HEADER SIGNALING PROTEIN 06-AUG-14 4U9G TITLE CRYSTAL STRUCTURE OF AN H-NOX PROTEIN FROM S. ONEIDENSIS IN THE TITLE 2 FE(II)CO LIGATION STATE, Q154A/Q155A/K156A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NO-BINDING HEME-DEPENDENT SENSOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_2144; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RP523(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET20 KEYWDS H-NOX, HEMOPROTEIN, GAS SENSOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HERZIK JR.,R.JONNALAGADDA,J.KURIYAN,M.A.MARLETTA REVDAT 4 27-SEP-23 4U9G 1 SOURCE JRNL REMARK LINK REVDAT 3 15-OCT-14 4U9G 1 JRNL REVDAT 2 08-OCT-14 4U9G 1 JRNL SITE REVDAT 1 01-OCT-14 4U9G 0 JRNL AUTH M.A.HERZIK,R.JONNALAGADDA,J.KURIYAN,M.A.MARLETTA JRNL TITL STRUCTURAL INSIGHTS INTO THE ROLE OF IRON-HISTIDINE BOND JRNL TITL 2 CLEAVAGE IN NITRIC OXIDE-INDUCED ACTIVATION OF H-NOX GAS JRNL TITL 3 SENSOR PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E4156 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25253889 JRNL DOI 10.1073/PNAS.1416936111 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 70856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0150 - 6.6578 0.94 2560 99 0.1451 0.1822 REMARK 3 2 6.6578 - 5.2876 0.95 2560 134 0.1544 0.1282 REMARK 3 3 5.2876 - 4.6201 0.96 2574 126 0.1251 0.1316 REMARK 3 4 4.6201 - 4.1981 0.96 2572 131 0.1268 0.1214 REMARK 3 5 4.1981 - 3.8974 0.96 2573 148 0.1392 0.1631 REMARK 3 6 3.8974 - 3.6677 0.96 2553 154 0.1648 0.1825 REMARK 3 7 3.6677 - 3.4841 0.97 2615 119 0.1725 0.1810 REMARK 3 8 3.4841 - 3.3325 0.96 2541 150 0.1712 0.1951 REMARK 3 9 3.3325 - 3.2043 0.97 2604 144 0.1899 0.1899 REMARK 3 10 3.2043 - 3.0937 0.97 2618 120 0.1933 0.3012 REMARK 3 11 3.0937 - 2.9970 0.97 2588 150 0.2073 0.2098 REMARK 3 12 2.9970 - 2.9114 0.97 2610 145 0.2013 0.2108 REMARK 3 13 2.9114 - 2.8347 0.98 2592 166 0.2202 0.2193 REMARK 3 14 2.8347 - 2.7656 0.98 2608 120 0.2135 0.1910 REMARK 3 15 2.7656 - 2.7027 0.98 2628 135 0.2260 0.2601 REMARK 3 16 2.7027 - 2.6452 0.97 2592 156 0.2357 0.2510 REMARK 3 17 2.6452 - 2.5923 0.98 2650 128 0.2398 0.2302 REMARK 3 18 2.5923 - 2.5434 0.98 2622 122 0.2507 0.2728 REMARK 3 19 2.5434 - 2.4980 0.98 2595 167 0.2604 0.2410 REMARK 3 20 2.4980 - 2.4556 0.98 2641 129 0.2622 0.2697 REMARK 3 21 2.4556 - 2.4160 0.98 2579 171 0.2564 0.2726 REMARK 3 22 2.4160 - 2.3789 0.99 2685 126 0.2715 0.2672 REMARK 3 23 2.3789 - 2.3439 0.98 2610 153 0.2973 0.3162 REMARK 3 24 2.3439 - 2.3109 0.99 2632 138 0.2944 0.2946 REMARK 3 25 2.3109 - 2.2796 0.99 2646 106 0.3125 0.3448 REMARK 3 26 2.2796 - 2.2500 0.84 2237 134 0.4940 0.4233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3159 REMARK 3 ANGLE : 0.887 4290 REMARK 3 CHIRALITY : 0.028 460 REMARK 3 PLANARITY : 0.003 552 