DKK1_HUMAN 182 266 SEQADV 5GJE ILE B 1062 UNP O75581 VAL 1062 ENGINEERED MUTATION SEQRES 1 A 611 ALA PRO LEU LEU LEU TYR ALA ASN ARG ARG ASP LEU ARG SEQRES 2 A 611 LEU VAL ASP ALA THR ASN GLY LYS GLU ASN ALA THR ILE SEQRES 3 A 611 VAL VAL GLY GLY LEU GLU ASP ALA ALA ALA VAL ASP PHE SEQRES 4 A 611 VAL PHE SER HIS GLY LEU ILE TYR TRP SER ASP VAL SER SEQRES 5 A 611 GLU GLU ALA ILE LYS ARG THR GLU PHE ASN LYS THR GLU SEQRES 6 A 611 SER VAL GLN ASN VAL VAL VAL SER GLY LEU LEU SER PRO SEQRES 7 A 611 ASP GLY LEU ALA CYS ASP TRP LEU GLY GLU LYS LEU TYR SEQRES 8 A 611 TRP THR ASP SER GLU THR ASN ARG ILE GLU VAL SER ASN SEQRES 9 A 611 LEU ASP GLY SER LEU ARG LYS VAL LEU PHE TRP GLN GLU SEQRES 10 A 611 LEU ASP GLN PRO ARG ALA ILE ALA LEU ASP PRO SER SER SEQRES 11 A 611 GLY PHE MET TYR TRP THR ASP TRP GLY GLU VAL PRO LYS SEQRES 12 A 611 ILE GLU ARG ALA GLY MET ASP GLY SER SER ARG PHE ILE SEQRES 13 A 611 ILE ILE ASN SER GLU ILE TYR TRP PRO ASN GLY LEU THR SEQRES 14 A 611 LEU ASP TYR GLU GLU GLN LYS LEU TYR TRP ALA ASP ALA SEQRES 15 A 611 LYS LEU ASN PHE ILE HIS LYS SER ASN LEU ASP GLY THR SEQRES 16 A 611 ASN ARG GLN ALA VAL VAL LYS GLY SER LEU PRO HIS PRO SEQRES 17 A 611 PHE ALA LEU THR LEU PHE GLU ASP ILE LEU TYR TRP THR SEQRES 18 A 611 ASP TRP SER THR HIS SER ILE LEU ALA CYS ASN LYS TYR SEQRES 19 A 611 THR GLY GLU GLY LEU ARG GLU ILE HIS SER ASP ILE PHE SEQRES 20 A 611 SER PRO MET ASP ILE HIS ALA PHE SER GLN GLN ARG GLN SEQRES 21 A 611 PRO ASN ALA THR ASN PRO CYS GLY ILE ASP ASN GLY GLY SEQRES 22 A 611 CYS SER HIS LEU CYS LEU MET SER PRO VAL LYS PRO PHE SEQRES 23 A 611 TYR GLN CYS ALA CYS PRO THR GLY VAL LYS LEU LEU GLU SEQRES 24 A 611 ASN GLY LYS THR CYS LYS ASP GLY ALA THR GLU LEU LEU SEQRES 25 A 611 LEU LEU ALA ARG ARG THR ASP LEU ARG ARG ILE SER LEU SEQRES 26 A 611 ASP THR PRO ASP PHE THR ASP ILE VAL LEU GLN LEU GLU SEQRES 27 A 611 ASP ILE ARG HIS ALA ILE ALA ILE ASP TYR ASP PRO VAL SEQRES 28 A 611 GLU GLY TYR ILE TYR TRP THR ASP ASP GLU VAL ARG ALA SEQRES 29 A 611 ILE ARG ARG SER PHE ILE ASP GLY SER GLY SER GLN PHE SEQRES 30 A 611 VAL VAL THR ALA GLN ILE ALA HIS PRO ASP GLY ILE ALA SEQRES 31 A 611 VAL ASP TRP VAL ALA ARG ASN LEU TYR TRP THR ASP THR SEQRES 32 A 611 GLY THR ASP ARG ILE GLU VAL THR ARG LEU ASN GLY THR SEQRES 33 A 611 MET ARG LYS ILE LEU ILE SER GLU ASP LEU GLU GLU PRO SEQRES 34 A 611 ARG ALA ILE VAL LEU ASP PRO MET VAL GLY TYR MET TYR SEQRES 35 A 611 TRP THR ASP TRP GLY GLU ILE PRO LYS ILE GLU ARG