HEADER SIGNALING PROTEIN 18-JUN-13 4L9M TITLE AUTOINHIBITED STATE OF THE RAS-SPECIFIC EXCHANGE FACTOR RASGRP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GUANYL-RELEASING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALCIUM AND DAG-REGULATED GUANINE NUCLEOTIDE EXCHANGE FACTOR COMPND 5 II, CALDAG-GEFII, RAS GUANYL-RELEASING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RASGRP1, RASGRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS NUCLEOTIDE EXCHANGE FACTOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.S.IWIG,Y.VERCOULEN,R.DAS,T.BARROS,A.LIMNANDER,Y.CHE,J.G.PELTON, AUTHOR 2 D.E.WEMMER,J.P.ROOSE,J.KURIYAN REVDAT 2 20-SEP-23 4L9M 1 REMARK SEQADV LINK REVDAT 1 21-AUG-13 4L9M 0 JRNL AUTH J.S.IWIG,Y.VERCOULEN,R.DAS,T.BARROS,A.LIMNANDER,Y.CHE, JRNL AUTH 2 J.G.PELTON,D.E.WEMMER,J.P.ROOSE,J.KURIYAN JRNL TITL STRUCTURAL ANALYSIS OF AUTOINHIBITION IN THE RAS-SPECIFIC JRNL TITL 2 EXCHANGE FACTOR RASGRP1. JRNL REF ELIFE V. 2 00813 2013 JRNL REFN ESSN 2050-084X JRNL PMID 23908768 JRNL DOI 10.7554/ELIFE.00813 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4414 - 6.4585 0.98 2506 112 0.1841 0.2292 REMARK 3 2 6.4585 - 5.1283 0.99 2486 137 0.2355 0.2902 REMARK 3 3 5.1283 - 4.4806 1.00 2541 123 0.1888 0.2444 REMARK 3 4 4.4806 - 4.0712 1.00 2548 136 0.1912 0.2272 REMARK 3 5 4.0712 - 3.7795 1.00 2532 121 0.2169 0.2996 REMARK 3 6 3.7795 - 3.5567 1.00 2527 154 0.2403 0.2655 REMARK 3 7 3.5567 - 3.3787 1.00 2514 128 0.2659 0.2928 REMARK 3 8 3.3787 - 3.2316 1.00 2524 134 0.3197 0.3347 REMARK 3 9 3.2316 - 3.1072 0.99 2516 154 0.3537 0.3337 REMARK 3 10 3.1072 - 3.0000 0.99 2494 154 0.3648 0.4024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4338 REMARK 3 ANGLE : 1.020 5857 REMARK 3 CHIRALITY : 0.076 647 REMARK 3 PLANARITY : 0.005 742 REMARK 3 DIHEDRAL : 12.896 1621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 541:593)) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6444 50.8418 -44.0700 REMARK 3 T TENSOR REMARK 3 T11: 0.8779 T22: 1.0213 REMARK 3 T33: 0.9538 T12: -0.2116 REMARK 3 T13: 0.2132 T23: 0.4450 REMARK 3 L TENSOR REMARK 3 L11: 3.2382 L22: 7.9743 REMARK 3 L33: 2.6262 L12: -1.0934 REMARK 3 L13: -2.2214 L23: -1.2267 REMARK 3 S TENSOR REMARK 3 S11: -0.7431 S12: 0.5299 S13: -0.3923 REMARK 3 S21: -0.5474 S22: 0.8959 S23: 0.1870 REMARK 3 S31: 0.6349 S32: -0.1523 S33: -0.0185 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 465:540)) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7600 42.6818 -28.8377 REMARK 3 T TENSOR REMARK 3 T11: 0.9004 T22: 0.9426 REMARK 3 T33: 1.1957 T12: 0.1587 REMARK 3 T13: 0.2225 T23: 0.5837 REMARK 3 L TENSOR REMARK 3 L11: 6.8441 L22: 0.8924 REMARK 3 L33: 3.4011 L12: -0.7584 REMARK 3 L13: 1.6820 L23: 0.4723 REMARK 3 S TENSOR REMARK 3 S11: -0.2253 S12: 0.2782 S13: -0.0749 REMARK 3 S21: -0.0123 S22: 0.6976 S23: 1.1279 REMARK 3 S31: -0.5832 S32: -0.8240 S33: -0.3106 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 53:61)) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4382 -10.3697 -4.8531 REMARK 3 T TENSOR REMARK 