HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-FEB-15 4Y2A TITLE CRYSTAL STRUCTURE OF COXSACKIE VIRUS B3 3D POLYMERASE IN COMPLEX WITH TITLE 2 GPC-N114 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3D POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 3 ORGANISM_TAXID: 12072; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYMERASE, PICORNAVIRUS, COXSACKIEVIRUS, GPC-N114, INHIBITOR, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.VIVES-ADRIAN,C.FERRER-ORTA,N.VERDAGUER REVDAT 3 10-JAN-24 4Y2A 1 REMARK REVDAT 2 08-APR-15 4Y2A 1 JRNL REVDAT 1 01-APR-15 4Y2A 0 JRNL AUTH L.VAN DER LINDEN,L.VIVES-ADRIAN,B.SELISKO,C.FERRER-ORTA, JRNL AUTH 2 X.LIU,K.LANKE,R.ULFERTS,A.M.DE PALMA,F.TANCHIS,N.GORIS, JRNL AUTH 3 D.LEFEBVRE,K.DE CLERCQ,P.LEYSSEN,C.LACROIX,G.PURSTINGER, JRNL AUTH 4 B.COUTARD,B.CANARD,D.D.BOEHR,J.J.ARNOLD,C.E.CAMERON, JRNL AUTH 5 N.VERDAGUER,J.NEYTS,F.J.VAN KUPPEVELD JRNL TITL THE RNA TEMPLATE CHANNEL OF THE RNA-DEPENDENT RNA POLYMERASE JRNL TITL 2 AS A TARGET FOR DEVELOPMENT OF ANTIVIRAL THERAPY OF MULTIPLE JRNL TITL 3 GENERA WITHIN A VIRUS FAMILY. JRNL REF PLOS PATHOG. V. 11 04733 2015 JRNL REFN ESSN 1553-7374 JRNL PMID 25799064 JRNL DOI 10.1371/JOURNAL.PPAT.1004733 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.51000 REMARK 3 B22 (A**2) : 3.51000 REMARK 3 B33 (A**2) : -7.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.695 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.341 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.245 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3912 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3663 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5294 ; 1.712 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8457 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.648 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;38.027 ;23.736 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;18.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4316 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 892 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1865 ; 3.783 ; 5.271 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1864 ; 3.769 ; 5.269 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2330 ; 5.802 ; 7.902 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2331 ; 5.802 ; 7.905 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2047 ; 4.659 ; 5.906 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2047 ; 4.652 ; 5.906 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2964 ; 7.400 ; 8.637 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4434 ; 9.819 ;43.371 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4433 ; 9.819 ;43.372 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 72.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : 0.35700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3DDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 7.5, 24.5% (W/V) REMARK 280 GLYCEROL, 1.29 M AMMONIUM SULFATE., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 216.78750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.26250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 216.78750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.26250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 144.