ALA SEQRES 36 A 611 ALA LEU ASP GLY SER ASP ARG VAL VAL LEU VAL ASN THR SEQRES 37 A 611 SER LEU GLY TRP PRO ASN GLY LEU ALA LEU ASP TYR ASP SEQRES 38 A 611 GLU GLY LYS ILE TYR TRP GLY ASP ALA LYS THR ASP LYS SEQRES 39 A 611 ILE GLU VAL MET ASN THR ASP GLY THR GLY ARG ARG VAL SEQRES 40 A 611 LEU VAL GLU ASP LYS ILE PRO HIS ILE PHE GLY PHE THR SEQRES 41 A 611 LEU LEU GLY ASP TYR VAL TYR TRP THR ASP TRP GLN ARG SEQRES 42 A 611 ARG SER ILE GLU ARG VAL HIS LYS ARG SER ALA GLU ARG SEQRES 43 A 611 GLU VAL ILE ILE ASP GLN LEU PRO ASP LEU MET GLY LEU SEQRES 44 A 611 LYS ALA THR ASN VAL HIS ARG VAL ILE GLY SER ASN PRO SEQRES 45 A 611 CYS ALA GLU GLU ASN GLY GLY CYS SER HIS LEU CYS LEU SEQRES 46 A 611 TYR ARG PRO GLN GLY LEU ARG CYS ALA CYS PRO ILE GLY SEQRES 47 A 611 PHE GLU LEU ILE SER ASP MET LYS THR CYS ILE VAL PRO SEQRES 1 B 616 GLU ALA PHE LEU LEU PHE SER ARG ARG ALA ASP ILE ARG SEQRES 2 B 616 ARG ILE SER LEU GLU THR ASN ASN ASN ASN VAL ALA ILE SEQRES 3 B 616 PRO LEU THR GLY VAL LYS GLU ALA SER ALA LEU ASP PHE SEQRES 4 B 616 ASP VAL THR ASP ASN ARG ILE TYR TRP THR ASP ILE SER SEQRES 5 B 616 LEU LYS THR ILE SER ARG ALA PHE MET ASN GLY SER ALA SEQRES 6 B 616 LEU GLU HIS VAL VAL GLU PHE GLY LEU ASP TYR PRO GLU SEQRES 7 B 616 GLY MET ALA VAL ASP TRP LEU GLY LYS ASN LEU TYR TRP SEQRES 8 B 616 ALA ASP THR GLY THR ASN ARG ILE GLU VAL SER LYS LEU SEQRES 9 B 616 ASP GLY GLN HIS ARG GLN VAL LEU VAL TRP LYS ASP LEU SEQRES 10 B 616 ASP SER PRO ARG ALA LEU ALA LEU ASP PRO ALA GLU GLY SEQRES 11 B 616 PHE MET TYR TRP THR GLU TRP GLY GLY LYS PRO LYS ILE SEQRES 12 B 616 ASP ARG ALA ALA MET ASP GLY SER GLU ARG THR THR LEU SEQRES 13 B 616 VAL PRO ASN VAL GLY ARG ALA ASN GLY LEU THR ILE ASP SEQRES 14 B 616 TYR ALA LYS ARG ARG LEU TYR TRP THR ASP LEU ASP THR SEQRES 15 B 616 ASN LEU ILE GLU SER SER ASN MET LEU GLY LEU ASN ARG SEQRES 16 B 616 GLU VAL ILE ALA ASP ASP LEU PRO HIS PRO PHE GLY LEU SEQRES 17 B 616 THR GLN TYR GLN ASP TYR ILE TYR TRP THR ASP TRP SER SEQRES 18 B 616 ARG ARG SER ILE GLU ARG ALA ASN LYS THR SER GLY GLN SEQRES 19 B 616 ASN ARG THR ILE ILE GLN GLY HIS LEU ASP TYR VAL MET SEQRES 20 B 616 ASP ILE LEU VAL PHE HIS SER SER ARG GLN SER GLY TRP SEQRES 21 B 616 ASN GLU CYS ALA SER SER ASN GLY HIS CYS SER HIS LEU SEQRES 22 B 616 CYS LEU ALA VAL PRO VAL GLY GLY PHE VAL CYS GLY CYS SEQRES 23 B 616 PRO ALA HIS TYR SER LEU ASN ALA ASP ASN ARG THR CYS SEQRES 24 B 616 SER ALA PRO THR THR PHE LEU LEU PHE SER GLN LYS SER SEQRES 