HEADER TRANSPORT PROTEIN 22-APR-14 4Q6B TITLE CRYSTAL STRUCTURE OF ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN TITLE 2 FROMDESULFITOBACTERIUM HAFNIENSE COMPLEX WITH LEU COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR LIGAND-BINDING RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2; SOURCE 5 GENE: DHAF_0110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ALPHA-BETA FOLD, SBP, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.CHHOR,M.ENDRES,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 06-DEC-23 4Q6B 1 REMARK REVDAT 2 20-SEP-23 4Q6B 1 REMARK SEQADV LINK REVDAT 1 02-JUL-14 4Q6B 0 JRNL AUTH Y.KIM,G.CHHOR,M.ENDRES,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF ABC TRANSPORTER SUBSTRATE-BINDING JRNL TITL 2 PROTEIN FROMDESULFITOBACTERIUM HAFNIENSE COMPLEX WITH LEU JRNL REF TO BE PUBLISHED 2014 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 35607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0972 - 3.9173 0.99 2719 143 0.1543 0.1704 REMARK 3 2 3.9173 - 3.1102 1.00 2676 137 0.1564 0.1929 REMARK 3 3 3.1102 - 2.7173 1.00 2660 130 0.1751 0.2411 REMARK 3 4 2.7173 - 2.4690 1.00 2634 140 0.1649 0.2068 REMARK 3 5 2.4690 - 2.2921 1.00 2650 148 0.1687 0.1843 REMARK 3 6 2.2921 - 2.1570 1.00 2617 135 0.1675 0.1964 REMARK 3 7 2.1570 - 2.0490 1.00 2612 150 0.1679 0.2249 REMARK 3 8 2.0490 - 1.9598 1.00 2618 153 0.1800 0.2431 REMARK 3 9 1.9598 - 1.8844 1.00 2650 122 0.1779 0.2273 REMARK 3 10 1.8844 - 1.8194 1.00 2626 128 0.1910 0.2688 REMARK 3 11 1.8194 - 1.7625 1.00 2597 150 0.1913 0.2422 REMARK 3 12 1.7625 - 1.7121 0.98 2554 131 0.2085 0.2255 REMARK 3 13 1.7121 - 1.6670 0.84 2210 117 0.2104 0.2432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2740 REMARK 3 ANGLE : 1.481 3717 REMARK 3 CHIRALITY : 0.103 395 REMARK 3 PLANARITY : 0.008 500 REMARK 3 DIHEDRAL : 14.439 997 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3539 -5.9861 15.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.1004 REMARK 3 T33: 0.1208 T12: 0.0099 REMARK 3 T13: 0.0329 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.8157 L22: 2.8463 REMARK 3 L33: 2.3705 L12: 0.6540 REMARK 3 L13: 0.3166 L23: -0.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.1192 S13: -0.0139 REMARK 3 S21: -0.1449 S22: 0.0081 S23: -0.3700 REMARK 3 S31: -0.0055 S32: 0.1650 S33: -0.0109 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6510 -5.3583 21.7003 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.1453 REMARK 3 T33: 0.1214 T12: -0.0084 REMARK 3 T13: 0.0191 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.9420 L22: 0.9039 REMARK 3 L33: 0.4127 L12: -1.5837 REMARK 3 L13: 0.9837 L23: -0.4612 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: -0.0797 S13: -0.0025 REMARK 3 S21: 0.0774 S22: 0.0610 S23: 0.0140 REMARK 3 S31: -0.0247 S32: -0.0952 S33: -0.0223 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2794 2.1060 7.0893 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.1631 REMARK 3 T33: 0.1386 T12: 0.0161 REMARK 3 T13: -0.0315 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.6426 L22: 2.1111 REMARK 3 L33: 1.7787 L12: 