HEADER TRANSFERASE/TRANSFERASE INHIBITOR 15-DEC-15 5FD2 TITLE B-RAF WILD-TYPE KINASE DOMAIN IN COMPLEX WITH A PURINYLPYRIDINYLAMINO- TITLE 2 BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 433-726; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 6 HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: KINASE DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BTI-TN-5B1-4; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC DUAL KEYWDS PHOSPHOTRANSFERASE, INHIBITOR, MELANOMA, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.A.WHITTINGTON,L.F.EPSTEIN REVDAT 2 06-MAR-24 5FD2 1 REMARK REVDAT 1 04-MAY-16 5FD2 0 JRNL AUTH L.LIU,M.R.LEE,J.L.KIM,D.A.WHITTINGTON,H.BREGMAN,Z.HUA, JRNL AUTH 2 R.T.LEWIS,M.W.MARTIN,N.NISHIMURA,M.POTASHMAN,K.YANG,S.YI, JRNL AUTH 3 K.R.VAIDA,L.F.EPSTEIN,C.BABIJ,M.FERNANDO,J.CARNAHAN, JRNL AUTH 4 M.H.NORMAN JRNL TITL PURINYLPYRIDINYLAMINO-BASED DFG-IN/ ALPHA C-HELIX-OUT B-RAF JRNL TITL 2 INHIBITORS: APPLYING MUTANT VERSUS WILD-TYPE B-RAF JRNL TITL 3 SELECTIVITY INDICES FOR COMPOUND PROFILING. JRNL REF BIOORG.MED.CHEM. V. 24 2215 2016 JRNL REFN ESSN 1464-3391 JRNL PMID 27085672 JRNL DOI 10.1016/J.BMC.2016.03.055 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 15408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 952 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3978 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.424 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4131 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2821 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5584 ; 1.200 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6847 ; 0.833 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 5.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;32.659 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 737 ;16.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.476 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4493 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 835 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 1 4 REMARK 3 1 B 1 B 1 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 41 ; 0.160 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 41 ;23.240 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 448 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6779 26.7259 2.6504 REMARK 3 T TENSOR REMARK 3 T11: 0.0882 T22: 0.0879 REMARK 3 T33: 0.3367 T12: -0.0223 REMARK 3 T13: 0.0073 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 2.6886 L22: 4.9886 REMARK 3 L33: 3.9956 L12: -3.1713 REMARK 3 L13: 0.2338 L23: -2.2139 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0263 S13: -0.5198 REMARK 3 S21: -0.1222 S22: 0.0020 S23: 0.3286 REMARK 3 S31: 0.2016 S32: 0.0489 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 534 A 720 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5209 28.4278 -19.9378 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.1638 REMARK 3 T33: 0.1411 T12: -0.0946 REMARK 3 T13: -0.0303 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.7949 L22: 4.0515 REMARK 3 L33: 4.9893 L12: 2.3208 REMARK 3 L13: 0.2363 L23: 0.4701 REMARK 3 S TENSOR REMARK 3 S11: -0.1256 S12: 0.2734 S13: -0.0468 REMARK 3 S21: -0.3050 S22: 0.2215 S23: 0.2102 REMARK 3 S31: 0.1120 S32: -0.0197 S33: -0.0959 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 449 B 533 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0894 46.0918 -63.8600 REMARK 3 T TENSOR REMARK 3 T11: 2.4221 T22: 1.4325 REMARK 3 T33: 1.0807 T12: 0.0033 REMARK 3 T13: -0.9866 T23: 0.2349 REMARK 3 L TENSOR REMARK 3 L11: 12.4001 L22: 0.8982 REMARK 3 L33: 3.6884 L12: -1.0825 REMARK 3 L13: -2.1095 L23: -1.2934 REMARK 3 S TENSOR REMARK 3 S11: 1.8744 S12: 1.0171 S13: -0.6609 REMARK 3 S21: -0.9626 S22: -0.6498 S23: 0.3451 REMARK 3 S31: 1.2275 S32: 0.0669 S33: -1.2246 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 534 B 720 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6990 49.4796 -38.