HEADER REPLICATION/DNA 20-JAN-15 4XR0 TITLE ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH TITLE 2 DNA- G/T MISMATCH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPLICATION TERMINUS SITE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TER-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*GP*T)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: TERA COMPLIMENTARY STRAND; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*AP*TP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)- COMPND 14 3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES; COMPND 18 OTHER_DETAILS: TERA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: TUS, TAU, B1610, JW1602; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCM862; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562; SOURCE 14 OTHER_DETAILS: TERA; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 18 ORGANISM_TAXID: 562 KEYWDS DNA COMPLEX, REPLICATION, TUS, TER, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY REVDAT 5 27-SEP-23 4XR0 1 REMARK REVDAT 4 01-JAN-20 4XR0 1 JRNL REMARK REVDAT 3 30-SEP-15 4XR0 1 JRNL REVDAT 2 16-SEP-15 4XR0 1 JRNL REVDAT 1 26-AUG-15 4XR0 0 JRNL AUTH M.M.ELSHENAWY,S.JERGIC,Z.Q.XU,M.A.SOBHY,M.TAKAHASHI, JRNL AUTH 2 A.J.OAKLEY,N.E.DIXON,S.M.HAMDAN JRNL TITL REPLISOME SPEED DETERMINES THE EFFICIENCY OF THE TUS-TER JRNL TITL 2 REPLICATION TERMINATION BARRIER. JRNL REF NATURE V. 525 394 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26322585 JRNL DOI 10.1038/NATURE14866 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 12822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2504 REMARK 3 NUCLEIC ACID ATOMS : 577 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.75000 REMARK 3 B22 (A**2) : 2.75000 REMARK 3 B33 (A**2) : -5.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.943 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.369 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3214 ; 0.016 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4485 ; 2.160 ; 1.782 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 8.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;38.088 ;23.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;23.702 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.505 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2249 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 1.924 ; 2.454 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1537 ; 3.266 ; 3.675 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1983 ; 2.009 ; 2.608 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5042 ; 6.363 ;22.264 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 309 REMARK 3 RESIDUE RANGE : A 1001 A 1005 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5315 -7.1069 -14.9032 REMARK 3 T TENSOR REMARK 3 T11: 0.0296 T22: 0.1237 REMARK 3 T33: 0.1641 T12: -0.0473 REMARK 3 T13: -0.0579 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 0.7375 L22: 0.9764 REMARK 3 L33: 4.0527 L12: -0.1982 REMARK 3 L13: -0.0546 L23: 0.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0210 S13: -0.1333 REMARK 3 S21: 0.0005 S22: 0.0024 S23: 0.1261 REMARK 3 S31: 0.1191 S32: -0.3151 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 311 B 325 REMARK 3 ORIGIN FOR THE GROUP (A): -24.5290 -5.1080 -8.0324 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.2002 REMARK 3 T33: 0.0476 T12: 0.0412 REMARK 3 T13: 0.0106 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 8.9880 L22: 4.9514 REMARK 3 L33: 2.4529 L12: -0.5300 REMARK 3 L13: 0.8212 L23: 1.9636 REMARK 3 S TENSOR REMARK 3 S11: 0.2417 S12: -0.0958 S13: 0.4003 REMARK 3 S21: 0.2386 S22: -0.1794 S23: 0.1059 REMARK 3 S31: 0.1433 S32: -0.2658 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 328 C 342 REMARK 3 ORIGIN FOR THE GROUP (A): -25.8652 -4.3844 -7.1498 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.1404 REMARK 3 T33: 0.0424 T12: 0.0311 REMARK 3 T13: -0.0310 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.8783 L22: 6.3113 REMARK 3 L33: 6.2466 L12: 0.0690 REMARK 3 L13: 0.2002 L23: -0.5602 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: 0.2637 S13: -0.1503 REMARK 3 S21: 0.2753 S22: -0.0053 S23: 0.1185 REMARK 3 S31: -0.1134 S32: -0.5433 S33: -0.1471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4XR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 75.