HEADER LIGASE 01-MAR-13 4JGH TITLE STRUCTURE OF THE SOCS2-ELONGIN BC COMPLEX BOUND TO AN N-TERMINAL TITLE 2 FRAGMENT OF CULLIN5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR OF CYTOKINE SIGNALING 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-198; COMPND 5 SYNONYM: SOCS-2, CYTOKINE-INDUCIBLE SH2 PROTEIN 2, CIS-2, STAT- COMPND 6 INDUCED STAT INHIBITOR 2, SSI-2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: ELONGIN 18 KDA SUBUNIT, ELONGIN-B, ELOB, RNA POLYMERASE II COMPND 12 TRANSCRIPTION FACTOR SIII SUBUNIT B, SIII P18; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: UNP RESIDUES 17-112; COMPND 18 SYNONYM: ELONGIN 15 KDA SUBUNIT, ELONGIN-C, ELOC, RNA POLYMERASE II COMPND 19 TRANSCRIPTION FACTOR SIII SUBUNIT C, SIII P15, STROMAL MEMBRANE- COMPND 20 ASSOCIATED PROTEIN SMAP1B HOMOLOG; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: CULLIN-5; COMPND 24 CHAIN: D; COMPND 25 FRAGMENT: UNP RESIDUES 10-386; COMPND 26 SYNONYM: CUL-5, VASOPRESSIN-ACTIVATED CALCIUM-MOBILIZING RECEPTOR 1, COMPND 27 VACM-1; COMPND 28 ENGINEERED: YES; COMPND 29 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CIS2, HOMO SAPIENS, SOCS2, SSI2, STATI2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX HTA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: MUS MUSCULUS, TCEB2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRSFDUET; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: MOUSE; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 GENE: MUS MUSCULUS, TCEB1; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PRSFDUET; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: HUMAN; SOURCE 34 ORGANISM_TAXID: 9606; SOURCE 35 GENE: CUL5, HOMO SAPIENS, VACM1; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PET22B-CPD10H KEYWDS CULLIN-RING E3 UBIQUITIN LIGASES, UBIQUITINATION, CYTOSOL, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.K.KIM,M.J.KWAK,B.KU,H.Y.SUH,K.JOO,J.LEE,J.U.JUNG,B.H.OH REVDAT 2 20-SEP-23 4JGH 1 SEQADV REVDAT 1 07-AUG-13 4JGH 0 JRNL AUTH Y.K.KIM,M.J.KWAK,B.KU,H.Y.SUH,K.JOO,J.LEE,J.U.JUNG,B.H.OH JRNL TITL STRUCTURAL BASIS OF INTERSUBUNIT RECOGNITION IN ELONGIN JRNL TITL 2 BC-CULLIN 5-SOCS BOX UBIQUITIN-PROTEIN LIGASE COMPLEXES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1587 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23897481 JRNL DOI 10.1107/S0907444913011220 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 5% RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3405 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : K-B MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34527 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 165.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2C9W (FOR SOCS2-ELONGIN BC) AND 2WZK (FOR CUL5) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M SODIUM CITRATE AND 18 % (W/V) REMARK 280 PEG 3350, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.00050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.00050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 69.42450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.72800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 69.42450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.72800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.00050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 