HEADER TRANSFERASE 14-DEC-15 5FBV TITLE PI4KB IN COMPLEX WITH RAB11 AND THE MI364 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4-KINASE BETA,PHOSPHATIDYLINOSITOL 4- COMPND 3 KINASE BETA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 128-422, 523-799; COMPND 6 SYNONYM: PTDINS 4-KINASE BETA,NPIK,PI4K92,PI4KB,PTDINS 4-KINASE BETA, COMPND 7 NPIK,PI4K92,PI4KB; COMPND 8 EC: 2.7.1.67,2.7.1.67; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: RAB-11,YL8; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PI4KB, PIK4CB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAB11A, RAB11; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, KINASE, LIPID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.CHALUPSKA,I.MEJDROVA,R.NENCKA,E.BOURA REVDAT 2 10-JAN-24 5FBV 1 COMPND HETNAM REVDAT 1 28-DEC-16 5FBV 0 JRNL AUTH D.CHALUPSKA,I.MEJDROVA,R.NENCKA,E.BOURA JRNL TITL PI4KB IN COMPLEX WITH RAB11 AND THE MI364 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9704 - 5.6154 0.99 2959 156 0.1987 0.2233 REMARK 3 2 5.6154 - 4.4582 1.00 2802 148 0.2252 0.2787 REMARK 3 3 4.4582 - 3.8949 0.99 2784 148 0.2290 0.3081 REMARK 3 4 3.8949 - 3.5390 0.98 2716 142 0.2957 0.3302 REMARK 3 5 3.5390 - 3.2854 0.97 2680 140 0.3806 0.4471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.600 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5176 REMARK 3 ANGLE : 1.543 7010 REMARK 3 CHIRALITY : 0.072 796 REMARK 3 PLANARITY : 0.011 878 REMARK 3 DIHEDRAL : 15.175 1890 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14745 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.280 REMARK 200 RESOLUTION RANGE LOW (A) : 46.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.440 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4D0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M AMONIUM SULFATE, 0.1M MEW PH=6, REMARK 280 15% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.26800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.07050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.39100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.07050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.26800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.39100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 222 REMARK 465 MET A 223 REMARK 465 HIS A 224 REMARK 465 ILE A 225 REMARK 465 SER A 226 REMARK 465 THR A 227 REMARK 465 GLN A 228 REMARK 465 ARG A 229 REMARK 465 HIS A 230 REMARK 465 SER A 231 REMARK 465 ASP A 242A REMARK 465 GLU A 242B REMARK 465 LEU A 242C REMARK 465 LYS A 242D REMARK 465 PRO A 242E REMARK 465 ALA A 242F REMARK 465 HIS A 242G REMARK 465 ARG A 242H REMARK 465 LYS A 242I REMARK 465 ARG A 242J REMARK 465 GLU A 242K REMARK 465 LEU A 242L REMARK 465 PRO A 242M REMARK 465 SER A 242N REMARK 465 LEU A 242O REMARK 465 SER A 242P REMARK 465 PRO A 242Q REMARK 465 ALA A 242R REMARK 465 PRO A 242S REMARK 465 ASP A 242T REMARK 465 THR A 242U REMARK 