25 B 616 ALA ILE ASN ARG MET VAL ILE ASP GLU GLN GLN SER PRO SEQRES 26 B 616 ASP ILE ILE LEU PRO ILE HIS SER LEU ARG ASN VAL ARG SEQRES 27 B 616 ALA ILE ASP TYR ASP PRO LEU ASP LYS GLN LEU TYR TRP SEQRES 28 B 616 ILE ASP SER ARG GLN ASN MET ILE ARG LYS ALA GLN GLU SEQRES 29 B 616 ASP GLY SER GLN GLY PHE THR VAL VAL VAL SER SER VAL SEQRES 30 B 616 PRO SER GLN ASN LEU GLU ILE GLN PRO TYR ASP LEU SER SEQRES 31 B 616 ILE ASP ILE TYR SER ARG TYR ILE TYR TRP THR CYS GLU SEQRES 32 B 616 ALA THR ASN VAL ILE ASN VAL THR ARG LEU ASP GLY ARG SEQRES 33 B 616 SER VAL GLY VAL VAL LEU LYS GLY GLU GLN ASP ARG PRO SEQRES 34 B 616 ARG ALA ILE VAL VAL ASN PRO GLU LYS GLY TYR MET TYR SEQRES 35 B 616 PHE THR ASN LEU GLN GLU ARG SER PRO LYS ILE GLU ARG SEQRES 36 B 616 ALA ALA LEU ASP GLY THR GLU ARG GLU VAL LEU PHE PHE SEQRES 37 B 616 SER GLY LEU SER LYS PRO ILE ALA LEU ALA LEU ASP SER SEQRES 38 B 616 ARG LEU GLY LYS LEU PHE TRP ALA ASP SER ASP LEU ARG SEQRES 39 B 616 ARG ILE GLU SER SER ASP LEU SER GLY ALA ASN ARG ILE SEQRES 40 B 616 VAL LEU GLU ASP SER ASN ILE LEU GLN PRO VAL GLY LEU SEQRES 41 B 616 THR VAL PHE GLU ASN TRP LEU TYR TRP ILE ASP LYS GLN SEQRES 42 B 616 GLN GLN MET ILE GLU LYS ILE ASP MET THR GLY ARG GLU SEQRES 43 B 616 GLY ARG THR LYS VAL GLN ALA ARG ILE ALA GLN LEU SER SEQRES 44 B 616 ASP ILE HIS ALA VAL LYS GLU LEU ASN LEU GLN GLU TYR SEQRES 45 B 616 ARG GLN HIS PRO CYS ALA GLN ASP ASN GLY GLY CYS SER SEQRES 46 B 616 HIS ILE CYS LEU VAL LYS GLY ASP GLY THR THR ARG CYS SEQRES 47 B 616 SER CYS PRO MET HIS LEU VAL LEU LEU GLN ASP GLU LEU SEQRES 48 B 616 SER CYS GLY GLU PRO SEQRES 1 C 85 LYS GLY GLN GLU GLY SER VAL CYS LEU ARG SER SER ASP SEQRES 2 C 85 CYS ALA SER GLY LEU CYS CYS ALA ARG HIS PHE TRP SER SEQRES 3 C 85 LYS ILE CYS LYS PRO VAL LEU LYS GLU GLY GLN VAL CYS SEQRES 4 C 85 THR LYS HIS ARG ARG LYS GLY SER HIS GLY LEU GLU ILE SEQRES 5 C 85 PHE GLN ARG CYS TYR CYS GLY GLU GLY LEU SER CYS ARG SEQRES 6 C 85 ILE GLN LYS ASP HIS HIS GLN ALA SER ASN SER SER ARG SEQRES 7 C 85 LEU HIS THR CYS GLN ARG HIS HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET NAG H 1 14 HET NAG H 2 14 HET PO4 A 707 5 HET PO4 A 708 5 HET NAG B1304 14 HET NAG B1305 14 HET NAG B1306 14 HET GOL B1309 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 13(C8 H15 N O6) FORMUL 7 FUC C6 H12 O5 FORMUL 9 PO4 2(O4 P 3-) FORMUL 14 GOL C3 H8 O3 FORMUL 15 HOH *13(H2 O) HELIX 1 AA1 SER A 256 GLN A 260 5 5 HELIX 2 AA2 ASP A 479 GLY A 483 5 5 