3 T11: 0.9916 T22: 1.0941 REMARK 3 T33: 0.9391 T12: 0.1885 REMARK 3 T13: 0.1322 T23: 0.7665 REMARK 3 L TENSOR REMARK 3 L11: 3.4316 L22: 1.5464 REMARK 3 L33: 2.3758 L12: 0.0566 REMARK 3 L13: -2.2252 L23: 1.1631 REMARK 3 S TENSOR REMARK 3 S11: 0.1233 S12: -1.4708 S13: -1.4900 REMARK 3 S21: 0.8697 S22: -0.3446 S23: -0.6806 REMARK 3 S31: 0.2663 S32: -0.1665 S33: 1.2793 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 80:171)) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6890 -7.8734 -26.1466 REMARK 3 T TENSOR REMARK 3 T11: 0.7876 T22: 0.8983 REMARK 3 T33: 0.9459 T12: 0.1645 REMARK 3 T13: 0.1185 T23: 0.5724 REMARK 3 L TENSOR REMARK 3 L11: 8.6505 L22: 6.1655 REMARK 3 L33: 5.3173 L12: 2.6643 REMARK 3 L13: 2.7034 L23: 3.7602 REMARK 3 S TENSOR REMARK 3 S11: -0.2835 S12: 1.1663 S13: -0.0737 REMARK 3 S21: -0.2324 S22: 0.4904 S23: -0.2733 REMARK 3 S31: -0.5500 S32: -0.2149 S33: -0.0476 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 193:314)) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8587 31.7219 -10.2258 REMARK 3 T TENSOR REMARK 3 T11: 1.1622 T22: 0.7294 REMARK 3 T33: 0.7606 T12: 0.0681 REMARK 3 T13: 0.3241 T23: 0.9295 REMARK 3 L TENSOR REMARK 3 L11: 3.5949 L22: 3.3124 REMARK 3 L33: 2.4730 L12: 0.7491 REMARK 3 L13: 0.4975 L23: -0.8633 REMARK 3 S TENSOR REMARK 3 S11: 0.3894 S12: -0.0472 S13: -0.1161 REMARK 3 S21: 0.2955 S22: 0.6818 S23: 0.3920 REMARK 3 S31: -0.4212 S32: -0.2898 S33: 0.0827 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 339:436)) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8438 20.2673 -8.6378 REMARK 3 T TENSOR REMARK 3 T11: 0.8443 T22: 0.8399 REMARK 3 T33: 0.8637 T12: 0.0110 REMARK 3 T13: 0.0912 T23: 0.4156 REMARK 3 L TENSOR REMARK 3 L11: 0.6020 L22: 5.2798 REMARK 3 L33: 2.7457 L12: -1.8540 REMARK 3 L13: -0.0944 L23: -2.1170 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0060 S13: -0.2449 REMARK 3 S21: 0.6186 S22: 0.2742 S23: 0.3920 REMARK 3 S31: 0.0540 S32: -0.3262 S33: -0.3333 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 449:464)) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4729 28.0801 -14.0928 REMARK 3 T TENSOR REMARK 3 T11: 1.1616 T22: 0.9383 REMARK 3 T33: 1.5701 T12: -0.0754 REMARK 3 T13: -0.1155 T23: 0.6285 REMARK 3 L TENSOR REMARK 3 L11: 8.9938 L22: 9.7542 REMARK 3 L33: 9.5882 L12: -0.8921 REMARK 3 L13: 1.0250 L23: -1.8373 REMARK 3 S TENSOR REMARK 3 S11: -1.2782 S12: -0.6406 S13: -0.7671 REMARK 3 S21: 2.0919 S22: -0.2012 S23: -1.3434 REMARK 3 S31: 0.5153 S32: 2.6401 S33: 1.2162 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 62:79)) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3777 -13.9954 -17.