465 GLY A 242V REMARK 465 LEU A 242W REMARK 465 SER A 242X REMARK 465 PRO A 242Y REMARK 465 SER A 242Z REMARK 465 LYS A 243A REMARK 465 ARG A 243B REMARK 465 THR A 243C REMARK 465 HIS A 243D REMARK 465 GLN A 243E REMARK 465 ARG A 243F REMARK 465 SER A 243G REMARK 465 LYS A 243H REMARK 465 SER A 243I REMARK 465 ASP A 243J REMARK 465 ALA A 243K REMARK 465 THR A 243L REMARK 465 ALA A 243M REMARK 465 SER A 243N REMARK 465 ILE A 243O REMARK 465 SER A 243P REMARK 465 LEU A 243Q REMARK 465 SER A 243R REMARK 465 SER A 243S REMARK 465 ASN A 243T REMARK 465 LEU A 243U REMARK 465 LYS A 243V REMARK 465 ARG A 243W REMARK 465 THR A 243X REMARK 465 ALA A 243Y REMARK 465 SER A 243Z REMARK 465 ASN A 244A REMARK 465 PRO A 244B REMARK 465 LYS A 244C REMARK 465 VAL A 244D REMARK 465 GLU A 244E REMARK 465 ASN A 244F REMARK 465 GLU A 244G REMARK 465 ASP A 244H REMARK 465 GLU A 244I REMARK 465 GLU A 244J REMARK 465 LEU A 244K REMARK 465 SER A 244L REMARK 465 SER A 244M REMARK 465 SER A 244N REMARK 465 THR A 244O REMARK 465 GLU A 244P REMARK 465 SER A 244Q REMARK 465 ILE A 244R REMARK 465 ASP A 244S REMARK 465 ASN A 244T REMARK 465 SER A 244U REMARK 465 PHE A 244V REMARK 465 SER A 244W REMARK 465 SER A 244X REMARK 465 PRO A 244Y REMARK 465 VAL A 244Z REMARK 465 ARG A 522 REMARK 465 ARG A 523 REMARK 465 ASP A 524 REMARK 465 PRO A 525 REMARK 465 GLU A 526 REMARK 465 ASP A 527 REMARK 465 PRO A 528 REMARK 465 SER A 529 REMARK 465 ALA A 530 REMARK 465 PRO A 698 REMARK 465 ARG A 699 REMARK 465 ASN A 700 REMARK 465 LEU A 701 REMARK 465 GLY A 702 REMARK 465 PHE A 703 REMARK 465 GLU A 704 REMARK 465 THR A 705 REMARK 465 SER A 706 REMARK 465 ALA A 707 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 70 REMARK 465 GLU B 71 REMARK 465 ARG B 72 REMARK 465 TYR B 73 REMARK 465 LYS B 179 REMARK 465 GLN B 180 REMARK 465 MET B 181 REMARK 465 SER B 182 REMARK 465 ASP B 183 REMARK 465 ARG B 184 REMARK 465 ARG B 185 REMARK 465 GLU B 186 REMARK 465 ASN B 187 REMARK 465 ASP B 188 REMARK 465 MET B 189 REMARK 465 SER B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 ASN B 193 REMARK 465 ASN B 194 REMARK 465 VAL B 195 REMARK 465 VAL B 196 REMARK 465 PRO B 197 REMARK 465 ILE B 198 REMARK 465 HIS B 199 REMARK 465 VAL B 200 REMARK 465 PRO B 201 REMARK 465 PRO B 202 REMARK 465 THR B 203 REMARK 465 THR B 204 REMARK 465 GLU B 205 REMARK 465 ASN B 206 REMARK 465 LYS B 207 REMARK 465 PRO B 208 REMARK 465 LYS B 209 REMARK 465 VAL B 210 REMARK 465 GLN B 211 REMARK 465 CYS B 212 REMARK 465 CYS B 213 REMARK 465 GLN B 214 REMARK 465 ASN B 215 REMARK 465 ILE B 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 406 CG OD1 ND2 REMARK 470 GLU A 587 CG CD OE1 OE2 REMARK 470 TYR B 8 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 PHE B 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LEU B 156 CG CD1 CD2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 306 NH2 ARG A 351 1.50 REMARK 500 N GLY B 23 O2B GSP B 301 