HELIX 3 AA3 ASN A 571 CYS A 580 5 10 HELIX 4 AA4 HIS B 883 GLN B 887 5 5 HELIX 5 AA5 ASN B 891 CYS B 900 5 10 HELIX 6 AA6 ASN B 1198 GLN B 1204 1 7 HELIX 7 AA7 GLN B 1209 CYS B 1214 5 6 HELIX 8 AA8 ARG C 191 CYS C 195 5 5 HELIX 9 AA9 ARG C 225 GLU C 232 1 8 SHEET 1 AA1 3 LEU A 12 VAL A 15 0 SHEET 2 AA1 3 LEU A 4 ALA A 7 -1 N LEU A 4 O VAL A 15 SHEET 3 AA1 3 ILE A 252 ALA A 254 -1 O HIS A 253 N LEU A 5 SHEET 1 AA2 4 ALA A 34 VAL A 40 0 SHEET 2 AA2 4 LEU A 45 ASP A 50 -1 O TYR A 47 N ASP A 38 SHEET 3 AA2 4 ALA A 55 GLU A 60 -1 O LYS A 57 N TRP A 48 SHEET 4 AA2 4 VAL A 67 VAL A 71 -1 O VAL A 70 N ILE A 56 SHEET 1 AA3 4 GLY A 80 ASP A 84 0 SHEET 2 AA3 4 LYS A 89 ASP A 94 -1 O LYS A 89 N ASP A 84 SHEET 3 AA3 4 ARG A 99 ASN A 104 -1 O SER A 103 N LEU A 90 SHEET 4 AA3 4 LYS A 111 PHE A 114 -1 O LYS A 111 N VAL A 102 SHEET 1 AA4 4 PRO A 121 ASP A 127 0 SHEET 2 AA4 4 PHE A 132 ASP A 137 -1 O TYR A 134 N ALA A 125 SHEET 3 AA4 4 LYS A 143 GLY A 148 -1 O ALA A 147 N MET A 133 SHEET 4 AA4 4 PHE A 155 ILE A 158 -1 O PHE A 155 N ARG A 146 SHEET 1 AA5 4 PRO A 165 ASP A 171 0 SHEET 2 AA5 4 LYS A 176 ASP A 181 -1 O LYS A 176 N ASP A 171 SHEET 3 AA5 4 HIS A 188 ASN A 191 -1 O HIS A 188 N TRP A 179 SHEET 4 AA5 4 GLN A 198 ALA A 199 -1 O GLN A 198 N LYS A 189 SHEET 1 AA6 3 LEU A 211 LEU A 213 0 SHEET 2 AA6 3 ILE A 217 ASP A 222 -1 O TYR A 219 N THR A 212 SHEET 3 AA6 3 SER A 227 ASN A 232 -1 O LEU A 229 N TRP A 220 SHEET 1 AA7 2 LEU A 277 MET A 280 0 SHEET 2 AA7 2 TYR A 287 ALA A 290 -1 O GLN A 288 N LEU A 279 SHEET 1 AA8 4 LEU A 335 GLN A 336 0 SHEET 2 AA8 4 LEU A 320 SER A 324 -1 N LEU A 320 O GLN A 336 SHEET 3 AA8 4 GLU A 310 ARG A 316 -1 N LEU A 314 O ARG A 321 SHEET 4 AA8 4 LEU A 556 ASN A 563 -1 O MET A 557 N ALA A 315 SHEET 1 AA9 4 ALA A 343 ASP A 349 0 SHEET 2 AA9 4 TYR A 354 ASP A 359 -1 O TYR A 356 N ASP A 347 SHEET 3 AA9 4 ALA A 364 SER A 368 -1 O SER A 368 N ILE A 355 SHEET 4 AA9 4 GLN A 376 VAL A 379 -1 O GLN A 376 N ARG A 367 SHEET 1 AB1 4 GLY A 388 ASP A 392 0 SHEET 2 AB1 4 ASN A 397 ASP A 402 -1 O TYR A 399 N ALA A 390 SHEET 3 AB1 4 ARG A 407 ARG A 412 -1 O THR A 411 N LEU A 398 SHEET 4 AB1 4 LYS A 419 SER A 423 -1 O ILE A 422 N ILE A 408 SHEET 1 AB2 4 GLU A 428 ASP A 435 0 SHEET 2 AB2 4 TYR A 440 TRP A 446 -1 O TYR A 442 N VAL A 433 SHEET 3 AB2 4 LYS A 451 ALA A 456 -1 O ALA A 455 N MET A 441 SHEET 4 AB2 4 VAL A 463 VAL A 466 -1 O VAL A 463 N ARG A 454 SHEET 1 AB3 2 PRO A 473 LEU A 476 0 SHEET 2 AB3 2 TRP A 487 