HEADER ISOMERASE 01-JUL-14 4TWR TITLE STRUCTURE OF UDP-GLUCOSE 4-EPIMERASE FROM BRUCELLA ABORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD BINDING SITE:NAD-DEPENDENT EPIMERASE/DEHYDRATASE:UDP- COMPND 3 GLUCOSE 4-EPIMERASE; COMPND 4 CHAIN: A; COMPND 5 EC: 5.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: GALE-2, BAB2_0694; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.S.HORANYI,J.ABENDROTH,D.LORIMER,T.EDWARDS,SEATTLE STRUCTURAL AUTHOR 2 GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-DEC-23 4TWR 1 REMARK REVDAT 3 11-DEC-19 4TWR 1 REMARK REVDAT 2 20-SEP-17 4TWR 1 SOURCE REMARK REVDAT 1 08-OCT-14 4TWR 0 JRNL AUTH P.S.HORANYI,J.ABENDROTH,D.LORIMER,T.EDWARDS JRNL TITL STRUCTURE OF UDP-GLUCOSE 4-EPIMERASE FROM BRUCELLA JRNL TITL 2 MELITENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1769) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9951 - 4.5730 0.99 2371 152 0.1487 0.1779 REMARK 3 2 4.5730 - 3.6322 1.00 2276 145 0.1458 0.1716 REMARK 3 3 3.6322 - 3.1738 1.00 2256 144 0.1765 0.2019 REMARK 3 4 3.1738 - 2.8840 1.00 2241 143 0.1909 0.2054 REMARK 3 5 2.8840 - 2.6774 1.00 2224 142 0.1906 0.2137 REMARK 3 6 2.6774 - 2.5197 1.00 2237 143 0.1873 0.2616 REMARK 3 7 2.5197 - 2.3936 1.00 2222 142 0.1870 0.2098 REMARK 3 8 2.3936 - 2.2894 1.00 2243 143 0.1946 0.2537 REMARK 3 9 2.2894 - 2.2013 1.00 2204 141 0.1995 0.2529 REMARK 3 10 2.2013 - 2.1254 1.00 2210 141 0.2075 0.2753 REMARK 3 11 2.1254 - 2.0590 1.00 2219 142 0.2214 0.2751 REMARK 3 12 2.0590 - 2.0001 1.00 2201 140 0.2294 0.2933 REMARK 3 13 2.0001 - 1.9475 1.00 2198 141 0.2367 0.2603 REMARK 3 14 1.9475 - 1.9000 1.00 2218 140 0.2459 0.3428 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.039 2549 REMARK 3 ANGLE : 1.118 3475 REMARK 3 CHIRALITY : 0.044 393 REMARK 3 PLANARITY : 0.005 454 REMARK 3 DIHEDRAL : 12.943 892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:64) REMARK 3 ORIGIN FOR THE GROUP (A): -11.332 -4.591 -18.678 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.3204 REMARK 3 T33: 0.2327 T12: 0.0111 REMARK 3 T13: -0.0051 T23: -0.1313 REMARK 3 L TENSOR REMARK 3 L11: 2.6440 L22: 1.8763 REMARK 3 L33: 1.5535 L12: 0.3165 REMARK 3 L13: 0.7532 L23: -0.3993 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.5538 S13: -0.0955 REMARK 3 S21: -0.0642 S22: -0.2030 S23: 0.1715 REMARK 3 S31: 0.1203 S32: -0.4523 S33: 0.1944 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 65:149) REMARK 3 ORIGIN FOR THE GROUP (A): -4.880 -16.431 -8.907 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.2358 REMARK 3 T33: 0.3860 T12: -0.0092 REMARK 3 T13: 0.0512 T23: -0.1014 REMARK 3 L TENSOR REMARK 3 L11: 0.6580 L22: 1.4799 REMARK 3 L33: 1.8148 L12: 0.7492 REMARK 3 L13: 