2.13 REMARK 500 CB LEU A 348 NH1 ARG A 402 2.14 REMARK 500 C ARG A 306 NH2 ARG A 351 2.16 REMARK 500 O LEU A 344 O HIS A 346 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 349 CD PRO A 349 N -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 349 N - CA - CB ANGL. DEV. = -9.5 DEGREES REMARK 500 PRO A 349 N - CD - CG ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 379 63.97 -114.50 REMARK 500 LYS A 534 109.03 -59.86 REMARK 500 ARG A 590 66.71 -119.47 REMARK 500 PRO A 592 38.78 -87.62 REMARK 500 ILE A 688 -34.78 -133.94 REMARK 500 PHE A 690 30.98 -90.60 REMARK 500 PHE A 692 69.07 63.86 REMARK 500 LEU A 694 -126.36 59.76 REMARK 500 LEU A 710 79.17 -106.60 REMARK 500 HIS A 743 20.68 -140.45 REMARK 500 LYS B 125 47.09 73.21 REMARK 500 ASN B 146 -163.41 -110.86 REMARK 500 SER B 158 -1.12 84.30 REMARK 500 ARG B 174 7.05 -68.90 REMARK 500 ILE B 175 36.97 -97.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5W3 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSP B 301 DBREF 5FBV A 128 522 UNP Q9UBF8 PI4KB_HUMAN 128 422 DBREF 5FBV A 523 799 UNP Q9UBF8 PI4KB_HUMAN 523 799 DBREF 5FBV B 1 216 UNP P62491 RB11A_HUMAN 1 216 SEQADV 5FBV GLY B -4 UNP P62491 EXPRESSION TAG SEQADV 5FBV ALA B -3 UNP P62491 EXPRESSION TAG SEQADV 5FBV MET B -2 UNP P62491 EXPRESSION TAG SEQADV 5FBV GLY B -1 UNP P62491 EXPRESSION TAG SEQADV 5FBV SER B 0 UNP P62491 EXPRESSION TAG SEQADV 5FBV LEU B 70 UNP P62491 GLN 70 ENGINEERED MUTATION SEQRES 1 A 572 SER TRP LEU LEU ARG LEU PHE GLU SER LYS LEU PHE ASP SEQRES 2 A 572 ILE SER MET ALA ILE SER TYR LEU TYR ASN SER LYS GLU SEQRES 3 A 572 PRO GLY VAL GLN ALA TYR ILE GLY ASN ARG LEU PHE CYS SEQRES 4 A 572 PHE ARG ASN GLU ASP VAL ASP PHE TYR LEU PRO GLN LEU SEQRES 5 A 572 LEU ASN MET TYR ILE HIS MET ASP GLU ASP VAL GLY ASP SEQRES 6 A 572 ALA ILE LYS PRO TYR ILE VAL HIS ARG CYS ARG GLN SER SEQRES 7 A 572 ILE ASN PHE SER LEU GLN CYS ALA LEU LEU LEU GLY ALA SEQRES 8 A 572 TYR SER SER ASP MET HIS ILE SER THR GLN ARG HIS SER SEQRES 9 A 572 ARG GLY THR LYS LEU ARG LYS LEU ILE LEU SER ASP GLU SEQRES 10 A 572 LEU LYS PRO ALA HIS ARG LYS ARG GLU LEU PRO SER LEU SEQRES 11 A 572 SER PRO ALA PRO ASP THR GLY LEU SER PRO SER LYS ARG SEQRES 12 A 572 THR HIS GLN ARG SER LYS SER ASP ALA THR ALA SER ILE SEQRES 13 A 572 SER LEU SER SER ASN LEU LYS ARG THR ALA SER ASN PRO SEQRES 14 A 572 LYS VAL GLU ASN GLU ASP GLU GLU LEU SER SER SER THR SEQRES 15 A 572 GLU SER ILE ASP ASN SER PHE SER SER PRO VAL ARG LEU SEQRES 16 A 572 ALA PRO GLU ARG GLU PHE ILE LYS SER LEU MET ALA ILE SEQRES 17 A 572 GLY LYS ARG LEU ALA THR LEU PRO THR LYS GLU GLN LYS SEQRES 18 A 572 THR GLN ARG LEU ILE SER GLU LEU SER LEU LEU ASN HIS SEQRES 19 A 572 LYS LEU PRO ALA ARG VAL TRP LEU PRO THR ALA GLY PHE SEQRES 20 A 572 ASP HIS HIS VAL VAL ARG VAL PRO HIS THR GLN ALA VAL SEQRES 21 A 572 VAL LEU ASN SER LYS ASP LYS ALA PRO TYR LEU ILE TYR SEQRES 22 A 572 VAL GLU VAL LEU GLU CYS GLU ASN PHE ASP THR