REMARK 3 DIHEDRAL : 14.513 1118 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1:73 REMARK 3 ORIGIN FOR THE GROUP (A): -37.4677 -99.9522 94.8157 REMARK 3 T TENSOR REMARK 3 T11: 0.6404 T22: 0.5578 REMARK 3 T33: 0.5690 T12: 0.1644 REMARK 3 T13: -0.1715 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 3.8654 L22: 2.5814 REMARK 3 L33: 3.5342 L12: -0.2548 REMARK 3 L13: -0.8016 L23: 0.2378 REMARK 3 S TENSOR REMARK 3 S11: 0.1868 S12: 0.6957 S13: -0.4242 REMARK 3 S21: -0.7056 S22: -0.2349 S23: 0.3727 REMARK 3 S31: 0.4604 S32: 0.2375 S33: 0.0119 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 74:159 REMARK 3 ORIGIN FOR THE GROUP (A): -37.7390 -89.6844 112.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.3846 REMARK 3 T33: 0.4652 T12: 0.0458 REMARK 3 T13: -0.0603 T23: 0.1024 REMARK 3 L TENSOR REMARK 3 L11: 1.7294 L22: 3.5785 REMARK 3 L33: 3.6328 L12: -0.1193 REMARK 3 L13: 1.4830 L23: -0.3837 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.0901 S13: 0.1402 REMARK 3 S21: -0.1164 S22: 0.0205 S23: 0.3597 REMARK 3 S31: -0.0266 S32: -0.0847 S33: -0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 160:187 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0852 -90.5835 117.4903 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.5580 REMARK 3 T33: 0.5229 T12: 0.0497 REMARK 3 T13: -0.0916 T23: 0.1114 REMARK 3 L TENSOR REMARK 3 L11: 1.3416 L22: 9.5120 REMARK 3 L33: 1.1761 L12: 3.5678 REMARK 3 L13: -0.2305 L23: 1.4018 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: 0.0765 S13: 0.0315 REMARK 3 S21: 0.1175 S22: 0.0875 S23: 0.1297 REMARK 3 S31: 0.1347 S32: 0.4129 S33: -0.1946 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 201 REMARK 3 ORIGIN FOR THE GROUP (A): -40.7816 -94.0714 109.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.3725 T22: 0.4817 REMARK 3 T33: 0.5189 T12: 0.0641 REMARK 3 T13: -0.1016 T23: 0.1288 REMARK 3 L TENSOR REMARK 3 L11: 7.4028 L22: 5.1621 REMARK 3 L33: 5.6688 L12: 5.7955 REMARK 3 L13: 3.2373 L23: 4.1766 REMARK 3 S TENSOR REMARK 3 S11: 0.2755 S12: 0.1590 S13: 0.1953 REMARK 3 S21: -0.2224 S22: -0.2509 S23: 0.4287 REMARK 3 S31: 0.0975 S32: 0.1779 S33: -0.0411 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESID 1:88 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8702-122.8077 114.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.4560 T22: 0.3945 REMARK 3 T33: 0.4734 T12: 0.1227 REMARK 3 T13: -0.1190 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.6742 L22: 5.1300 REMARK 3 L33: 5.5738 L12: -0.3329 REMARK 3 L13: 0.7592 L23: -1.5665 REMARK 3 S TENSOR REMARK 3 S11: 0.3270 S12: 0.4777 S13: -0.3570 REMARK 3 S21: -0.6146 S22: -0.3059 S23: 0.2593 REMARK 3 S31: 0.4726 S32: -0.0557 S33: -0.0138 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 89:110 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0333-117.2578 95.2293 REMARK 3 T TENSOR REMARK 3 T11: 1.1406 T22: 0.9665 REMARK 3 T33: 0.5051 T12: 0.4493 REMARK 3 T13: 0.0032 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 8.8334 L22: 4.9701 REMARK 3 L33: 4.0842 L12: 4.1479 REMARK 3 L13: -0.6733 L23: 0.