HEADER VIRAL PROTEIN 09-FEB-15 4Y2C TITLE M300V 3D POLYMERASE MUTANT OF EMCV COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1834-2293; COMPND 5 EC: 3.6.1.15,3.4.22.28,2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: M300V 3DPOLYMERASE MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MENGO ENCEPHALOMYOCARDITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 12107; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PEGT20A KEYWDS RNA DEPENDENT RNA POLYMERASE CARDIOVIRUS INHIBITOR RESISTANCE, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.VERDAGUER,C.FERRER-ORTA,L.VIVES-ADRIAN REVDAT 2 10-JAN-24 4Y2C 1 REMARK REVDAT 1 01-APR-15 4Y2C 0 JRNL AUTH L.VAN DER LINDEN,L.VIVES-ADRIAN,B.SELISKO,C.FERRER-ORTA, JRNL AUTH 2 X.LIU,K.LANKE,R.ULFERTS,A.M.DE PALMA,F.TANCHIS,N.GORIS, JRNL AUTH 3 D.LEFEBVRE,K.DE CLERCQ,P.LEYSSEN,C.LACROIX,G.PURSTINGER, JRNL AUTH 4 B.COUTARD,B.CANARD,D.D.BOEHR,J.J.ARNOLD,C.E.CAMERON, JRNL AUTH 5 N.VERDAGUER,J.NEYTS,F.J.VAN KUPPEVELD JRNL TITL THE RNA TEMPLATE CHANNEL OF THE RNA-DEPENDENT RNA POLYMERASE JRNL TITL 2 AS A TARGET FOR DEVELOPMENT OF ANTIVIRAL THERAPY OF MULTIPLE JRNL TITL 3 GENERA WITHIN A VIRUS FAMILY. JRNL REF PLOS PATHOG. V. 11 04733 2015 JRNL REFN ESSN 1553-7374 JRNL PMID 25799064 JRNL DOI 10.1371/JOURNAL.PPAT.1004733 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 34387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.019 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3815 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3639 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5171 ; 0.870 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8376 ; 0.692 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 4.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;28.497 ;23.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;12.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;13.164 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4285 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 893 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 0.585 ; 2.679 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1852 ; 0.585 ; 2.679 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2319 ; 1.075 ; 4.018 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2320 ; 1.075 ; 4.018 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1962 ; 0.482 ; 2.694 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1962 ; 0.482 ; 2.694 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2851 ; 0.877 ; 4.018 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4310 ; 2.674 ;20.855 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4310 ; 2.674 ;20.855 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6107 -29.2783 -23.9134 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.1015 REMARK 3 T33: 0.0449 T12: -0.0045 REMARK 3 T13: 0.0139 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.5882 L22: 1.5740 REMARK 3 L33: 2.3006 L12: -0.3114 REMARK 3 L13: 0.5269 L23: 0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.0606 S13: 0.1458 REMARK 3 S21: -0.2327 S22: 0.0048 S23: -0.1419 REMARK 3 S31: -0.1488 S32: 0.3649 S33: 0.0371 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 240 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4308 -31.2566 -23.7719 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1032 REMARK 3 T33: 0.0242 T12: 0.0184 REMARK 3 T13: -0.0022 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5186 L22: 0.9465 REMARK 3 L33: 1.2323 L12: -0.2006 REMARK 3 L13: 0.3722 L23: 0.2719 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: -0.0159 S13: 0.0415 REMARK 3 S21: -0.1553 S22: -0.0300 S23: 0.0830 REMARK 3 S31: -0.0398 S32: 0.0839 