ASP A 489 -1 O GLY A 488 N ASN A 474 SHEET 1 AB4 2 LYS A 494 VAL A 497 0 SHEET 2 AB4 2 ARG A 506 GLU A 510 -1 O LEU A 508 N ILE A 495 SHEET 1 AB5 4 PHE A 519 LEU A 522 0 SHEET 2 AB5 4 TYR A 525 THR A 529 -1 O TYR A 527 N THR A 520 SHEET 3 AB5 4 ILE A 536 HIS A 540 -1 O VAL A 539 N VAL A 526 SHEET 4 AB5 4 VAL A 548 ILE A 550 -1 O ILE A 550 N ILE A 536 SHEET 1 AB6 2 LEU A 583 LEU A 585 0 SHEET 2 AB6 2 ARG A 592 ALA A 594 -1 O ALA A 594 N LEU A 583 SHEET 1 AB7 2 GLU A 600 LEU A 601 0 SHEET 2 AB7 2 CYS A 608 ILE A 609 -1 O ILE A 609 N GLU A 600 SHEET 1 AB8 4 ASN B 653 ALA B 655 0 SHEET 2 AB8 4 ASP B 641 ILE B 645 -1 N ARG B 644 O VAL B 654 SHEET 3 AB8 4 PHE B 633 ARG B 638 -1 N LEU B 634 O ILE B 645 SHEET 4 AB8 4 ILE B 879 PHE B 882 -1 O PHE B 882 N PHE B 633 SHEET 1 AB9 4 ALA B 664 ASP B 670 0 SHEET 2 AB9 4 ARG B 675 ASP B 680 -1 O THR B 679 N SER B 665 SHEET 3 AB9 4 THR B 685 PHE B 690 -1 O SER B 687 N TRP B 678 SHEET 4 AB9 4 GLU B 697 VAL B 700 -1 O VAL B 699 N ILE B 686 SHEET 1 AC1 4 GLY B 709 ASP B 713 0 SHEET 2 AC1 4 ASN B 718 ASP B 723 -1 O ALA B 722 N GLY B 709 SHEET 3 AC1 4 ARG B 728 LYS B 733 -1 O SER B 732 N LEU B 719 SHEET 4 AC1 4 GLN B 740 VAL B 743 -1 O LEU B 742 N ILE B 729 SHEET 1 AC2 4 PRO B 750 LEU B 755 0 SHEET 2 AC2 4 PHE B 761 GLU B 766 -1 O TYR B 763 N ALA B 754 SHEET 3 AC2 4 LYS B 772 ALA B 777 -1 O ALA B 776 N MET B 762 SHEET 4 AC2 4 THR B 784 VAL B 787 -1 O THR B 784 N ARG B 775 SHEET 1 AC3 4 ALA B 793 ASP B 799 0 SHEET 2 AC3 4 ARG B 804 ASP B 809 -1 O TYR B 806 N THR B 797 SHEET 3 AC3 4 LEU B 814 ASN B 819 -1 O SER B 818 N LEU B 805 SHEET 4 AC3 4 GLU B 826 ALA B 829 -1 O ALA B 829 N ILE B 815 SHEET 1 AC4 4 PRO B 835 TYR B 841 0 SHEET 2 AC4 4 TYR B 844 ASP B 849 -1 O TYR B 846 N THR B 839 SHEET 3 AC4 4 SER B 854 ASN B 859 -1 O GLU B 856 N TRP B 847 SHEET 4 AC4 4 THR B 867 GLY B 871 -1 O ILE B 869 N ILE B 855 SHEET 1 AC5 2 LEU B 903 VAL B 907 0 SHEET 2 AC5 2 GLY B 911 GLY B 915 -1 O VAL B 913 N LEU B 905 SHEET 1 AC6 2 SER B 921 LEU B 922 0 SHEET 2 AC6 2 CYS B 929 SER B 930 -1 O SER B 930 N SER B 921 SHEET 1 AC7 4 ILE B 957 ILE B 958 0 SHEET 2 AC7 4 ILE B 944 MET B 947 -1 N ARG B 946 O ILE B 957 SHEET 3 AC7 4 PHE B 935 GLN B 940 -1 N PHE B 938 O ASN B 945 SHEET 4 AC7 4 LEU B1188 VAL B1194 -1 O HIS B1192 N LEU B 937 SHEET 1 AC8 4 ASP B 971 ASP B 973 0 SHEET 2 AC8 4 GLN B 978 ASP B 983 -1 O GLN B 978 N ASP B 973 SHEET 3 AC8 4 MET B 988 ALA B 992 -1 O ALA B 992 N LEU B 979 SHEET 4 AC8 4 PHE