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.9478 T22: 0.8446 REMARK 3 T33: 1.1737 T12: 0.2892 REMARK 3 T13: 0.0797 T23: 0.3811 REMARK 3 L TENSOR REMARK 3 L11: 5.4700 L22: 8.3556 REMARK 3 L33: 8.6650 L12: 6.7653 REMARK 3 L13: 0.2450 L23: 0.3800 REMARK 3 S TENSOR REMARK 3 S11: 0.3461 S12: -0.0807 S13: -2.9047 REMARK 3 S21: 0.9186 S22: 0.5719 S23: -1.1027 REMARK 3 S31: 0.3522 S32: -1.1992 S33: -0.9534 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 315:338)) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3352 33.6162 5.7949 REMARK 3 T TENSOR REMARK 3 T11: 1.2452 T22: 1.0683 REMARK 3 T33: 0.9022 T12: -0.0492 REMARK 3 T13: 0.3518 T23: 0.4196 REMARK 3 L TENSOR REMARK 3 L11: 8.9985 L22: 5.0285 REMARK 3 L33: 5.3851 L12: -6.1116 REMARK 3 L13: -3.7415 L23: 4.3912 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: -1.7736 S13: 0.3056 REMARK 3 S21: 1.3910 S22: 0.9904 S23: -0.1547 REMARK 3 S31: -0.1866 S32: -0.8232 S33: 0.2412 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 172:187)) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6168 7.3572 -30.0443 REMARK 3 T TENSOR REMARK 3 T11: 1.2538 T22: 1.0671 REMARK 3 T33: 1.1037 T12: 0.0739 REMARK 3 T13: 0.5427 T23: 0.2032 REMARK 3 L TENSOR REMARK 3 L11: 9.7297 L22: 0.3127 REMARK 3 L33: 2.3059 L12: 1.6979 REMARK 3 L13: 4.7372 L23: 0.8352 REMARK 3 S TENSOR REMARK 3 S11: 0.5130 S12: -1.4473 S13: 0.8738 REMARK 3 S21: 1.4470 S22: -0.1788 S23: 0.5101 REMARK 3 S31: -1.0860 S32: -1.4299 S33: -0.4920 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15253 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IJE AND 1BKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M SODIUM CITRATE TRIBASIC, 22% REMARK 280 PEG 3350, 1 MM MNCL2, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.12333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 272.24667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 204.18500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 340.30833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.06167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 136.12333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 272.24667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 340.30833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 204.18500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.06167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 38.19000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 66.14702 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -68.06167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 49 REMARK 465 MET A 50 REMARK 465 VAL A 51 REMARK 465 SER A 52 REMARK 465 ARG A 186 REMARK 465 ILE A 187 REMARK 465 LYS A 188 REMARK 465 SER A 189 REMARK 465 ASN A 190 REMARK 465 THR A 191 REMARK 465 SER A 192 REMARK 465 ASN A 437 REMARK 465 HIS A 438 REMARK 465 ARG A 439 REMARK 465 ALA A 440 REMARK 465 PRO A 441 REMARK 465 PRO A 442 REMARK 465 LEU A 443 REMARK 465 THR A 444 REMARK 465 PRO A 445 REMARK 465 SER A 446 REMARK 465 LYS A 447 REMARK 465 PRO A 448 REMARK 465 ARG A 594 REMARK 465 ALA A 595 REMARK 465 LYS A 596 REMARK 465 ASN A 597 REMARK 465 PRO A 598 REMARK 465 VAL A 599 REMARK 465 ALA A 600 REMARK 465 PRO A 601 REMARK 465 THR A 602 REMARK 465 GLU A 603 REMARK 465 ASN A 604 REMARK 465 ASN A 605 REMARK 465 THR A 606 REMARK 465 SER A 607 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 340 O PRO A 353 2.07 REMARK 500 OE1 GLN A 71 NZ LYS A 124 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 57 -60.79 -94.67 REMARK 500 GLU A 163 -120.58 42.11 REMARK 500 LYS A 194 -132.43 49.06 REMARK 500 CYS A 237 68.66 63.09 REMARK 500 PRO A 268 -165.99 -68.84 REMARK 500 ASP A 349 -123.46 63.47 REMARK 500 ILE A 354 72.06 55.21 REMARK 500 ASP A 487 -142.22 55.