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 507 B 512 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9037 -29.1247 -25.8746 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.4658 REMARK 3 T33: 0.0875 T12: -0.0928 REMARK 3 T13: 0.0339 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 7.2797 L22: 0.6052 REMARK 3 L33: 0.0281 L12: -2.0909 REMARK 3 L13: -0.1747 L23: 0.0604 REMARK 3 S TENSOR REMARK 3 S11: -0.1477 S12: -0.2890 S13: -0.3857 REMARK 3 S21: 0.0289 S22: 0.1288 S23: 0.1126 REMARK 3 S31: -0.0080 S32: 0.1103 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.0990 REMARK 3 T33: 0.0990 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.0990 REMARK 3 T33: 0.0990 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 43.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4NYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%PEG6000 2.0M NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 61.31600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.22950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.61475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.31600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.84425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.84425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.31600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.61475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 61.31600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.22950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.31600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 99.22950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.31600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 148.84425 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 49.61475 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.31600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 49.61475 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 148.84425 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.31600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.31600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 99.22950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 623 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 639 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 665 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 47.55 -83.51 REMARK 500 ASN A 238 105.26 -161.90 REMARK 500 PHE A 256 49.31 -88.34 REMARK 500 GLU A 281 -134.12 58.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 665 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NYZ RELATED DB: PDB REMARK 900 CONTAINS THE WILD TYPE POLYMERASE OF EMCV. REMARK 900 RELATED ID: 4NZ0 RELATED DB: PDB REMARK 900 CONTAINS THE WILD TYPE POLYMERASE OF EMCV. DBREF 4Y2C A 1 460 UNP P12296 POLG_ENMGO 1834 2293 SEQADV 4Y2C MET A 247 UNP P12296 VAL 2080 CONFLICT SEQADV 4Y2C VAL A 300 UNP P12296 MET 2133 ENGINEERED MUTATION SEQRES 1 A 460 GLY ALA LEU GLU ARG LEU PRO ASP GLY PRO ARG ILE HIS SEQRES 2 A 460 VAL PRO ARG LYS THR ALA LEU ARG PRO THR VAL ALA ARG SEQRES 3 A 460 GLN VAL PHE GLN PRO ALA PHE ALA PRO ALA VAL LEU SER SEQRES 4 A 460 LYS PHE ASP PRO ARG THR ASP ALA ASP VAL ASP GLU VAL SEQRES 5 A 460 ALA PHE SER LYS HIS THR SER ASN GLN GLU THR LEU PRO SEQRES 6 A 460 PRO VAL PHE ARG MET VAL ALA ARG GLU TYR ALA ASN ARG SEQRES 7 A 460 VAL PHE ALA LEU LEU GLY ARG ASP ASN GLY ARG LEU SER SEQRES 8 A 460 VAL LYS GLN ALA LEU ASP GLY LEU GLU GLY MET ASP PRO SEQRES 9 A 460 MET ASP LYS ASN THR SER PRO GLY LEU PRO TYR THR THR SEQRES 10 A 460 LEU GLY MET ARG ARG THR ASP VAL VAL ASP TRP GLU THR SEQRES 11 A 460 ALA THR LEU ILE PRO PHE ALA ALA GLU ARG LEU GLU LYS SEQRES 12 A 460 MET ASN ASN LYS ASP