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.5820 T22: 0.4621 REMARK 3 T33: 0.2433 T12: -0.1956 REMARK 3 T13: -0.1809 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 5.9052 L22: 3.9855 REMARK 3 L33: 3.8213 L12: 2.0072 REMARK 3 L13: 1.8788 L23: -0.3011 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: 0.0407 S13: 0.1066 REMARK 3 S21: -0.6055 S22: 0.1382 S23: 0.3614 REMARK 3 S31: -0.0615 S32: -0.2943 S33: -0.1661 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5FD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TACSIMATE, TRIS, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.62650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 122.62650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.89500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.04400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.89500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.04400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 122.62650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.89500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.04400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.62650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.89500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.04400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 GLU A 433 REMARK 465 ASP A 434 REMARK 465 ARG A 435 REMARK 465 ASN A 436 REMARK 465 ARG A 437 REMARK 465 MET A 438 REMARK 465 LYS A 439 REMARK 465 THR A 440 REMARK 465 LEU A 441 REMARK 465 GLY A 442 REMARK 465 ARG A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 LEU A 721 REMARK 465 PRO A 722 REMARK 465 LYS A 723 REMARK 465 ILE A 724 REMARK 465 HIS A 725 REMARK 465 ARG A 726 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 GLU B 433 REMARK 465 ASP B 434 REMARK 465 ARG B 435 REMARK 465 ASN B 436 REMARK 465 ARG B 437 REMARK 465 MET B 438 REMARK 465 LYS B 439 REMARK 465 THR B 440 REMARK 465 LEU B 441 REMARK 465 GLY B 442 REMARK 465 ARG B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 ASP B 448 REMARK 465 VAL B 459 REMARK 465 GLY B 460 REMARK 465 GLN B 461 REMARK 465 ARG B 462 REMARK 465 ILE B 463 REMARK 465 GLY B 464 REMARK 465 SER B 465 REMARK 465 GLY B 466 REMARK 465 SER B 467 REMARK 465 PHE B 468 REMARK 465 ASN B 486 REMARK 465 VAL B 487 REMARK 465 THR B 488 REMARK 465 ALA B 489 REMARK 465 PRO B 490 REMARK 465 THR B 491 REMARK 465 PRO B 492 REMARK 465 GLN B 493 REMARK 465 GLN B 494 REMARK 465 LEU B 495 REMARK 465 GLN B 496 REMARK 465 LEU B 597 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 VAL B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 LEU B 721 REMARK 465 PRO B 722 REMARK 465 LYS B 723 REMARK 465 ILE B 724 REMARK 465 HIS B 725 REMARK 465 ARG B 726 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 483 CG CD CE NZ REMARK 470 LYS B 507 CG CD CE NZ REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 LYS B 547 CG CD CE NZ REMARK 470 LYS B 630 CG CD CE NZ REMARK 470 LYS B 687 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 575 -6.15 69.83 REMARK 500 ASP A 576 32.94 -158.28 REMARK 500 LEU A 588 14.99 95.51 REMARK 500 MET A 627 93.54 -54.71 REMARK 500 ILE B 457 -66.85 -134.45 REMARK 500 THR B 521 51.53 -158.59 REMARK 500 LYS B 522 87.31 -165.67 REMARK 500 PRO B 523 -96.40 -69.84 REMARK 500 GLU B 545 80.84 46.94 REMARK 500 ARG B 575 -12.71 64.99 REMARK 500 ASP B 576 51.48 -157.76 REMARK 500 ASP B 587 15.08 54.88 REMARK 500 LEU B 588 -61.62 -128.12 REMARK 500 ASP B 594 33.77 88.44 REMARK 500 MET B 627 96.53 -14.