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.90 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2I06 REMARK 200 REMARK 200 REMARK: BIPYRAMIDS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% (V/V) PEG 3350, 100 MM NAI, 50 REMARK 280 MM BIS-TRIS, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.16750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.26150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.26150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.08375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.26150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.26150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 186.25125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.26150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.26150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.08375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.26150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.26150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 186.25125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 124.16750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 DT B 310 REMARK 465 DT C 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 DT B 311 P OP1 OP2 REMARK 470 DT B 325 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT B 325 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT B 325 C7 C6 REMARK 470 DA C 328 P OP1 OP2 REMARK 470 DA C 342 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA C 342 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA C 342 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 280 O HOH A 1107 2.03 REMARK 500 OG SER A 88 OP1 DA B 323 2.06 REMARK 500 O ASP A 247 N LYS A 249 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 320 O3' DA B 321 P -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 42 C - N - CA ANGL. DEV. = -15.0 DEGREES REMARK 500 VAL A 307 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 DC B 317 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 DA B 318 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA B 323 O5' - P - OP1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA C 338 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 -98.17 -123.47 REMARK 500 ASP A 5 -45.85 74.42 REMARK 500 GLU A 29 10.08 -60.10 REMARK 500 ASN A 51 142.38 -32.80 REMARK 500 PRO A 52 174.37 -56.03 REMARK 500 ILE A 79 21.88 -77.34 REMARK 500 ASN A 85 -16.20 -46.86 REMARK 500 VAL A 130 -61.24 -133.06 REMARK 500 ASN A 174 75.76 -115.79 REMARK 500 ARG A 183 -28.25 -38.04 REMARK 500 LEU A 194 -83.77 -66.89 REMARK 500 LYS A 195 104.06 -59.54 REMARK 500 SER A 196 -104.14 169.46 REMARK 500 PRO A 197 -88.35 -84.92 REMARK 500 ARG A 198 -170.91 88.40 REMARK 500 SER A 199 78.47 54.17 REMARK 500 ALA A 201 -82.30 -12.23 REMARK 500 ARG A 205 -53.03 16.25 REMARK 500 LYS A 227 99.84 -67.82 REMARK 500 LYS A 229 148.19 179.17 REMARK 500 LYS A 235 152.49 -49.55 REMARK 500 GLN A 248 68.02 -51.31 REMARK 500 GLN A 292 140.11 -37.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 204 ARG A 205 146.