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 428 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 428 CB HIS A 428 CG -0.256 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 74.62 68.95 REMARK 500 THR A 104 165.79 161.23 REMARK 500 LEU A 107 97.18 -162.64 REMARK 500 LYS A 136 40.89 28.45 REMARK 500 ASN A 151 42.20 73.51 REMARK 500 LEU A 225 76.40 -115.58 REMARK 500 ARG A 277 -108.48 43.65 REMARK 500 CYS A 291 172.41 -55.96 REMARK 500 ASP A 359 173.02 48.04 REMARK 500 ASN A 365 176.15 -59.66 REMARK 500 LYS A 376 11.13 56.12 REMARK 500 ALA A 381 134.96 -39.75 REMARK 500 THR A 405 141.57 -173.22 REMARK 500 ASP A 407 103.88 -162.49 REMARK 500 HIS A 465 -177.83 -63.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 464 HIS A 465 -135.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1FS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 DBREF 4Y2A A 1 462 UNP P03313 POLG_CXB3N 1724 2185 SEQADV 4Y2A HIS A 463 UNP P03313 EXPRESSION TAG SEQADV 4Y2A HIS A 464 UNP P03313 EXPRESSION TAG SEQADV 4Y2A HIS A 465 UNP P03313 EXPRESSION TAG SEQADV 4Y2A HIS A 466 UNP P03313 EXPRESSION TAG SEQRES 1 A 466 GLY GLU ILE GLU PHE ILE GLU SER SER LYS ASP ALA GLY SEQRES 2 A 466 PHE PRO VAL ILE ASN THR PRO SER LYS THR LYS LEU GLU SEQRES 3 A 466 PRO SER VAL PHE HIS GLN VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 466 PRO ALA VAL LEU ARG SER GLY ASP PRO ARG LEU LYS ALA SEQRES 5 A 466 ASN PHE GLU GLU ALA ILE PHE SER LYS TYR ILE GLY ASN SEQRES 6 A 466 VAL ASN THR HIS VAL ASP GLU TYR MET LEU GLU ALA VAL SEQRES 7 A 466 ASP HIS TYR ALA GLY GLN LEU ALA THR LEU ASP ILE SER SEQRES 8 A 466 THR GLU PRO MET LYS LEU GLU ASP ALA VAL TYR GLY THR SEQRES 9 A 466 GLU GLY LEU GLU ALA LEU ASP LEU THR THR SER ALA GLY SEQRES 10 A 466 TYR PRO TYR VAL ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 466 LEU SER LYS LYS THR LYS ASP LEU THR LYS LEU LYS GLU SEQRES 12 A 466 CYS MET ASP LYS TYR GLY LEU ASN LEU PRO MET VAL THR SEQRES 13 A 466 TYR VAL LYS ASP GLU LEU ARG SER ILE GLU LYS VAL ALA SEQRES 14 A 466 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 466 ASP SER VAL ALA MET ARG GLN THR PHE GLY ASN LEU TYR SEQRES 16 A 466 LYS THR PHE HIS LEU ASN PRO GLY VAL VAL THR GLY SER SEQRES 17 A 466 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 466 PRO VAL MET LEU ASP GLY HIS LEU ILE ALA PHE ASP TYR SEQRES 19 A 466 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ALA SEQRES 20 A 466 CYS LEU LYS MET LEU LEU GLU LYS LEU GLY TYR THR HIS SEQRES 21 A 466 LYS GLU THR ASN TYR ILE ASP TYR LEU CYS ASN SER HIS SEQRES 22 A 466 HIS LEU TYR ARG ASP LYS HIS TYR PHE VAL ARG GLY GLY SEQRES 23 A 466 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 466 MET ILE ASN ASN ILE ILE ILE ARG THR LEU MET LEU LYS SEQRES 25 A 466 VAL TYR LYS GLY ILE ASP LEU ASP GLN PHE ARG MET ILE SEQRES 26 A 466 ALA TYR GLY ASP ASP VAL ILE ALA SER TYR PRO TRP PRO SEQRES 27 A 466 ILE ASP ALA SER LEU LEU ALA GLU ALA GLY LYS GLY TYR SEQRES 28 A 466 GLY LEU ILE MET THR PRO ALA ASP LYS GLY GLU CYS PHE SEQRES 29 A 466 ASN GLU VAL THR TRP THR ASN ALA THR PHE LEU LYS ARG SEQRES 30 A 466 TYR PHE ARG ALA ASP GLU GLN TYR PRO PHE LEU VAL HIS SEQRES 31 