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XJ A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XJ B 801 DBREF 5FD2 A 433 726 UNP P15056 BRAF_HUMAN 433 726 DBREF 5FD2 B 433 726 UNP P15056 BRAF_HUMAN 433 726 SEQADV 5FD2 HIS A 427 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS A 428 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS A 429 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS A 430 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS A 431 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS A 432 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS B 427 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS B 428 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS B 429 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS B 430 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS B 431 UNP P15056 EXPRESSION TAG SEQADV 5FD2 HIS B 432 UNP P15056 EXPRESSION TAG SEQRES 1 A 300 HIS HIS HIS HIS HIS HIS GLU ASP ARG ASN ARG MET LYS SEQRES 2 A 300 THR LEU GLY ARG ARG ASP SER SER ASP ASP TRP GLU ILE SEQRES 3 A 300 PRO ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER SEQRES 4 A 300 GLY SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY SEQRES 5 A 300 ASP VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR SEQRES 6 A 300 PRO GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL SEQRES 7 A 300 LEU ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET SEQRES 8 A 300 GLY TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN SEQRES 9 A 300 TRP CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ILE SEQRES 10 A 300 ILE GLU THR LYS PHE GLU MET ILE LYS LEU ILE ASP ILE SEQRES 11 A 300 ALA ARG GLN THR ALA GLN GLY MET ASP TYR LEU HIS ALA SEQRES 12 A 300 LYS SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE SEQRES 13 A 300 PHE LEU HIS GLU ASP LEU THR VAL LYS ILE GLY ASP PHE SEQRES 14 A 300 GLY LEU ALA THR VAL LYS SER ARG TRP SER GLY SER HIS SEQRES 15 A 300 GLN PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA SEQRES 16 A 300 PRO GLU VAL ILE ARG MET GLN ASP LYS ASN PRO TYR SER SEQRES 17 A 300 PHE GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR SEQRES 18 A 300 GLU LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN SEQRES 19 A 300 ASN ARG ASP GLN ILE ILE PHE MET VAL GLY ARG GLY TYR SEQRES 20 A 300 LEU SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO SEQRES 21 A 300 LYS ALA MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS SEQRES 22 A 300 LYS ARG ASP GLU ARG PRO LEU PHE PRO GLN ILE LEU ALA SEQRES 23 A 300 SER ILE GLU LEU LEU ALA ARG SER LEU PRO LYS ILE HIS SEQRES 24 A 300 ARG SEQRES 1 B 300 HIS HIS HIS HIS HIS HIS GLU ASP ARG ASN ARG MET LYS SEQRES 2 B 300 THR LEU GLY ARG ARG ASP SER SER ASP ASP TRP GLU ILE SEQRES 3 B 300 PRO ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER SEQRES 4 B 300 GLY SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY SEQRES 5 B 300 ASP VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR SEQRES 6 B 300 PRO GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL SEQRES 7 B 300 LEU ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET SEQRES 8 B 300 GLY TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN SEQRES 9 B 300 TRP CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ILE SEQRES 10 B 300 ILE GLU THR LYS PHE GLU MET ILE LYS LEU ILE ASP