69.42450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.72800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.00050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 69.42450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.72800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 69.42450 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 -70.72800 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 -91.00050 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 136 REMARK 465 ARG A 137 REMARK 465 THR A 138 REMARK 465 GLY A 139 REMARK 465 PRO A 140 REMARK 465 GLU A 141 REMARK 465 ALA A 142 REMARK 465 PRO A 143 REMARK 465 ARG A 144 REMARK 465 ASN A 145 REMARK 465 PRO B 105 REMARK 465 GLN B 106 REMARK 465 ASP B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 GLY B 110 REMARK 465 SER B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 GLU B 114 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 GLN B 118 REMARK 465 MET D 119 REMARK 465 GLY D 120 REMARK 465 LYS D 121 REMARK 465 GLN D 122 REMARK 465 GLY D 123 REMARK 465 SER D 124 REMARK 465 ASN D 125 REMARK 465 LYS D 126 REMARK 465 LYS D 127 REMARK 465 SER D 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 133 SG REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLN D 228 CG CD OE1 NE2 REMARK 470 LYS D 232 CG CD CE NZ REMARK 470 GLU D 331 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 27 109.93 -51.49 REMARK 500 SER A 76 35.63 -80.62 REMARK 500 THR A 147 -128.06 49.30 REMARK 500 THR A 153 -62.69 -120.33 REMARK 500 PRO A 182 37.00 -83.22 REMARK 500 TYR A 194 113.60 -162.52 REMARK 500 ARG B 9 -146.00 -148.58 REMARK 500 HIS B 10 97.41 -67.45 REMARK 500 ALA B 67 71.91 -119.72 REMARK 500 ALA B 81 -139.26 -79.43 REMARK 500 ASP B 83 -53.63 -140.66 REMARK 500 LEU B 88 101.03 -57.53 REMARK 500 MET B 103 35.97 -91.79 REMARK 500 ALA C 53 177.68 -54.18 REMARK 500 PRO C 91 150.77 -38.42 REMARK 500 GLU C 92 137.97 -174.58 REMARK 500 ASP C 111 83.24 65.34 REMARK 500 TRP D 19 -31.11 -35.20 REMARK 500 SER D 34 123.22 -34.53 REMARK 500 SER D 149 -29.71 -30.57 REMARK 500 ASN D 150 -63.11 -94.77 REMARK 500 LEU D 187 51.70 -107.55 REMARK 500 ASP D 193 111.51 171.43 REMARK 500 ASN D 201 -80.71 -119.04 REMARK 500 ARG D 215 -19.44 -48.12 REMARK 500 ALA D 234 -9.09 -56.37 REMARK 500 THR D 251 -33.84 -134.44 REMARK 500 CYS D 255 -20.33 -144.33 REMARK 500 VAL D 270 -57.13 -135.07 REMARK 500 LEU D 314 -62.02 -96.31 REMARK 500 LYS D 384 120.14 -172.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS DISCREPANCY ARISES FROM THE TRANSCRIPTION ELONGATION FACTOR B REMARK 999 POLYPEPTIDE 2 (MUS MUSCULUS) OF NP_080581 DBREF 4JGH A 32 198 UNP O14508 SOCS2_HUMAN 32 198 DBREF 4JGH B 1 118 UNP P62869 ELOB_MOUSE 1 118 DBREF 4JGH C 17 112 UNP P83940 ELOC_MOUSE 17 112 DBREF 4JGH D 10 386 UNP Q93034 CUL5_HUMAN 10 386 SEQADV 4JGH HIS A 26 UNP O14508 EXPRESSION TAG SEQADV 4JGH MET A 27 UNP O14508 EXPRESSION TAG SEQADV 4JGH ASP A 28 UNP O14508 EXPRESSION TAG SEQADV 4JGH PRO A 29 UNP O14508 EXPRESSION TAG SEQADV 4JGH GLU A 30 UNP O14508 EXPRESSION TAG SEQADV 4JGH PHE A 31 UNP O14508 EXPRESSION TAG SEQADV 4JGH PRO C 100 UNP P83940 ALA 100 SEE REMARK 999 SEQADV 4JGH ARG D 341 UNP Q93034 VAL 341 ENGINEERED MUTATION SEQADV 4JGH ASP D 345 UNP Q93034 LEU 345 ENGINEERED MUTATION SEQADV 4JGH VAL D 387 UNP Q93034 EXPRESSION TAG SEQRES 1 A 173 