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ECR RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA REMARK 900 RELATED ID: 2EWJ RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA REMARK 900 RELATED ID: 2I05 RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA REMARK 900 RELATED ID: 2I06 RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA- LOCKED FORM REMARK 900 RELATED ID: 4XR1 RELATED DB: PDB REMARK 900 RELATED ID: 4XR2 RELATED DB: PDB REMARK 900 RELATED ID: 4XR3 RELATED DB: PDB DBREF 4XR0 A 1 309 UNP P16525 TUS_ECOLI 1 309 DBREF 4XR0 B 310 325 PDB 4XR0 4XR0 310 325 DBREF 4XR0 C 327 342 PDB 4XR0 4XR0 327 342 SEQADV 4XR0 MET A -6 UNP P16525 INITIATING METHIONINE SEQADV 4XR0 HIS A -5 UNP P16525 EXPRESSION TAG SEQADV 4XR0 HIS A -4 UNP P16525 EXPRESSION TAG SEQADV 4XR0 HIS A -3 UNP P16525 EXPRESSION TAG SEQADV 4XR0 HIS A -2 UNP P16525 EXPRESSION TAG SEQADV 4XR0 HIS A -1 UNP P16525 EXPRESSION TAG SEQADV 4XR0 HIS A 0 UNP P16525 EXPRESSION TAG SEQRES 1 A 316 MET HIS HIS HIS HIS HIS HIS MET ALA ARG TYR ASP LEU SEQRES 2 A 316 VAL ASP ARG LEU ASN THR THR PHE ARG GLN MET GLU GLN SEQRES 3 A 316 GLU LEU ALA ILE PHE ALA ALA HIS LEU GLU GLN HIS LYS SEQRES 4 A 316 LEU LEU VAL ALA ARG VAL PHE SER LEU PRO GLU VAL LYS SEQRES 5 A 316 LYS GLU ASP GLU HIS ASN PRO LEU ASN ARG ILE GLU VAL SEQRES 6 A 316 LYS GLN HIS LEU GLY ASN ASP ALA GLN SER LEU ALA LEU SEQRES 7 A 316 ARG HIS PHE ARG HIS LEU PHE ILE GLN GLN GLN SER GLU SEQRES 8 A 316 ASN ARG SER SER LYS ALA ALA VAL ARG LEU PRO GLY VAL SEQRES 9 A 316 LEU CYS TYR GLN VAL ASP ASN LEU SER GLN ALA ALA LEU SEQRES 10 A 316 VAL SER HIS ILE GLN HIS ILE ASN LYS LEU LYS THR THR SEQRES 11 A 316 PHE GLU HIS ILE VAL THR VAL GLU SER GLU LEU PRO THR SEQRES 12 A 316 ALA ALA ARG PHE GLU TRP VAL HIS ARG HIS LEU PRO GLY SEQRES 13 A 316 LEU ILE THR LEU ASN ALA TYR ARG THR LEU THR VAL LEU SEQRES 14 A 316 HIS ASP PRO ALA THR LEU ARG PHE GLY TRP ALA ASN LYS SEQRES 15 A 316 HIS ILE ILE LYS ASN LEU HIS ARG ASP GLU VAL LEU ALA SEQRES 16 A 316 GLN LEU GLU LYS SER LEU LYS SER PRO ARG SER VAL ALA SEQRES 17 A 316 PRO TRP THR ARG GLU GLU TRP GLN ARG LYS LEU GLU ARG SEQRES 18 A 316 GLU TYR GLN ASP ILE ALA ALA LEU PRO GLN ASN ALA LYS SEQRES 19 A 316 LEU LYS ILE LYS ARG PRO VAL LYS VAL GLN PRO ILE ALA SEQRES 20 A 316 ARG VAL TRP TYR LYS GLY ASP GLN LYS GLN VAL GLN HIS SEQRES 21 A 316 ALA CYS PRO THR PRO LEU ILE ALA LEU ILE ASN ARG ASP SEQRES 22 A 316 ASN GLY ALA GLY VAL PRO ASP VAL GLY GLU LEU LEU ASN SEQRES 23 A 316 TYR ASP ALA ASP ASN VAL GLN HIS ARG TYR LYS PRO GLN SEQRES 24 A 316 ALA GLN PRO LEU ARG LEU ILE ILE PRO ARG LEU HIS LEU SEQRES 25 A 316 TYR VAL ALA ASP SEQRES 1 B 16 DT DT DA DG DT DT DA DC DA DA DC DA DT SEQRES 2 B 16 DA DG DT SEQRES 1 C 16 DT DA DT DT DA DT DG DT DT DG DT DA DA SEQRES 2 C 16 DC DT DA HET IOD A1001 1 HET IOD A1002 1 HET IOD A1003 1 HET IOD A1004 1 HET IOD A1005 1 HET MPD B 401 8 HETNAM IOD IODIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 4 IOD 5(I 1-) FORMUL 9 MPD C6 H14 O2 FORMUL 10 HOH *31(H2 O) HELIX 1 AA1 LEU A 6 GLU A 29 1 24 HELIX 2 AA2 GLY A 63 ARG A 75 1 13 HELIX 3 AA3 ASP A 103 VAL A 130 1 28 HELIX 4 AA4 PRO A 135 LEU A 147 1 13 HELIX 5 AA5 ILE A 151 ARG A 157 1 7 HELIX 6 AA6 ARG A 183 LYS A 195 1 13 HELIX 7 AA7 THR A 204 ALA A 221 1 18 HELIX 8 AA8 ASP A 266 GLY A 268 5 3 HELIX 9 AA9 ASP A 283 VAL A 285 5 3 HELIX 10 AB1 PRO A 301 LEU A 303 5 3 SHEET 1 AA1 5 LYS A 59 LEU A 62 0 SHEET 2 AA1 5 LEU A 33 SER A 40 -1 N VAL A 38 O HIS A 61 SHEET 3 AA1 5 GLY A 96 VAL A 102 -1 O VAL A 97 N ARG A 37 SHEET 4 AA1 5 LEU A 259 ASN A 264 1 O ILE A 263 N TYR A 100 SHEET 5 AA1 5 VAL A 161 HIS A 163 1 N LEU A 162 O LEU A 262 SHEET 1 AA2 2 ARG A 55 ILE A 56 0 SHEET 2 AA2 2 TYR A 280 ASP A 281 -1 O TYR A 280 N ILE A 56 SHEET 1 AA3 4 VAL A 251 ALA A 254 0 SHEET 2 AA3 4 GLN A 237 TRP A 243 -1 N ALA A 240 O HIS A 253 SHEET 3 AA3 4 THR A 167 ALA A 173 -1 N ALA A 173 O GLN A 237 SHEET 4 AA3 4 ASP A 273 VAL A 274 1 O ASP A 273 N LEU A 168 SHEET 1 AA4 4 HIS A 176 HIS A 182 0 SHEET 2 AA4 4 LYS A 227 PRO A 233 -1 O ARG A 232 N ILE A 177 SHEET 3 AA4 4 LEU A 305 VAL A 307 -1 O TYR A 306 N LYS A 229 SHEET 4 AA4 4 ARG A 297 ILE A 300 -1 N ILE A 299 O LEU A 305 SITE 1 AC1 1 ASP A 103 SITE 1 AC2 2 GLN A 30 ARG A 297 SITE 1 AC3 1 ARG A 232 SITE 1 AC4 1 ALA A 36 SITE 1 AC5 1 GLN A 224 SITE 1 AC6 5 GLU A 125 DA B 319 DC B 320 DT C 335 SITE 2 AC6 5 DG C 336 CRYST1 64.523 64.523 248.335 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004027 0.00000