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 316 PRO A 317 -145.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 542 ND1 REMARK 620 2 CYS A 572 SG 98.3 REMARK 620 3 CYS A 575 SG 99.7 101.8 REMARK 620 4 CYS A 591 SG 118.9 111.5 122.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 555 SG REMARK 620 2 CYS A 558 SG 103.3 REMARK 620 3 HIS A 580 ND1 96.6 93.2 REMARK 620 4 CYS A 583 SG 111.2 125.1 122.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 704 DBREF 4L9M A 50 607 UNP O95267 GRP1_HUMAN 50 607 SEQADV 4L9M SER A 49 UNP O95267 EXPRESSION TAG SEQRES 1 A 559 SER MET VAL SER LEU GLY HIS LEU ALA LYS GLY ALA SER SEQRES 2 A 559 LEU ASP ASP LEU ILE ASP SER CYS ILE GLN SER PHE ASP SEQRES 3 A 559 ALA ASP GLY ASN LEU CYS ARG SER ASN GLN LEU LEU GLN SEQRES 4 A 559 VAL MET LEU THR MET HIS ARG ILE VAL ILE SER SER ALA SEQRES 5 A 559 GLU LEU LEU GLN LYS VAL ILE THR LEU TYR LYS ASP ALA SEQRES 6 A 559 LEU ALA LYS ASN SER PRO GLY LEU CYS LEU LYS ILE CYS SEQRES 7 A 559 TYR PHE VAL ARG TYR TRP ILE THR GLU PHE TRP VAL MET SEQRES 8 A 559 PHE LYS MET ASP ALA SER LEU THR ASP THR MET GLU GLU SEQRES 9 A 559 PHE GLN GLU LEU VAL LYS ALA LYS GLY GLU GLU LEU HIS SEQRES 10 A 559 CYS ARG LEU ILE ASP THR THR GLN ILE ASN ALA ARG ASP SEQRES 11 A 559 TRP SER ARG LYS LEU THR GLN ARG ILE LYS SER ASN THR SEQRES 12 A 559 SER LYS LYS ARG LYS VAL SER LEU LEU PHE ASP HIS LEU SEQRES 13 A 559 GLU PRO GLU GLU LEU SER GLU HIS LEU THR TYR LEU GLU SEQRES 14 A 559 PHE LYS SER PHE ARG ARG ILE SER PHE SER ASP TYR GLN SEQRES 15 A 559 ASN TYR LEU VAL ASN SER CYS VAL LYS GLU ASN PRO THR SEQRES 16 A 559 MET GLU ARG SER ILE ALA LEU CYS ASN GLY ILE SER GLN SEQRES 17 A 559 TRP VAL GLN LEU MET VAL LEU SER ARG PRO THR PRO GLN SEQRES 18 A 559 LEU ARG ALA GLU VAL PHE ILE LYS PHE ILE GLN VAL ALA SEQRES 19 A 559 GLN LYS LEU HIS GLN LEU GLN ASN PHE ASN THR LEU MET SEQRES 20 A 559 ALA VAL ILE GLY GLY LEU CYS HIS SER SER ILE SER ARG SEQRES 21 A 559 LEU LYS GLU THR SER SER HIS VAL PRO HIS GLU ILE ASN SEQRES 22 A 559 LYS VAL LEU GLY GLU MET THR GLU LEU LEU SER SER SER SEQRES 23 A 559 ARG ASN TYR ASP ASN TYR ARG ARG ALA TYR GLY GLU CYS SEQRES 24 A 559 THR ASP PHE LYS ILE PRO ILE LEU GLY VAL HIS LEU LYS SEQRES 25 A 559 ASP LEU ILE SER LEU TYR GLU ALA MET PRO ASP TYR LEU SEQRES 26 A 559 GLU ASP GLY LYS VAL ASN VAL HIS LYS LEU LEU ALA LEU SEQRES 27 A 559 TYR ASN HIS ILE SER GLU LEU VAL GLN LEU GLN GLU VAL SEQRES 28 A 559 ALA PRO PRO LEU GLU ALA ASN LYS ASP LEU VAL HIS LEU SEQRES 29 A 559 LEU THR LEU SER LEU ASP LEU TYR TYR THR GLU ASP GLU SEQRES 30 A 559 ILE TYR GLU LEU SER TYR ALA ARG GLU PRO ARG ASN HIS SEQRES 31 A 559 ARG ALA PRO PRO LEU THR PRO SER LYS PRO PRO VAL VAL SEQRES 32 A 559 VAL ASP TRP ALA SER GLY VAL SER