ILE SEQRES 11 B 300 ALA ARG GLN THR ALA GLN GLY MET ASP TYR LEU HIS ALA SEQRES 12 B 300 LYS SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE SEQRES 13 B 300 PHE LEU HIS GLU ASP LEU THR VAL LYS ILE GLY ASP PHE SEQRES 14 B 300 GLY LEU ALA THR VAL LYS SER ARG TRP SER GLY SER HIS SEQRES 15 B 300 GLN PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA SEQRES 16 B 300 PRO GLU VAL ILE ARG MET GLN ASP LYS ASN PRO TYR SER SEQRES 17 B 300 PHE GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR SEQRES 18 B 300 GLU LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN SEQRES 19 B 300 ASN ARG ASP GLN ILE ILE PHE MET VAL GLY ARG GLY TYR SEQRES 20 B 300 LEU SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO SEQRES 21 B 300 LYS ALA MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS SEQRES 22 B 300 LYS ARG ASP GLU ARG PRO LEU PHE PRO GLN ILE LEU ALA SEQRES 23 B 300 SER ILE GLU LEU LEU ALA ARG SER LEU PRO LYS ILE HIS SEQRES 24 B 300 ARG HET 5XJ A 801 31 HET 5XJ B 801 31 HETNAM 5XJ 6-[2-[[3-(DIMETHYLSULFAMOYLAMINO)-2,6-BIS(FLUORANYL) HETNAM 2 5XJ PHENYL]AMINO]PYRIDIN-3-YL]-7~{H}-PURINE FORMUL 3 5XJ 2(C18 H16 F2 N8 O2 S) FORMUL 5 HOH *32(H2 O) HELIX 1 AA1 THR A 491 ARG A 506 1 16 HELIX 2 AA2 LEU A 537 ILE A 543 1 7 HELIX 3 AA3 GLU A 549 LYS A 570 1 22 HELIX 4 AA4 LEU A 597 TRP A 604 1 8 HELIX 5 AA5 SER A 616 MET A 620 5 5 HELIX 6 AA6 ALA A 621 ARG A 626 1 6 HELIX 7 AA7 SER A 634 GLY A 652 1 19 HELIX 8 AA8 ASN A 661 ARG A 671 1 11 HELIX 9 AA9 ASP A 677 VAL A 681 5 5 HELIX 10 AB1 PRO A 686 LEU A 697 1 12 HELIX 11 AB2 LYS A 700 ARG A 704 5 5 HELIX 12 AB3 LEU A 706 ALA A 718 1 13 HELIX 13 AB4 PHE B 498 LYS B 507 1 10 HELIX 14 AB5 LEU B 537 HIS B 542 1 6 HELIX 15 AB6 GLU B 549 LYS B 570 1 22 HELIX 16 AB7 LYS B 578 ASN B 580 5 3 HELIX 17 AB8 SER B 616 MET B 620 5 5 HELIX 18 AB9 ALA B 621 ARG B 626 1 6 HELIX 19 AC1 SER B 634 GLY B 652 1 19 HELIX 20 AC2 ASN B 661 ARG B 671 1 11 HELIX 21 AC3 ASP B 677 VAL B 681 5 5 HELIX 22 AC4 PRO B 686 LYS B 698 1 13 HELIX 23 AC5 LYS B 700 ARG B 704 5 5 HELIX 24 AC6 LEU B 706 ARG B 719 1 14 SHEET 1 AA1 5 THR A 458 GLY A 464 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O VAL A 471 N ILE A 463 SHEET 3 AA1 5 ASP A 479 LEU A 485 -1 O MET A 484 N THR A 470 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O THR A 529 N ALA A 481 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 AA2 3 GLY A 534 SER A 536 0 SHEET 2 AA2 3 ILE A 582 HIS A 585 -1 O LEU A 584 N SER A 535 SHEET 3 AA2 3 VAL A 590 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 4 TYR B 472 LYS B 475 0 SHEET 2 AA3 4 ASP B 479 MET B 484 -1 O VAL B 480 N GLY B 474 SHEET 3 AA3 4 LEU B 525 GLN B 530 -1 O ILE B 527 N LYS B 483 SHEET 4 AA3 4 PHE B 516 THR B 521 -1 N GLY B 518 O VAL B 528 SHEET 1 AA4 3 GLY B 534 SER B 536 0 SHEET 2 AA4 3 ILE B 582 HIS B 585 -1 O LEU B 584 N SER B 535 SHEET 3 AA4 3 THR B 589 ILE B 592 -1 O THR B 589 N HIS B 585 CISPEP 1 LYS A 522 PRO A 523 0 3.14 CISPEP 2 LYS B 522 PRO B 523 0 9.06 SITE 1 AC1 15 VAL A 471 ALA A 481 LYS A 483 LEU A 505 SITE 2 AC1 15 LEU A 514 THR A 529 GLN A 530 TRP A 531 SITE 3 AC1 15 CYS A 532 PHE A 583 ASP A 594 PHE A 595 SITE 4 AC1 15 GLY A 596 HOH A 902 HOH A 909 SITE 1 AC2 11 VAL B 471 ALA B 481 LYS B 483 LEU B 514 SITE 2 AC2 11 GLN B 530 TRP B 531 CYS B 532 GLY B 593 SITE 3 AC2 11 ASP B 594 PHE B 595 GLY B 596 CRYST1 73.790 80.088 245.253 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004077 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.148307 -0.877989 -0.455126 34.58801 1 MTRIX2 2 -0.928681 -0.281838 0.241078 64.27910 1 MTRIX3 2 -0.339936 0.386914 -0.857171 -67.78677 1