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.4742 S12: 1.5419 S13: -0.0323 REMARK 3 S21: -1.7606 S22: -0.4334 S23: -0.1708 REMARK 3 S31: 1.1556 S32: 0.3947 S33: 0.1536 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 111:180 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4336-109.4606 104.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.5974 T22: 0.8965 REMARK 3 T33: 0.5907 T12: 0.2882 REMARK 3 T13: 0.0555 T23: 0.1940 REMARK 3 L TENSOR REMARK 3 L11: 4.8651 L22: 3.7172 REMARK 3 L33: 3.1495 L12: -1.6981 REMARK 3 L13: -0.2543 L23: -0.4573 REMARK 3 S TENSOR REMARK 3 S11: 0.2137 S12: 0.7032 S13: 0.1459 REMARK 3 S21: -0.6701 S22: -0.4574 S23: -0.8493 REMARK 3 S31: 0.3288 S32: 1.0278 S33: 0.0846 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 201 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8347-116.9235 103.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.6434 T22: 0.6905 REMARK 3 T33: 0.4447 T12: 0.2403 REMARK 3 T13: -0.0650 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 5.3867 L22: 5.2758 REMARK 3 L33: 3.6312 L12: -1.9429 REMARK 3 L13: -1.3733 L23: 1.8829 REMARK 3 S TENSOR REMARK 3 S11: 0.3847 S12: 0.8666 S13: -0.2728 REMARK 3 S21: -1.2159 S22: -0.3285 S23: 0.5524 REMARK 3 S31: 0.5451 S32: 0.1141 S33: -0.2081 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 43.007 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4U99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OBTAINED BY EQUILIBRATING A 2 UL DROP REMARK 280 OF 1:1 PROTEIN:RESERVOIR AGAINST A 700 UL RESERVOIR CONTAINING REMARK 280 1.6-1.9 M DL-MALIC ACID (PH 7.3). FOR CRYOPROTECTION, 2 UL OF REMARK 280 MOTHER LIQUOR CONTAINING 10% GLYCEROL WAS ADDED DIRECTLY TO THE REMARK 280 DROP AND CRYSTALS WERE SERIAL TRANSFERRED INTO MOTHER LIQUOR REMARK 280 SOLUTION CONTAINING 5, 7.5 AND 10% GLYCEROL. PRIOR TO FLASH REMARK 280 FREEZING IN LIQUID NITROGEN, CRYSTALS WERE TRANSFERRED UNDER A REMARK 280 LAYER OF OIL AND INCUBATED WITH CARBON MONOXIDE-SATURATED REMARK 280 CRYOPROTECTANT FOR 15-45 MINUTES. CRYSTAL GROWTH AND REMARK 280 MANIPULATION WAS PERFORMED ANAEROBICALLY., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.18300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.18300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.18300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.18300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.18300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.18300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 