1.0429 REMARK 3 L13: 1.2030 L23: 1.0648 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.2544 S13: -0.0822 REMARK 3 S21: -0.2415 S22: 0.1023 S23: 0.0691 REMARK 3 S31: 0.1392 S32: 0.0730 S33: -0.0339 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5439 13.5121 12.3321 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1108 REMARK 3 T33: 0.2135 T12: -0.0114 REMARK 3 T13: 0.0063 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 5.4143 L22: 6.2747 REMARK 3 L33: 7.6980 L12: -0.1975 REMARK 3 L13: -4.3126 L23: 3.8573 REMARK 3 S TENSOR REMARK 3 S11: 0.1750 S12: 0.0170 S13: 0.4683 REMARK 3 S21: -0.3968 S22: 0.1148 S23: -0.5889 REMARK 3 S31: -0.4597 S32: 0.3766 S33: -0.2823 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0225 3.6879 23.5564 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1286 REMARK 3 T33: 0.1253 T12: -0.0017 REMARK 3 T13: 0.0183 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 2.5091 L22: 2.3928 REMARK 3 L33: 1.4890 L12: -1.0276 REMARK 3 L13: 0.8920 L23: -0.8521 REMARK 3 S TENSOR REMARK 3 S11: -0.1552 S12: -0.1332 S13: 0.1952 REMARK 3 S21: 0.2278 S22: 0.0803 S23: 0.0321 REMARK 3 S31: -0.2310 S32: -0.1668 S33: 0.0824 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.667 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12600 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44200 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 4MLC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 20 % PEG3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.38250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLN A 1 REMARK 465 VAL A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 LEU A 233 REMARK 465 SER A 234 REMARK 465 LEU A 235 REMARK 465 THR A 236 REMARK 465 GLU A 237 REMARK 465 ASP A 238 REMARK 465 ILE A 239 REMARK 465 GLU A 240 REMARK 465 ASN A 241 REMARK 465 ILE A 242 REMARK 465 GLY A 243 REMARK 465 GLY A 352 REMARK 465 HIS A 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 56.56 -95.38 REMARK 500 GLU A 53 23.74 49.93 REMARK 500 GLU A 140 -31.23 -131.47 REMARK 500 SER A 253 -155.56 -152.96 REMARK 500 PHE A 255 114.64 79.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 94 O REMARK 620 2 HOH A 529 O 74.4 REMARK 620 3 HOH A 551 O 92.4 109.4 REMARK 620 4 HOH A 669 O 149.8 84.4 74.4 REMARK 620 5 HOH A 677 O 91.2 158.1 87.2 114.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 167 O REMARK 620 2 HOH A 503 O 75.2 REMARK 620 3 HOH A 504 O 74.1 108.3 REMARK 620 4 HOH A 505 O 77.6 89.6 140.9 REMARK 620 5 HOH A 657 O 136.8 80.4 148.4 67.0 REMARK 620 6 HOH A 683 O 133.5 83.1 74.6 143.5 76.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 172 OD1 REMARK 620 2 ARG A 173 O 83.7 REMARK 620 3 HOH A 501 O 76.7 96.9 REMARK 620 4 HOH A 502 O 79.4 160.3 89.1 REMARK 620 5 HOH A 554 O 146.8 85.9 136.0 102.8 REMARK 620 6 HOH A 672 O 70.0 78.9 146.7 85.8 77.1 REMARK 620 7 HOH A 673 O 152.3 94.1 76.2 105.6 59.8 136.