PRO LYS PRO ASP PRO SEQRES 33 A 559 LYS THR ILE SER LYS HIS VAL GLN ARG MET VAL ASP SER SEQRES 34 A 559 VAL PHE LYS ASN TYR ASP HIS ASP GLN ASP GLY TYR ILE SEQRES 35 A 559 SER GLN GLU GLU PHE GLU LYS ILE ALA ALA SER PHE PRO SEQRES 36 A 559 PHE SER PHE CYS VAL MET ASP LYS ASP ARG GLU GLY LEU SEQRES 37 A 559 ILE SER ARG ASP GLU ILE THR ALA TYR PHE MET ARG ALA SEQRES 38 A 559 SER SER ILE TYR SER LYS LEU GLY LEU GLY PHE PRO HIS SEQRES 39 A 559 ASN PHE GLN GLU THR THR TYR LEU LYS PRO THR PHE CYS SEQRES 40 A 559 ASP ASN CYS ALA GLY PHE LEU TRP GLY VAL ILE LYS GLN SEQRES 41 A 559 GLY TYR ARG CYS LYS ASP CYS GLY MET ASN CYS HIS LYS SEQRES 42 A 559 GLN CYS LYS ASP LEU VAL VAL PHE GLU CYS LYS LYS ARG SEQRES 43 A 559 ALA LYS ASN PRO VAL ALA PRO THR GLU ASN ASN THR SER HET CIT A 701 13 HET GOL A 702 6 HET ZN A 703 1 HET ZN A 704 1 HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CIT C6 H8 O7 FORMUL 3 GOL C3 H8 O3 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *6(H2 O) HELIX 1 1 SER A 61 SER A 72 1 12 HELIX 2 2 ASN A 83 HIS A 93 1 11 HELIX 3 3 ARG A 94 VAL A 96 5 3 HELIX 4 4 SER A 98 LYS A 116 1 19 HELIX 5 5 SER A 118 PHE A 136 1 19 HELIX 6 6 TRP A 137 ASP A 143 1 7 HELIX 7 7 ASP A 143 GLY A 161 1 19 HELIX 8 8 GLU A 163 ILE A 169 1 7 HELIX 9 9 THR A 171 SER A 180 1 10 HELIX 10 10 GLU A 205 ARG A 223 1 19 HELIX 11 11 SER A 225 ASN A 235 1 11 HELIX 12 12 ASN A 241 ARG A 265 1 25 HELIX 13 13 GLN A 269 LEU A 288 1 20 HELIX 14 14 ASN A 290 CYS A 302 1 13 HELIX 15 15 HIS A 303 ARG A 308 1 6 HELIX 16 16 LEU A 309 VAL A 316 1 8 HELIX 17 17 PRO A 317 SER A 332 1 16 HELIX 18 18 TYR A 337 GLU A 346 1 10 HELIX 19 19 ILE A 354 MET A 369 1 16 HELIX 20 20 ASN A 379 LEU A 396 1 18 HELIX 21 21 GLN A 397 VAL A 399 5 3 HELIX 22 22 ASN A 406 LEU A 417 1 12 HELIX 23 23 THR A 422 GLU A 434 1 13 HELIX 24 24 ASP A 463 ASP A 483 1 21 HELIX 25 25 GLN A 492 SER A 501 1 10 HELIX 26 26 SER A 518 SER A 534 1 17 SHEET 1 A 2 ILE A 490 SER A 491 0 SHEET 2 A 2 LEU A 516 ILE A 517 -1 O ILE A 517 N ILE A 490 SHEET 1 B 3 PHE A 544 THR A 547 0 SHEET 2 B 3 GLY A 569 CYS A 572 -1 O ARG A 571 N GLN A 545 SHEET 3 B 3 ASN A 578 CYS A 579 -1 O CYS A 579 N TYR A 570 LINK ND1 HIS A 542 ZN ZN A 703 1555 1555 2.11 LINK SG CYS A 555 ZN ZN A 704 1555 1555 2.35 LINK SG CYS A 558 ZN ZN A 704 1555 1555 2.29 LINK SG CYS A 572 ZN ZN A 703 1555 1555 2.14 LINK SG CYS A 575 ZN ZN A 703 1555 1555 2.15 LINK ND1 HIS A 580 ZN ZN A 704 1555 1555 2.07 LINK SG CYS A 583 ZN ZN A 704 1555 1555 2.18 LINK SG CYS A 591 ZN ZN A 703 1555 1555 2.22 CISPEP 1 ARG A 335 ASN A 336 0 -23.35 CISPEP 2 ASP A 453 TRP A 454 0 -1.48 SITE 1 AC1 4 LYS A 219 ARG A 223 ARG A 473 HOH A 805 SITE 1 AC2 5 PHE A 504 TYR A 549 LEU A 550 VAL A 565 SITE 2 AC2 5 GLN A 568 SITE 1 AC3 4 HIS A 542 CYS A 572 CYS A 575 CYS A 591 SITE 1 AC4 4 CYS A 555 CYS A 558 HIS A 580 CYS A 583 CRYST1 76.380 76.380 408.370 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013092 0.007559 0.000000 0.00000 SCALE2 0.000000 0.015118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002449 0.00000