THR SER SEQRES 23 A 572 VAL PRO ALA ARG ILE PRO GLU ASN ARG ARG ASP PRO GLU SEQRES 24 A 572 ASP PRO SER ALA VAL ALA LEU LYS GLU PRO TRP GLN GLU SEQRES 25 A 572 LYS VAL ARG ARG ILE ARG GLU GLY SER PRO TYR GLY HIS SEQRES 26 A 572 LEU PRO ASN TRP ARG LEU LEU SER VAL ILE VAL LYS CYS SEQRES 27 A 572 GLY ASP ASP LEU ARG GLN GLU LEU LEU ALA PHE GLN VAL SEQRES 28 A 572 LEU LYS GLN LEU GLN SER ILE TRP GLU GLN GLU ARG VAL SEQRES 29 A 572 PRO LEU TRP ILE LYS PRO TYR LYS ILE LEU VAL ILE SER SEQRES 30 A 572 ALA ASP SER GLY MET ILE GLU PRO VAL VAL ASN ALA VAL SEQRES 31 A 572 SER ILE HIS GLN VAL LYS LYS GLN SER GLN LEU SER LEU SEQRES 32 A 572 LEU ASP TYR PHE LEU GLN GLU HIS GLY SER TYR THR THR SEQRES 33 A 572 GLU ALA PHE LEU SER ALA GLN ARG ASN PHE VAL GLN SER SEQRES 34 A 572 CYS ALA GLY TYR CYS LEU VAL CYS TYR LEU LEU GLN VAL SEQRES 35 A 572 LYS ASP ARG HIS ASN GLY ASN ILE LEU LEU ASP ALA GLU SEQRES 36 A 572 GLY HIS ILE ILE HIS ILE ASP PHE GLY PHE ILE LEU SER SEQRES 37 A 572 SER SER PRO ARG ASN LEU GLY PHE GLU THR SER ALA PHE SEQRES 38 A 572 LYS LEU THR THR GLU PHE VAL ASP VAL MET GLY GLY LEU SEQRES 39 A 572 ASP GLY ASP MET PHE ASN TYR TYR LYS MET LEU MET LEU SEQRES 40 A 572 GLN GLY LEU ILE ALA ALA ARG LYS HIS MET ASP LYS VAL SEQRES 41 A 572 VAL GLN ILE VAL GLU ILE MET GLN GLN GLY SER GLN LEU SEQRES 42 A 572 PRO CYS PHE HIS GLY SER SER THR ILE ARG ASN LEU LYS SEQRES 43 A 572 GLU ARG PHE HIS MET SER MET THR GLU GLU GLN LEU GLN SEQRES 44 A 572 LEU LEU VAL GLU GLN MET VAL ASP GLY SER MET ARG SER SEQRES 1 B 221 GLY ALA MET GLY SER MET GLY THR ARG ASP ASP GLU TYR SEQRES 2 B 221 ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SER GLY SEQRES 3 B 221 VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR ARG ASN SEQRES 4 B 221 GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY VAL GLU SEQRES 5 B 221 PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS THR ILE SEQRES 6 B 221 LYS ALA GLN ILE TRP ASP THR ALA GLY LEU GLU ARG TYR SEQRES 7 B 221 ARG ALA ILE THR SER ALA TYR TYR ARG GLY ALA VAL GLY SEQRES 8 B 221 ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU THR TYR SEQRES 9 B 221 GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG ASP HIS SEQRES 10 B 221 ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY ASN LYS SEQRES 11 B 221 SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR ASP GLU SEQRES 12 B 221 ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SER PHE ILE SEQRES 13 B 221 GLU THR SER ALA LEU ASP SER THR ASN VAL GLU ALA ALA SEQRES 14 B 221 PHE GLN THR ILE LEU THR GLU ILE TYR ARG ILE VAL SER SEQRES 15 B 221 GLN LYS GLN MET SER ASP ARG ARG GLU ASN ASP MET SER SEQRES 16 B 221 PRO SER ASN ASN VAL VAL PRO ILE HIS VAL PRO PRO THR SEQRES 17 B 221 THR GLU ASN LYS PRO LYS VAL GLN CYS CYS GLN ASN ILE HET 5W3 A 801 33 HET GSP B 301 46 HETNAM 5W3 ~{N}-[2-[[6-CHLORANYL-3-[3-(2-HYDROXYETHYLSULFAMOYL)-4- HETNAM 2 5W3 METHOXY-PHENYL]-2-METHYL-IMIDAZO[1,2-B]PYRIDAZIN-8- HETNAM 