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LEU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MLC RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT THE LIGAND REMARK 900 RELATED ID: MCSG-APC110486 RELATED DB: TARGETTRACK DBREF 4Q6B A 1 353 UNP B8FZ96 B8FZ96_DESHD 28 380 SEQADV 4Q6B SER A -2 UNP B8FZ96 EXPRESSION TAG SEQADV 4Q6B ASN A -1 UNP B8FZ96 EXPRESSION TAG SEQADV 4Q6B ALA A 0 UNP B8FZ96 EXPRESSION TAG SEQRES 1 A 356 SER ASN ALA GLN VAL ASN PRO SER GLU GLU ILE PHE ILE SEQRES 2 A 356 GLY VAL ALA TRP PRO PHE ALA SER LEU ASP ASP LEU PHE SEQRES 3 A 356 ALA GLU GLY LEU GLU LEU ALA VAL GLN GLU ILE ASN GLU SEQRES 4 A 356 GLN GLY GLY VAL GLN GLY ARG LYS LEU SER LEU VAL LYS SEQRES 5 A 356 ALA ASP ASP GLU ALA GLU LEU GLU LYS GLY LEU ALA ILE SEQRES 6 A 356 ALA GLN ALA PHE ALA ASP ASN ALA GLY ILE GLN ALA VAL SEQRES 7 A 356 ILE GLY HIS ARG ASN SER PHE ILE SER ILE PRO ALA ALA SEQRES 8 A 356 SER ILE TYR ASP GLN ALA GLY LEU VAL MSE LEU SER PRO SEQRES 9 A 356 ALA SER THR SER PRO ASP LEU THR ASP HIS GLY TYR ILE SEQRES 10 A 356 HIS VAL PHE ARG ASN ILE PRO SER ASP GLN GLU ILE ALA SEQRES 11 A 356 ARG GLN LEU ALA ILE TYR LEU ALA GLU GLN GLY HIS GLU SEQRES 12 A 356 ARG MSE VAL ILE TYR TYR THR ASP ASP SER TYR GLY ASN SEQRES 13 A 356 GLY LEU ALA ASN ALA PHE GLU ASP TYR ALA ARG ALA GLN SEQRES 14 A 356 GLY ILE THR ILE VAL ASP ARG PHE ASN TYR TYR GLY ASN SEQRES 15 A 356 LEU LYS ASP LEU GLU ARG LEU TYR ASP LYS TRP GLN ALA SEQRES 16 A 356 PHE GLY MSE ASP GLY ILE PHE ILE ALA LYS THR ALA THR SEQRES 17 A 356 GLY GLY GLY THR GLU PHE LEU VAL ASP ALA LYS SER VAL SEQRES 18 A 356 GLY ILE GLU VAL PRO LEU ILE ALA GLY ASN SER TRP ASP SEQRES 19 A 356 ALA LEU SER LEU THR GLU ASP ILE GLU ASN ILE GLY MSE SEQRES 20 A 356 THR ALA GLU GLY LEU LEU VAL GLY SER PHE PHE ASN PRO SEQRES 21 A 356 GLN ARG PRO ASP SER ARG THR GLN ASP PHE VAL GLU ALA SEQRES 22 A 356 PHE ARG ARG GLU TYR GLY GLN PRO PRO THR SER TYR ALA SEQRES 23 A 356 ALA ALA GLY TYR ASP ALA VAL ILE LEU LEU ALA GLU ALA SEQRES 24 A 356 LEU GLU LYS SER ASP LEU THR HIS PRO ALA THR LEU ALA SEQRES 25 A 356 GLN GLY LEU ARG ASP LEU GLY PRO TRP GLU GLY VAL MSE SEQRES 26 A 356 GLY MSE HIS ARG PHE ASP GLY ARG GLY ASP ASP ILE GLY SEQRES 27 A 356 ASP LEU VAL VAL LEU LYS LYS MSE LYS ASP GLY ARG PHE SEQRES 28 A 356 GLU TYR LEU GLY HIS MODRES 4Q6B MSE A 98 MET SELENOMETHIONINE MODRES 4Q6B MSE A 142 MET SELENOMETHIONINE MODRES 4Q6B MSE A 195 MET SELENOMETHIONINE MODRES 4Q6B MSE A 244 MET SELENOMETHIONINE MODRES 4Q6B MSE A 322 MET SELENOMETHIONINE MODRES 4Q6B MSE A 324 MET SELENOMETHIONINE MODRES 4Q6B MSE A 343 MET SELENOMETHIONINE HET MSE A 98 8 HET MSE A 142 8 HET MSE A 195 8 HET MSE A 244 8 HET MSE A 322 8 HET MSE A 324 16 HET MSE A 343 8 HET LEU A 401 9 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET EDO A 405 4 HET EDO A 406 4 HETNAM MSE SELENOMETHIONINE HETNAM LEU LEUCINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 LEU C6 H13 N O2 FORMUL 3 CA 3(CA 2+) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *198(H2 O) HELIX 1 1 LEU A 22 GLN A 37 1 16 HELIX 2 2 GLU A 55 ASP A 68 1 14 HELIX 3 3 ASN A 80 GLY A 95 1 16 HELIX 4 4 SER A 105 ASP A 110 5 6 HELIX 5 5 SER A 122 GLN A 137 1 16 HELIX 6 6 ASP A 149 GLN A 166 1 18 HELIX 7 7 ASN A 179 PHE A 193 1 15 HELIX 8 8 GLY A 207 GLY A 219 1 13 HELIX 9 9 ASN