308 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 39 O HOH A 301 1.86 REMARK 500 OE2 GLU B 24 O HOH B 301 1.86 REMARK 500 FE HEM A 201 C CMO A 203 1.89 REMARK 500 O ASN A 183 O HOH A 377 2.01 REMARK 500 O HOH B 340 O HOH B 346 2.05 REMARK 500 O HOH A 357 O HOH A 361 2.10 REMARK 500 OE1 GLU B 24 O HOH B 302 2.14 REMARK 500 OE2 GLU B 24 O HOH B 303 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 101 -58.57 -124.09 REMARK 500 LEU A 138 40.87 -103.82 REMARK 500 TYR A 185 -95.71 -108.77 REMARK 500 VAL B 101 -57.87 -125.28 REMARK 500 ASN B 125 -165.08 60.36 REMARK 500 GLN B 179 -68.93 -141.09 REMARK 500 ASP B 181 -166.90 -161.74 REMARK 500 TYR B 185 -69.80 -95.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 103 NE2 REMARK 620 2 HEM A 201 NA 85.1 REMARK 620 3 HEM A 201 NB 89.8 94.5 REMARK 620 4 HEM A 201 NC 90.3 175.1 87.2 REMARK 620 5 HEM A 201 ND 87.9 85.8 177.6 92.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 HIS A 161 NE2 110.2 REMARK 620 3 CYS A 164 SG 108.8 104.5 REMARK 620 4 CYS A 172 SG 103.8 117.0 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 180 OD1 REMARK 620 2 ASP A 181 O 87.7 REMARK 620 3 LEU A 184 O 83.2 88.6 REMARK 620 4 HOH A 320 O 97.0 82.9 171.5 REMARK 620 5 HOH A 327 O 83.9 157.1 111.4 77.1 REMARK 620 6 HOH A 343 O 171.5 98.1 90.7 89.9 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 103 NE2 REMARK 620 2 HEM B 201 NA 92.7 REMARK 620 3 HEM B 201 NB 95.7 91.2 REMARK 620 4 HEM B 201 NC 93.9 173.4 89.2 REMARK 620 5 HEM B 201 ND 94.1 88.4 170.2 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 139 SG REMARK 620 2 HIS B 161 NE2 107.4 REMARK 620 3 CYS B 164 SG 116.2 105.2 REMARK 620 4 CYS B 172 SG 102.7 108.9 116.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U99 RELATED DB: PDB REMARK 900 RELATED ID: 4U9B RELATED DB: PDB REMARK 900 RELATED ID: 4U9J RELATED DB: PDB REMARK 900 RELATED ID: 4U9K RELATED DB: PDB REMARK 900 RELATED ID: 2KII RELATED DB: PDB REMARK 900 RELATED ID: 2KIL RELATED DB: PDB DBREF 4U9G A 1 181 UNP Q8EF49 Q8EF49_SHEON 1 181 DBREF 4U9G B 1 181 UNP Q8EF49 Q8EF49_SHEON 1 181 SEQADV 4U9G ALA A 154 UNP Q8EF49 GLN 154 ENGINEERED MUTATION SEQADV 4U9G ALA A 155 UNP Q8EF49 GLN 155 ENGINEERED MUTATION SEQADV 4U9G ALA A 156 UNP Q8EF49 LYS 156 ENGINEERED MUTATION SEQADV 4U9G GLU A 182 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G ASN A 183 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G LEU A 184 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G TYR A 185 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G PHE A 186 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G GLN A 187 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G ALA B 154 