B1000 VAL B1003 -1 O VAL B1002 N ILE B 989 SHEET 1 AC9 4 PRO B1016 ASP B1022 0 SHEET 2 AC9 4 TYR B1027 CYS B1032 -1 O TYR B1027 N ASP B1022 SHEET 3 AC9 4 VAL B1037 ARG B1042 -1 O ASN B1039 N TRP B1030 SHEET 4 AC9 4 SER B1047 LYS B1053 -1 O VAL B1051 N ILE B1038 SHEET 1 AD1 4 PRO B1059 VAL B1064 0 SHEET 2 AD1 4 TYR B1070 GLN B1077 -1 O TYR B1072 N VAL B1063 SHEET 3 AD1 4 SER B1080 ALA B1087 -1 O LYS B1082 N ASN B1075 SHEET 4 AD1 4 GLU B1094 PHE B1097 -1 O PHE B1097 N ILE B1083 SHEET 1 AD2 4 PRO B1104 ASP B1110 0 SHEET 2 AD2 4 LYS B1115 ASP B1120 -1 O PHE B1117 N ALA B1108 SHEET 3 AD2 4 ARG B1125 ASP B1130 -1 O SER B1129 N LEU B1116 SHEET 4 AD2 4 ILE B1137 GLU B1140 -1 O LEU B1139 N ILE B1126 SHEET 1 AD3 4 PRO B1147 PHE B1153 0 SHEET 2 AD3 4 TRP B1156 ASP B1161 -1 O TRP B1156 N PHE B1153 SHEET 3 AD3 4 MET B1166 ASP B1171 -1 O ILE B1170 N LEU B1157 SHEET 4 AD3 4 THR B1179 GLN B1182 -1 O VAL B1181 N ILE B1167 SHEET 1 AD4 2 ILE B1217 VAL B1220 0 SHEET 2 AD4 2 THR B1226 SER B1229 -1 O SER B1229 N ILE B1217 SHEET 1 AD5 2 LEU C 199 HIS C 204 0 SHEET 2 AD5 2 SER C 207 PRO C 212 -1 O LYS C 211 N CYS C 200 SHEET 1 AD6 2 LEU C 243 ILE C 247 0 SHEET 2 AD6 2 HIS C 261 ARG C 265 -1 O GLN C 264 N SER C 244 SSBOND 1 CYS A 274 CYS A 289 1555 1555 2.83 SSBOND 2 CYS A 291 CYS A 304 1555 1555 2.68 SSBOND 3 CYS A 573 CYS A 584 1555 1555 2.60 SSBOND 4 CYS A 580 CYS A 593 1555 1555 2.63 SSBOND 5 CYS A 595 CYS A 608 1555 1555 2.64 SSBOND 6 CYS B 893 CYS B 904 1555 1555 2.03 SSBOND 7 CYS B 900 CYS B 914 1555 1555 2.03 SSBOND 8 CYS B 916 CYS B 929 1555 1555 2.04 SSBOND 9 CYS B 1207 CYS B 1218 1555 1555 2.03 SSBOND 10 CYS B 1214 CYS B 1228 1555 1555 2.03 SSBOND 11 CYS B 1230 CYS B 1243 1555 1555 2.03 SSBOND 12 CYS C 189 CYS C 201 1555 1555 2.04 SSBOND 13 CYS C 195 CYS C 210 1555 1555 2.03 SSBOND 14 CYS C 200 CYS C 237 1555 1555 2.03 SSBOND 15 CYS C 220 CYS C 245 1555 1555 2.04 SSBOND 16 CYS C 239 CYS C 263 1555 1555 2.04 LINK ND2 ASN A 262 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 414 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN A 467 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN B 692 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 859 C1 NAG B1304 1555 1555 1.44 LINK ND2 ASN B 865 C1 NAG B1305 1555 1555 1.44 LINK ND2 ASN B 926 C1 NAG B1306 1555 1555 1.44 LINK ND2 ASN B1039 C1 NAG H 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.40 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000