3 5W3 YL]AMINO]ETHY L]ETHANAMIDE HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE HETSYN 5W3 MI364 FORMUL 3 5W3 C20 H25 CL N6 O5 S FORMUL 4 GSP C10 H16 N5 O13 P3 S HELIX 1 AA1 SER A 128 GLU A 135 1 8 HELIX 2 AA2 ASP A 140 SER A 151 1 12 HELIX 3 AA3 GLU A 153 LEU A 164 1 12 HELIX 4 AA4 PHE A 165 PHE A 167 5 3 HELIX 5 AA5 ARG A 168 PHE A 174 1 7 HELIX 6 AA6 TYR A 175 MET A 186 1 12 HELIX 7 AA7 ASP A 187 SER A 205 1 19 HELIX 8 AA8 SER A 205 TYR A 219 1 15 HELIX 9 AA9 GLY A 233 SER A 242 1 10 HELIX 10 AB1 LEU A 307 LEU A 324 1 18 HELIX 11 AB2 ALA A 325 LEU A 327 5 3 HELIX 12 AB3 THR A 329 LEU A 343 1 15 HELIX 13 AB4 PRO A 367 ALA A 371 5 5 HELIX 14 AB5 ASN A 393 THR A 397 5 5 HELIX 15 AB6 PRO A 536 SER A 548 1 13 HELIX 16 AB7 PRO A 549 LEU A 553 5 5 HELIX 17 AB8 LEU A 569 GLU A 589 1 21 HELIX 18 AB9 ILE A 619 GLN A 627 1 9 HELIX 19 AC1 SER A 629 HIS A 638 1 10 HELIX 20 AC2 THR A 643 GLN A 668 1 26 HELIX 21 AC3 THR A 711 MET A 718 1 8 HELIX 22 AC4 GLY A 723 LYS A 742 1 20 HELIX 23 AC5 HIS A 743 GLN A 755 1 13 HELIX 24 AC6 LEU A 760 HIS A 764 5 5 HELIX 25 AC7 SER A 767 ARG A 775 1 9 HELIX 26 AC8 THR A 781 SER A 799 1 19 HELIX 27 AC9 GLY B 23 ASN B 34 1 12 HELIX 28 AD1 THR B 77 ARG B 82 5 6 HELIX 29 AD2 LYS B 95 ASN B 101 1 7 HELIX 30 AD3 ASN B 101 ALA B 113 1 13 HELIX 31 AD4 LEU B 128 ARG B 132 5 5 HELIX 32 AD5 PRO B 135 ASN B 146 1 12 HELIX 33 AD6 ASN B 160 ARG B 174 1 15 SHEET 1 AA1 3 HIS A 361 ARG A 365 0 SHEET 2 AA1 3 TYR A 382 GLU A 390 -1 O GLU A 387 N ARG A 365 SHEET 3 AA1 3 VAL A 372 VAL A 373 -1 N VAL A 372 O LEU A 383 SHEET 1 AA2 5 HIS A 361 ARG A 365 0 SHEET 2 AA2 5 TYR A 382 GLU A 390 -1 O GLU A 387 N ARG A 365 SHEET 3 AA2 5 TRP A 556 LYS A 564 -1 O LEU A 559 N VAL A 386 SHEET 4 AA2 5 GLY A 608 ILE A 610 -1 O ILE A 610 N ILE A 562 SHEET 5 AA2 5 ILE A 600 VAL A 602 -1 N LEU A 601 O MET A 609 SHEET 1 AA3 3 ALA A 616 SER A 618 0 SHEET 2 AA3 3 ILE A 677 ASP A 680 -1 O LEU A 679 N VAL A 617 SHEET 3 AA3 3 ILE A 685 HIS A 687 -1 O ILE A 686 N LEU A 678 SHEET 1 AA4 6 GLU B 47 VAL B 55 0 SHEET 2 AA4 6 LYS B 58 ASP B 66 -1 O ASP B 66 N GLU B 47 SHEET 3 AA4 6 TYR B 10 ILE B 17 1 N PHE B 12 O GLN B 63 SHEET 4 AA4 6 GLY B 86 ASP B 92 1 O VAL B 90 N ILE B 17 SHEET 5 AA4 6 VAL B 118 ASN B 124 1 O VAL B 118 N ALA B 87 SHEET 6 AA4 6 SER B 149 THR B 153 1 O SER B 149 N LEU B 121 SITE 1 AC1 16 LEU A 374 PRO A 381 LEU A 383 TYR A 385 SITE 2 AC1 16 ILE A 562 LYS A 564 TYR A 598 GLU A 611 SITE 3 AC1 16 PRO A 612 VAL A 613 VAL A 614 ASN A 615 SITE 4 AC1 16 ALA A 616 LEU A 678 ILE A 688 ASP A 689 SITE 1 AC2 22 GLY A 155 SER B 20 GLY B 21 VAL B 22 SITE 2 AC2 22 GLY B 23 LYS B 24 SER B 25 ASN B 26 SITE 3 AC2 22 PHE B 36 ASN B 37 LEU B 38 SER B 40 SITE 4 AC2 22 THR B 43 ALA B 68 GLY B 69 ASN B 124 SITE 5 AC2 22 LYS B 125 ASP B 127 LEU B 128 SER B 154 SITE 6 AC2 22 ALA B 155 LEU B 156 CRYST1 48.536 102.782 186.141 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005372 0.00000