UNP Q8EF49 GLN 154 ENGINEERED MUTATION SEQADV 4U9G ALA B 155 UNP Q8EF49 GLN 155 ENGINEERED MUTATION SEQADV 4U9G ALA B 156 UNP Q8EF49 LYS 156 ENGINEERED MUTATION SEQADV 4U9G GLU B 182 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G ASN B 183 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G LEU B 184 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G TYR B 185 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G PHE B 186 UNP Q8EF49 EXPRESSION TAG SEQADV 4U9G GLN B 187 UNP Q8EF49 EXPRESSION TAG SEQRES 1 A 187 MET LYS GLY ILE ILE PHE ASN VAL LEU GLU ASP MET VAL SEQRES 2 A 187 VAL ALA GLN CYS GLY MET SER VAL TRP ASN GLU LEU LEU SEQRES 3 A 187 GLU LYS HIS ALA PRO LYS ASP ARG VAL TYR VAL SER ALA SEQRES 4 A 187 LYS SER TYR ALA GLU SER GLU LEU PHE SER ILE VAL GLN SEQRES 5 A 187 ASP VAL ALA GLN ARG LEU ASN MET PRO ILE GLN ASP VAL SEQRES 6 A 187 VAL LYS ALA PHE GLY GLN PHE LEU PHE ASN GLY LEU ALA SEQRES 7 A 187 SER ARG HIS THR ASP VAL VAL ASP LYS PHE ASP ASP PHE SEQRES 8 A 187 THR SER LEU VAL MET GLY ILE HIS ASP VAL ILE HIS LEU SEQRES 9 A 187 GLU VAL ASN LYS LEU TYR HIS GLU PRO SER LEU PRO HIS SEQRES 10 A 187 ILE ASN GLY GLN LEU LEU PRO ASN ASN GLN ILE ALA LEU SEQRES 11 A 187 ARG TYR SER SER PRO ARG ARG LEU CYS PHE CYS ALA GLU SEQRES 12 A 187 GLY LEU LEU PHE GLY ALA ALA GLN HIS PHE ALA ALA ALA SEQRES 13 A 187 ILE GLN ILE SER HIS ASP THR CYS MET HIS THR GLY ALA SEQRES 14 A 187 ASP HIS CYS MET LEU ILE ILE GLU LEU GLN ASN ASP GLU SEQRES 15 A 187 ASN LEU TYR PHE GLN SEQRES 1 B 187 MET LYS GLY ILE ILE PHE ASN VAL LEU GLU ASP MET VAL SEQRES 2 B 187 VAL ALA GLN CYS GLY MET SER VAL TRP ASN GLU LEU LEU SEQRES 3 B 187 GLU LYS HIS ALA PRO LYS ASP ARG VAL TYR VAL SER ALA SEQRES 4 B 187 LYS SER TYR ALA GLU SER GLU LEU PHE SER ILE VAL GLN SEQRES 5 B 187 ASP VAL ALA GLN ARG LEU ASN MET PRO ILE GLN ASP VAL SEQRES 6 B 187 VAL LYS ALA PHE GLY GLN PHE LEU PHE ASN GLY LEU ALA SEQRES 7 B 187 SER ARG HIS THR ASP VAL VAL ASP LYS PHE ASP ASP PHE SEQRES 8 B 187 THR SER LEU VAL MET GLY ILE HIS ASP VAL ILE HIS LEU SEQRES 9 B 187 GLU VAL ASN LYS LEU TYR HIS GLU PRO SER LEU PRO HIS SEQRES 10 B 187 ILE ASN GLY GLN LEU LEU PRO ASN ASN GLN ILE ALA LEU SEQRES 11 B 187 ARG TYR SER SER PRO ARG ARG LEU CYS PHE CYS ALA GLU SEQRES 12 B 187 GLY LEU LEU PHE GLY ALA ALA GLN HIS PHE ALA ALA ALA SEQRES 13 B 187 ILE GLN ILE SER HIS ASP THR CYS MET HIS THR GLY ALA SEQRES 14 B 187 ASP HIS CYS MET LEU ILE ILE GLU LEU GLN ASN ASP GLU SEQRES 15 B 187 ASN LEU TYR PHE GLN HET HEM A 201 73 HET ZN A 202 1 HET CMO A 203 2 HET NA A 204 1 HET HEM B 201 73 HET ZN B 202 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ZN ZINC ION HETNAM CMO CARBON MONOXIDE HETNAM NA SODIUM ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CMO C O FORMUL 6 NA NA 1+ FORMUL 