PHE SER ASP ILE VAL TYR GLN THR SEQRES 13 A 460 PHE LEU LYS ASP GLU LEU ARG PRO ILE GLU LYS VAL GLN SEQRES 14 A 460 ALA ALA LYS THR ARG ILE VAL ASP VAL PRO PRO PHE GLU SEQRES 15 A 460 HIS CYS ILE LEU GLY ARG GLN LEU LEU GLY LYS PHE ALA SEQRES 16 A 460 SER LYS PHE GLN THR GLN PRO GLY LEU GLU LEU GLY SER SEQRES 17 A 460 ALA ILE GLY CYS ASP PRO ASP VAL HIS TRP THR ALA PHE SEQRES 18 A 460 GLY VAL ALA MET GLN GLY PHE GLU ARG VAL TYR ASP VAL SEQRES 19 A 460 ASP TYR SER ASN PHE ASP SER THR HIS SER VAL ALA MET SEQRES 20 A 460 PHE ARG LEU LEU ALA GLU GLU PHE PHE SER GLU GLU ASN SEQRES 21 A 460 GLY PHE ASP PRO LEU VAL LYS ASP TYR LEU GLU SER LEU SEQRES 22 A 460 ALA ILE SER LYS HIS ALA TYR GLU GLU LYS ARG TYR LEU SEQRES 23 A 460 ILE THR GLY GLY LEU PRO SER GLY CYS ALA ALA THR SER SEQRES 24 A 460 VAL LEU ASN THR ILE MET ASN ASN ILE ILE ILE ARG ALA SEQRES 25 A 460 GLY LEU TYR LEU THR TYR LYS ASN PHE GLU PHE ASP ASP SEQRES 26 A 460 VAL LYS VAL LEU SER TYR GLY ASP ASP LEU LEU VAL ALA SEQRES 27 A 460 THR ASN TYR GLN LEU ASN PHE ASP ARG VAL ARG THR SER SEQRES 28 A 460 LEU ALA LYS THR GLY TYR LYS ILE THR PRO ALA ASN LYS SEQRES 29 A 460 THR SER THR PHE PRO LEU GLU SER THR LEU GLU ASP VAL SEQRES 30 A 460 VAL PHE LEU LYS ARG LYS PHE LYS LYS GLU GLY PRO LEU SEQRES 31 A 460 TYR ARG PRO VAL MET ASN ARG GLU ALA LEU GLU ALA MET SEQRES 32 A 460 LEU SER TYR TYR ARG PRO GLY THR LEU SER GLU LYS LEU SEQRES 33 A 460 THR SER ILE THR MET LEU ALA VAL HIS SER GLY LYS GLN SEQRES 34 A 460 GLU TYR ASP ARG LEU PHE ALA PRO PHE ARG GLU VAL GLY SEQRES 35 A 460 VAL ILE VAL PRO THR PHE GLU SER VAL GLU TYR ARG TRP SEQRES 36 A 460 ARG SER LEU PHE TRP HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 6 HOH *176(H2 O) HELIX 1 AA1 ALA A 25 GLN A 30 1 6 HELIX 2 AA2 ASP A 48 SER A 55 1 8 HELIX 3 AA3 LYS A 56 SER A 59 5 4 HELIX 4 AA4 PRO A 65 GLY A 84 1 20 HELIX 5 AA5 SER A 91 GLY A 98 1 8 HELIX 6 AA6 ARG A 121 VAL A 125 1 5 HELIX 7 AA7 ILE A 134 ASN A 146 1 13 HELIX 8 AA8 ILE A 165 ALA A 170 1 6 HELIX 9 AA9 PRO A 180 GLN A 199 1 20 HELIX 10 AB1 ASP A 213 GLN A 226 1 14 HELIX 11 AB2 SER A 244 PHE A 255 1 12 HELIX 12 AB3 SER A 257 GLY A 261 5 5 HELIX 13 AB4 LEU A 265 ALA A 274 1 10 HELIX 14 AB5 ALA A 297 TYR A 318 1 22 HELIX 15 AB6 GLU A 322 ASP A 324 5 3 HELIX 16 AB7 ASN A 344 LYS A 354 1 11 HELIX 17 AB8 ASN A 396 SER A 405 1 10 HELIX 18 AB9 THR A 411 VAL A 424 1 14 HELIX 19 AC1 GLY A 427 GLU A 440 1 14 HELIX 20 AC2 THR A 447 LEU A 458 1 12 SHEET 1 AA1 5 LEU A 3 ARG A 5 0 SHEET 2 AA1 5 LYS A 283 THR A 288 -1 O LEU A 286 N GLU A 4 SHEET 3 AA1 5 ILE A 275 TYR A 280 -1 N HIS A 278 O TYR A 285 SHEET 4 AA1 5 VAL A 153 LEU A 158 1 N TYR A 154 O ALA A 279 SHEET 5 AA1 5 ILE A 175 VAL A 178 -1 O VAL A 176 N PHE A 157 SHEET 1 AA2 2 ARG A 21 PRO A 22 0 SHEET 2 AA2 2 TYR A 406 TYR A 407 -1 O TYR A 407 N ARG A 21 SHEET 1 AA3 2 PHE A 33 PRO A 35 0 SHEET 2 AA3 2 LEU A 162 PRO A 164 -1 O ARG A 163 N ALA A 34 SHEET 1 AA4 2 VAL A 126 ASP A 127 0 SHEET 2 AA4 2 THR A 132 LEU A 133 -1 O THR A 132 N ASP A 127 SHEET 1 AA5 3 ARG A 230 ASP A 235 0 SHEET 2 AA5 3 ASP A 334 THR A 339 -1 O LEU A 335 N VAL A 234 SHEET 3 AA5 3 VAL A 326 TYR A 331 -1 N LYS A 327 O ALA A 338 SHEET 1 AA6 2 ARG A 382 GLU A 387 0 SHEET 2 AA6 2 LEU A 390 MET A 395 -1 O LEU A 390 N GLU A 387 CISPEP 1 LEU A 113 PRO A 114 0 1.86 SITE 1 AC1 10 TYR A 236 ASN A 238 SER A 241 ASN A 302 SITE 2 AC1 10 ASP A 333 HOH A 690 HOH A 692 HOH A 702 SITE 3 AC1 10 HOH A 736 HOH A 776 SITE 1 AC2 2 TYR A 331 ARG A 382 SITE 1 AC3 11 HIS A 57 ILE A 175 ASP A 177 SER A 276 SITE 2 AC3 11 HIS A 278 GLY A 289 GLY A 290 LEU A 291 SITE 3 AC3 11 PRO A 292 HOH A 659 HOH A 668 CRYST1 122.632 122.632 198.459 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005039 0.00000