A 466 PRO VAL MET PRO MET LYS ASP ILE HIS GLU SER ILE ARG SEQRES 32 A 466 TRP THR LYS ASP PRO LYS ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 466 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU HIS GLU SEQRES 34 A 466 TYR GLU GLU PHE ILE ARG LYS ILE ARG SER VAL PRO VAL SEQRES 35 A 466 GLY ARG CYS LEU THR LEU PRO ALA PHE SER THR LEU ARG SEQRES 36 A 466 ARG LYS TRP LEU ASP SER PHE HIS HIS HIS HIS HET 1FS A 501 31 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HETNAM 1FS 2,2'-[(4-CHLOROBENZENE-1,2-DIYL)BIS(OXY)]BIS(5- HETNAM 2 1FS NITROBENZONITRILE) HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 1FS C20 H9 CL N4 O6 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 HOH *25(H2 O) HELIX 1 AA1 LYS A 10 GLY A 13 5 4 HELIX 2 AA2 ASN A 53 SER A 60 1 8 HELIX 3 AA3 ASP A 71 THR A 87 1 17 HELIX 4 AA4 LYS A 96 GLY A 103 1 8 HELIX 5 AA5 LYS A 126 LEU A 131 1 6 HELIX 6 AA6 LEU A 138 GLY A 149 1 12 HELIX 7 AA7 ILE A 165 GLY A 171 1 7 HELIX 8 AA8 SER A 180 ASN A 201 1 22 HELIX 9 AA9 ASP A 213 TRP A 218 1 6 HELIX 10 AB1 LYS A 220 LEU A 225 1 6 HELIX 11 AB2 GLY A 236 LEU A 241 1 6 HELIX 12 AB3 SER A 242 LYS A 255 1 14 HELIX 13 AB4 HIS A 260 GLU A 262 5 3 HELIX 14 AB5 THR A 263 CYS A 270 1 8 HELIX 15 AB6 GLY A 293 TYR A 314 1 22 HELIX 16 AB7 ASP A 318 PHE A 322 5 5 HELIX 17 AB8 ASP A 340 GLY A 350 1 11 HELIX 18 AB9 PRO A 394 ARG A 403 1 10 HELIX 19 AC1 ASP A 407 LYS A 409 5 3 HELIX 20 AC2 ASN A 410 TRP A 423 1 14 HELIX 21 AC3 GLY A 426 ARG A 438 1 13 HELIX 22 AC4 SER A 439 LEU A 446 5 8 HELIX 23 AC5 ALA A 450 ASP A 460 1 11 HELIX 24 AC6 SER A 461 HIS A 463 5 3 SHEET 1 AA1 5 GLU A 2 SER A 8 0 SHEET 2 AA1 5 LYS A 279 ARG A 284 -1 O ARG A 284 N GLU A 2 SHEET 3 AA1 5 ASN A 271 TYR A 276 -1 N TYR A 276 O LYS A 279 SHEET 4 AA1 5 MET A 154 VAL A 158 1 N MET A 154 O LEU A 275 SHEET 5 AA1 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 AA2 2 GLU A 26 PRO A 27 0 SHEET 2 AA2 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 AA3 2 LYS A 38 PRO A 40 0 SHEET 2 AA3 2 LEU A 162 SER A 164 -1 O ARG A 163 N GLU A 39 SHEET 1 AA4 4 ARG A 323 TYR A 327 0 SHEET 2 AA4 4 ASP A 330 TYR A 335 -1 O ILE A 332 N ILE A 325 SHEET 3 AA4 4 HIS A 228 TYR A 234 -1 N HIS A 228 O TYR A 335 SHEET 4 AA4 4 MET A 355 PRO A 357 -1 O THR A 356 N ASP A 233 SHEET 1 AA5 3 THR A 373 PHE A 374 0 SHEET 2 AA5 3 ARG A 377 ALA A 381 -1 O ARG A 377 N PHE A 374 SHEET 3 AA5 3 VAL A 389 VAL A 392 -1 O VAL A 392 N TYR A 378 CISPEP 1 TYR A 118 PRO A 119 0 -1.02 SITE 1 AC1 15 LEU A 107 GLU A 108 ASP A 111 SER A 184 SITE 2 AC1 15 ARG A 188 HIS A 199 GLY A 290 CYS A 291 SITE 3 AC1 15 SER A 292 GLY A 293 THR A 294 SER A 295 SITE 4 AC1 15 ILE A 296 TYR A 327 HOH A 618 SITE 1 AC2 3 LYS A 61 ARG A 174 GLY A 236 SITE 1 AC3 3 ARG A 416 PRO A 449 THR A 453 SITE 1 AC4 4 GLN A 384 TYR A 385 LYS A 409 ARG A 455 SITE 1 AC5 4 LYS A 38 LYS A 376 ASP A 397 GLU A 400 SITE 1 AC6 3 GLY A 426 GLU A 427 HIS A 428 SITE 1 AC7 2 LYS A 406 HIS A 414 SITE 1 AC8 5 TYR A 385 LEU A 388 PRO A 408 LEU A 459 SITE 2 AC8 5 HIS A 463 SITE 1 AC9 3 ARG A 44 SER A 45 GLY A 46 SITE 1 AD1 5 LYS A 38 ARG A 163 SER A 164 LYS A 167 SITE 2 AD1 5 ARG A 174 CRYST1 74.740 74.740 289.050 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003460 0.00000