0.3638 L23: 0.4527 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.3418 S13: -0.6860 REMARK 3 S21: -0.0779 S22: -0.1640 S23: 0.0228 REMARK 3 S31: 0.3453 S32: -0.0243 S33: 0.1421 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 150:169) REMARK 3 ORIGIN FOR THE GROUP (A): -12.657 -18.589 -2.903 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.2172 REMARK 3 T33: 0.4228 T12: -0.0917 REMARK 3 T13: 0.0604 T23: -0.0770 REMARK 3 L TENSOR REMARK 3 L11: 1.0759 L22: 3.8205 REMARK 3 L33: 7.0347 L12: -0.5477 REMARK 3 L13: -0.0354 L23: 4.6297 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: 0.2177 S13: -0.7308 REMARK 3 S21: 0.0421 S22: -0.1694 S23: 0.2563 REMARK 3 S31: 0.5286 S32: -0.4836 S33: 0.2584 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 170:268) REMARK 3 ORIGIN FOR THE GROUP (A): -1.807 -22.999 -26.111 REMARK 3 T TENSOR REMARK 3 T11: 0.4540 T22: 0.5545 REMARK 3 T33: 0.5377 T12: 0.0038 REMARK 3 T13: 0.0830 T23: -0.5359 REMARK 3 L TENSOR REMARK 3 L11: 0.8162 L22: 0.5161 REMARK 3 L33: 1.3616 L12: 0.1587 REMARK 3 L13: -0.5041 L23: 0.0643 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: 0.4453 S13: -0.5045 REMARK 3 S21: -0.0871 S22: -0.0522 S23: -0.0040 REMARK 3 S31: 0.4244 S32: 0.0614 S33: 0.0803 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 269:289) REMARK 3 ORIGIN FOR THE GROUP (A): 10.882 -27.749 -30.965 REMARK 3 T TENSOR REMARK 3 T11: 0.6485 T22: 0.7927 REMARK 3 T33: 0.6276 T12: 0.0244 REMARK 3 T13: 0.1312 T23: -0.4344 REMARK 3 L TENSOR REMARK 3 L11: 1.2493 L22: 1.3037 REMARK 3 L33: 3.2678 L12: 0.0499 REMARK 3 L13: -0.5855 L23: -0.4197 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.0343 S13: -0.1647 REMARK 3 S21: 0.1158 S22: -0.1473 S23: 0.0635 REMARK 3 S31: 0.1685 S32: 0.1291 S33: 0.1398 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 290:327) REMARK 3 ORIGIN FOR THE GROUP (A): -7.431 -23.279 -27.041 REMARK 3 T TENSOR REMARK 3 T11: 0.4065 T22: 0.3901 REMARK 3 T33: 0.4092 T12: -0.0540 REMARK 3 T13: 0.0891 T23: -0.6951 REMARK 3 L TENSOR REMARK 3 L11: 0.1212 L22: 1.7048 REMARK 3 L33: 1.3873 L12: 0.1921 REMARK 3 L13: 0.4264 L23: 0.8884 REMARK 3 S TENSOR REMARK 3 S11: -0.0832 S12: 0.8229 S13: -0.7847 REMARK 3 S21: -0.4928 S22: -0.1429 S23: 0.1099 REMARK 3 S31: 0.6563 S32: -0.2223 S33: 0.1828 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33325 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM ACETATE, 25% PEG 3350, REMARK 280 100MM BIS-TRIS PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.05500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.26500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.05500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.26500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.30000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.05500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.26500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.30000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.05500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 540 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 569 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 573 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 312 CG OD1 OD2 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 594 O HOH A 669 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -159.99 -102.88 REMARK 500 PHE A 171 -70.86 -93.26 REMARK 500 PRO A 217 -175.89 -68.28 REMARK 500 ASP A 218 -47.86 62.99 REMARK 500 GLU A 244 38.13 -87.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE2 REMARK 620 2 HIS A 186 ND1 103.5 REMARK 620 3 GLU A 189 OE2 111.2 127.3 REMARK 620 4 HIS A 191 ND1 93.7 115.2 101.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 DBREF 4TWR A 1 328 UNP Q2YKG6 Q2YKG6_BRUA2 1 328 SEQADV 4TWR MET A -7 UNP Q2YKG6 INITIATING METHIONINE SEQADV 4TWR ALA A -6 UNP Q2YKG6 EXPRESSION TAG SEQADV 4TWR HIS A -5 UNP Q2YKG6 EXPRESSION TAG SEQADV 4TWR HIS A -4 UNP Q2YKG6 EXPRESSION TAG SEQADV 4TWR HIS A -3 UNP Q2YKG6 EXPRESSION TAG SEQADV 4TWR HIS A -2 UNP Q2YKG6 EXPRESSION TAG SEQADV 4TWR HIS A -1 UNP Q2YKG6 EXPRESSION TAG SEQADV 4TWR HIS A 0 UNP Q2YKG6 EXPRESSION TAG SEQRES 1 A 336 MET ALA HIS HIS HIS HIS HIS HIS MET SER ALA ASN ASN SEQRES 2 A 336 VAL LEU VAL VAL GLY GLY ALA GLY PHE ILE GLY SER HIS SEQRES 3 A 336 THR ALA LYS LEU LEU ALA GLY GLN GLY TYR ALA PRO VAL SEQRES 4 A 336 VAL TYR ASP ASN LEU SER THR GLY HIS GLN SER ALA VAL SEQRES 5 A 336 ARG TRP GLY ASP PHE VAL GLU GLY ASP ILE LEU ASP GLN SEQRES 6 A 336 ALA ARG LEU VAL GLU THR MET GLU LYS TYR ALA PRO VAL SEQRES 7 A 336 ALA VAL ILE HIS PHE ALA ALA SER ALA TYR VAL GLY GLU SEQRES 8 A 336 SER VAL GLU ASP PRO ALA LYS TYR TYR ARG ASN ASN VAL SEQRES 9 A 336 GLY GLY THR GLN SER LEU LEU ASP ALA CYS ARG LEU THR SEQRES 10 A 336 ARG THR GLN ASN VAL ILE PHE SER SER SER CYS ALA THR SEQRES 11 A 336 TYR GLY VAL PRO SER ARG LEU PRO ILE GLY GLU GLY GLU SEQRES 12 A 336 ALA GLN ASN PRO ILE ASN PRO TYR GLY ARG THR LYS LEU SEQRES 13 A 336 ILE ALA GLU HIS MET LEU ALA ASP TYR ALA VAL ALA TYR SEQRES 14 A 336 GLY LEU ARG TYR VAL ALA LEU ARG TYR PHE ASN ALA SER SEQRES 15 A 336 GLY ALA ASP ILE ASP GLY GLU LEU GLY GLU LYS HIS ASP SEQRES 16 A 336 PRO GLU THR HIS LEU ILE PRO ARG ALA MET MET ALA ALA SEQRES 17 A 336 ALA GLY ARG LEU ASP VAL LEU GLU VAL TYR GLY ASP ASP SEQRES 18 A 336 TYR GLU THR PRO ASP GLY THR CYS ILE ARG ASP TYR ILE SEQRES 19 A 336 HIS VAL THR ASP LEU