A 228 ASP A 231 5 4 HELIX 10 10 ASP A 261 GLY A 276 1 16 HELIX 11 11 THR A 280 LYS A 299 1 20 HELIX 12 12 HIS A 304 ALA A 306 5 3 HELIX 13 13 THR A 307 LEU A 315 1 9 SHEET 1 A 5 LYS A 44 ASP A 51 0 SHEET 2 A 5 GLU A 7 TRP A 14 1 N VAL A 12 O ALA A 50 SHEET 3 A 5 ILE A 72 ILE A 76 1 O GLN A 73 N PHE A 9 SHEET 4 A 5 MSE A 98 SER A 100 1 O LEU A 99 N VAL A 75 SHEET 5 A 5 VAL A 116 ARG A 118 1 O PHE A 117 N MSE A 98 SHEET 1 B 7 THR A 169 PHE A 174 0 SHEET 2 B 7 ARG A 141 TYR A 146 1 N MSE A 142 O THR A 169 SHEET 3 B 7 GLY A 197 ALA A 201 1 O ALA A 201 N TYR A 145 SHEET 4 B 7 LEU A 224 ALA A 226 1 O ILE A 225 N ILE A 200 SHEET 5 B 7 LEU A 250 PHE A 254 1 O LEU A 250 N ALA A 226 SHEET 6 B 7 VAL A 338 LYS A 344 -1 O LYS A 341 N VAL A 251 SHEET 7 B 7 ARG A 347 TYR A 350 -1 O ARG A 347 N LYS A 344 SHEET 1 C 2 TRP A 318 GLY A 320 0 SHEET 2 C 2 GLY A 323 HIS A 325 -1 O HIS A 325 N TRP A 318 LINK C VAL A 97 N MSE A 98 1555 1555 1.34 LINK C MSE A 98 N LEU A 99 1555 1555 1.33 LINK C ARG A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N VAL A 143 1555 1555 1.33 LINK C GLY A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N ASP A 196 1555 1555 1.34 LINK C MSE A 244 N THR A 245 1555 1555 1.33 LINK C VAL A 321 N MSE A 322 1555 1555 1.33 LINK C MSE A 322 N GLY A 323 1555 1555 1.33 LINK C GLY A 323 N AMSE A 324 1555 1555 1.33 LINK C GLY A 323 N BMSE A 324 1555 1555 1.34 LINK C AMSE A 324 N HIS A 325 1555 1555 1.33 LINK C BMSE A 324 N HIS A 325 1555 1555 1.34 LINK C LYS A 342 N MSE A 343 1555 1555 1.34 LINK C MSE A 343 N LYS A 344 1555 1555 1.33 LINK O ALA A 94 CA CA A 402 1555 1555 2.55 LINK O GLY A 167 CA CA A 403 1555 1555 2.39 LINK OD1 ASP A 172 CA CA A 404 1555 1555 2.44 LINK O ARG A 173 CA CA A 404 1555 1555 2.34 LINK CA CA A 402 O HOH A 529 1555 1555 2.32 LINK CA CA A 402 O HOH A 551 1555 1555 2.55 LINK CA CA A 402 O HOH A 669 1555 1555 2.42 LINK CA CA A 402 O HOH A 677 1555 1555 2.15 LINK CA CA A 403 O HOH A 503 1555 1555 2.59 LINK CA CA A 403 O HOH A 504 1555 1555 2.10 LINK CA CA A 403 O HOH A 505 1555 1555 2.84 LINK CA CA A 403 O HOH A 657 1555 1555 2.52 LINK CA CA A 403 O HOH A 683 1555 1555 2.50 LINK CA CA A 404 O HOH A 501 1555 1555 2.37 LINK CA CA A 404 O HOH A 502 1555 1555 2.15 LINK CA CA A 404 O HOH A 554 1555 1555 2.26 LINK CA CA A 404 O HOH A 672 1555 1555 2.43 LINK CA CA A 404 O HOH A 673 1555 1555 2.79 CISPEP 1 GLY A 77 HIS A 78 0 -11.98 SITE 1 AC1 9 ARG A 79 ASN A 80 SER A 81 ALA A 102 SITE 2 AC1 9 SER A 103 THR A 104 ASN A 228 TYR A 282 SITE 3 AC1 9 HOH A 602 SITE 1 AC2 5 ALA A 94 HOH A 529 HOH A 551 HOH A 669 SITE 2 AC2 5 HOH A 677 SITE 1 AC3 6 GLY A 167 HOH A 503 HOH A 504 HOH A 505 SITE 2 AC3 6 HOH A 657 HOH A 683 SITE 1 AC4 7 ASP A 172 ARG A 173 HOH A 501 HOH A 502 SITE 2 AC4 7 HOH A 554 HOH A 672 HOH A 673 SITE 1 AC5 1 ASN A 69 SITE 1 AC6 7 LEU A 155 THR A 203 GLY A 227 ASN A 228 SITE 2 AC6 7 SER A 229 HOH A 619 HOH A 697 CRYST1 60.425 42.765 63.577 90.00 108.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016549 0.000000 0.005682 0.00000 SCALE2 0.000000 0.023384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016630 0.00000