9 HOH *138(H2 O) HELIX 1 AA1 LYS A 2 CYS A 17 1 16 HELIX 2 AA2 GLY A 18 ALA A 30 1 13 HELIX 3 AA3 ALA A 43 ASN A 59 1 17 HELIX 4 AA4 PRO A 61 HIS A 81 1 21 HELIX 5 AA5 HIS A 81 ASP A 86 1 6 HELIX 6 AA6 ASP A 90 GLY A 97 1 8 HELIX 7 AA7 VAL A 101 TYR A 110 1 10 HELIX 8 AA8 LEU A 138 PHE A 153 1 16 HELIX 9 AA9 CYS A 164 GLY A 168 5 5 HELIX 10 AB1 LYS B 2 GLY B 18 1 17 HELIX 11 AB2 GLY B 18 ALA B 30 1 13 HELIX 12 AB3 ALA B 43 LEU B 58 1 16 HELIX 13 AB4 PRO B 61 HIS B 81 1 21 HELIX 14 AB5 HIS B 81 ASP B 86 1 6 HELIX 15 AB6 ASP B 90 MET B 96 1 7 HELIX 16 AB7 VAL B 101 TYR B 110 1 10 HELIX 17 AB8 LEU B 138 PHE B 153 1 16 HELIX 18 AB9 CYS B 164 GLY B 168 5 5 SHEET 1 AA1 4 HIS A 117 LEU A 123 0 SHEET 2 AA1 4 GLN A 127 SER A 133 -1 O SER A 133 N HIS A 117 SHEET 3 AA1 4 CYS A 172 ASN A 180 -1 O ILE A 176 N ILE A 128 SHEET 4 AA1 4 ALA A 156 THR A 163 -1 N GLN A 158 O GLU A 177 SHEET 1 AA2 4 HIS B 117 LEU B 123 0 SHEET 2 AA2 4 GLN B 127 SER B 133 -1 O ARG B 131 N ASN B 119 SHEET 3 AA2 4 CYS B 172 ASN B 180 -1 O ILE B 176 N ILE B 128 SHEET 4 AA2 4 ALA B 156 THR B 163 -1 N GLN B 158 O GLU B 177 LINK NE2 HIS A 103 FE HEM A 201 1555 1555 2.21 LINK SG CYS A 139 ZN ZN A 202 1555 1555 2.32 LINK NE2 HIS A 161 ZN ZN A 202 1555 1555 2.03 LINK SG CYS A 164 ZN ZN A 202 1555 1555 2.32 LINK SG CYS A 172 ZN ZN A 202 1555 1555 2.32 LINK OD1 ASN A 180 NA NA A 204 1555 1555 2.42 LINK O ASP A 181 NA NA A 204 1555 1555 2.48 LINK O LEU A 184 NA NA A 204 1555 1555 2.24 LINK NA NA A 204 O HOH A 320 1555 1555 2.39 LINK NA NA A 204 O HOH A 327 1555 1555 2.59 LINK NA NA A 204 O HOH A 343 1555 1555 2.19 LINK NE2 HIS B 103 FE HEM B 201 1555 1555 2.36 LINK SG CYS B 139 ZN ZN B 202 1555 1555 2.39 LINK NE2 HIS B 161 ZN ZN B 202 1555 1555 2.08 LINK SG CYS B 164 ZN ZN B 202 1555 1555 2.32 LINK SG CYS B 172 ZN ZN B 202 1555 1555 2.28 SITE 1 AC1 17 MET A 1 LYS A 2 HIS A 81 ILE A 102 SITE 2 AC1 17 HIS A 103 VAL A 106 PRO A 113 SER A 114 SITE 3 AC1 17 LEU A 115 PRO A 116 TYR A 132 SER A 134 SITE 4 AC1 17 ARG A 136 LEU A 138 LEU A 146 CMO A 203 SITE 5 AC1 17 HOH A 338 SITE 1 AC2 4 CYS A 139 HIS A 161 CYS A 164 CYS A 172 SITE 1 AC3 4 LEU A 73 LEU A 77 LEU A 145 HEM A 201 SITE 1 AC4 6 ASN A 180 ASP A 181 LEU A 184 HOH A 320 SITE 2 AC4 6 HOH A 327 HOH A 343 SITE 1 AC5 19 MET B 1 LYS B 2 LEU B 77 HIS B 81 SITE 2 AC5 19 ILE B 98 ILE B 102 HIS B 103 VAL B 106 SITE 3 AC5 19 PRO B 113 SER B 114 LEU B 115 PRO B 116 SITE 4 AC5 19 TYR B 132 SER B 134 ARG B 136 LEU B 138 SITE 5 AC5 19 LEU B 145 HOH B 325 HOH B 331 SITE 1 AC6 4 CYS B 139 HIS B 161 CYS B 164 CYS B 172 CRYST1 164.173 164.173 102.366 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006091 0.003517 0.000000 0.00000 SCALE2 0.000000 0.007033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009769 0.00000