ALA ARG ALA HIS VAL LEU ALA VAL SEQRES 20 A 336 GLU HIS LEU LYS GLU ALA GLY GLY ASN LEU ALA VAL ASN SEQRES 21 A 336 LEU GLY THR GLY ARG GLY THR SER ILE ARG GLU ILE VAL SEQRES 22 A 336 GLN SER ILE GLY ARG LEU THR GLY ARG SER VAL PRO VAL SEQRES 23 A 336 ALA MET ARG ALA ARG ARG ALA GLY ASP PRO PRO ALA LEU SEQRES 24 A 336 TYR ALA ASP PRO ALA LEU ALA ALA GLU LYS LEU GLY PHE SEQRES 25 A 336 HIS THR VAL TYR SER ASP LEU ASP THR ILE ILE ARG THR SEQRES 26 A 336 ALA ALA PRO HIS PHE GLY LEU GLU VAL ARG GLY HET NAD A 400 44 HET ZN A 401 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ZN ZINC ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *205(H2 O) HELIX 1 AA1 GLY A 13 GLN A 26 1 14 HELIX 2 AA2 HIS A 40 VAL A 44 5 5 HELIX 3 AA3 ASP A 56 ALA A 68 1 13 HELIX 4 AA4 GLY A 82 GLU A 86 5 5 HELIX 5 AA5 ASP A 87 VAL A 96 1 10 HELIX 6 AA6 VAL A 96 THR A 109 1 14 HELIX 7 AA7 SER A 119 TYR A 123 5 5 HELIX 8 AA8 ASN A 141 GLY A 162 1 22 HELIX 9 AA9 HIS A 191 ALA A 201 1 11 HELIX 10 AB1 VAL A 228 GLU A 244 1 17 HELIX 11 AB2 ILE A 261 GLY A 273 1 13 HELIX 12 AB3 PRO A 295 GLY A 303 1 9 HELIX 13 AB4 ASP A 310 ALA A 319 1 10 HELIX 14 AB5 PRO A 320 GLY A 323 5 4 SHEET 1 AA1 7 PHE A 49 GLU A 51 0 SHEET 2 AA1 7 ALA A 29 ASP A 34 1 N VAL A 32 O VAL A 50 SHEET 3 AA1 7 ASN A 5 VAL A 9 1 N VAL A 6 O VAL A 31 SHEET 4 AA1 7 ALA A 71 HIS A 74 1 O ILE A 73 N LEU A 7 SHEET 5 AA1 7 ASN A 113 SER A 117 1 O ILE A 115 N VAL A 72 SHEET 6 AA1 7 ARG A 164 ARG A 169 1 O ARG A 164 N VAL A 114 SHEET 7 AA1 7 LEU A 249 ASN A 252 1 O LEU A 249 N ALA A 167 SHEET 1 AA2 2 ASN A 172 SER A 174 0 SHEET 2 AA2 2 TYR A 225 HIS A 227 1 O ILE A 226 N ASN A 172 SHEET 1 AA3 2 LEU A 207 TYR A 210 0 SHEET 2 AA3 2 VAL A 278 ARG A 281 1 O ARG A 281 N VAL A 209 SHEET 1 AA4 2 ILE A 222 ARG A 223 0 SHEET 2 AA4 2 THR A 259 SER A 260 -1 O THR A 259 N ARG A 223 LINK OE2 GLU A 184 ZN ZN A 401 1555 1555 2.02 LINK ND1 HIS A 186 ZN ZN A 401 1555 1555 2.06 LINK OE2 GLU A 189 ZN ZN A 401 1555 1555 1.98 LINK ND1 HIS A 191 ZN ZN A 401 1555 1555 1.97 CISPEP 1 LEU A 129 PRO A 130 0 -6.06 CISPEP 2 ASP A 187 PRO A 188 0 1.92 SITE 1 AC1 36 GLY A 10 ALA A 12 GLY A 13 PHE A 14 SITE 2 AC1 36 ILE A 15 ASP A 34 ASN A 35 LEU A 36 SITE 3 AC1 36 SER A 37 THR A 38 GLY A 39 GLY A 52 SITE 4 AC1 36 ASP A 53 ILE A 54 PHE A 75 ALA A 76 SITE 5 AC1 36 ALA A 77 SER A 78 ASN A 94 SER A 117 SITE 6 AC1 36 SER A 118 TYR A 143 LYS A 147 TYR A 170 SITE 7 AC1 36 PHE A 171 ASN A 172 ALA A 173 HIS A 186 SITE 8 AC1 36 HOH A 575 HOH A 579 HOH A 583 HOH A 586 SITE 9 AC1 36 HOH A 587 HOH A 593 HOH A 673 HOH A 682 SITE 1 AC2 4 GLU A 184 HIS A 186 GLU A 189 HIS A 191 CRYST1 76.600 86.110 126.530 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007903 0.00000