HIS MET ASP PRO GLU PHE GLN ALA ALA ARG LEU ALA LYS SEQRES 2 A 173 ALA LEU ARG GLU LEU GLY GLN THR GLY TRP TYR TRP GLY SEQRES 3 A 173 SER MET THR VAL ASN GLU ALA LYS GLU LYS LEU LYS GLU SEQRES 4 A 173 ALA PRO GLU GLY THR PHE LEU ILE ARG ASP SER SER HIS SEQRES 5 A 173 SER ASP TYR LEU LEU THR ILE SER VAL LYS THR SER ALA SEQRES 6 A 173 GLY PRO THR ASN LEU ARG ILE GLU TYR GLN ASP GLY LYS SEQRES 7 A 173 PHE ARG LEU ASP SER ILE ILE CYS VAL LYS SER LYS LEU SEQRES 8 A 173 LYS GLN PHE ASP SER VAL VAL HIS LEU ILE ASP TYR TYR SEQRES 9 A 173 VAL GLN MET CYS LYS ASP LYS ARG THR GLY PRO GLU ALA SEQRES 10 A 173 PRO ARG ASN GLY THR VAL HIS LEU TYR LEU THR LYS PRO SEQRES 11 A 173 LEU TYR THR SER ALA PRO SER LEU GLN HIS LEU CYS ARG SEQRES 12 A 173 LEU THR ILE ASN LYS CYS THR GLY ALA ILE TRP GLY LEU SEQRES 13 A 173 PRO LEU PRO THR ARG LEU LYS ASP TYR LEU GLU GLU TYR SEQRES 14 A 173 LYS PHE GLN VAL SEQRES 1 B 118 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 B 118 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 B 118 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 118 GLU GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 118 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 B 118 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 118 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU ARG ILE GLU SEQRES 8 B 118 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 9 B 118 PRO GLN ASP SER GLY GLY SER ALA ASN GLU GLN ALA VAL SEQRES 10 B 118 GLN SEQRES 1 C 96 MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU PHE SEQRES 2 C 96 ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR ILE SEQRES 3 C 96 LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU ASN SEQRES 4 C 96 GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER HIS SEQRES 5 C 96 VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS VAL SEQRES 6 C 96 ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE PRO SEQRES 7 C 96 ILE ALA PRO GLU ILE PRO LEU GLU LEU LEU MET ALA ALA SEQRES 8 C 96 ASN PHE LEU ASP CYS SEQRES 1 D 378 LYS GLY SER LEU GLN PHE GLU ASP LYS TRP ASP PHE MET SEQRES 2 D 378 ARG PRO ILE VAL LEU LYS LEU LEU ARG GLN GLU SER VAL SEQRES 3 D 378 THR LYS GLN GLN TRP PHE ASP LEU PHE SER ASP VAL HIS SEQRES 4 D 378 ALA VAL CYS LEU TRP ASP ASP LYS GLY PRO ALA LYS ILE SEQRES 5 D 378 HIS GLN ALA LEU LYS GLU ASP ILE LEU GLU PHE ILE LYS SEQRES 6 D 378 GLN ALA GLN ALA ARG VAL LEU SER HIS GLN ASP ASP THR SEQRES 7 D 378 ALA LEU LEU LYS ALA TYR ILE VAL GLU TRP ARG LYS PHE SEQRES 8 D 378 PHE THR GLN CYS ASP ILE LEU PRO LYS PRO PHE CYS GLN SEQRES 9 D 378 LEU GLU ILE THR LEU MET GLY LYS GLN GLY SER ASN LYS SEQRES 10 D 378 LYS SER ASN VAL GLU ASP SER ILE VAL ARG LYS LEU MET SEQRES 11 D 378 LEU ASP THR TRP ASN GLU SER ILE PHE SER ASN ILE LYS SEQRES 12 D 378 ASN ARG LEU GLN ASP SER ALA MET LYS LEU VAL HIS ALA SEQRES 13 D 378 GLU ARG LEU GLY GLU ALA PHE ASP SER GLN LEU VAL ILE SEQRES 14 D 378 GLY VAL ARG GLU SER TYR VAL ASN LEU CYS SER ASN PRO SEQRES 15 D 378 GLU ASP LYS LEU GLN ILE TYR ARG ASP ASN PHE GLU LYS SEQRES 16 D 378 ALA TYR LEU ASP SER THR GLU ARG PHE TYR ARG THR GLN SEQRES 17 D 378 ALA PRO SER TYR LEU GLN GLN ASN GLY VAL GLN ASN TYR SEQRES 18 D 378 MET LYS TYR ALA ASP ALA LYS LEU LYS GLU GLU GLU LYS SEQRES 19 D 378 ARG ALA LEU ARG TYR LEU GLU THR ARG ARG GLU CYS ASN SEQRES 20 D 378 SER VAL GLU ALA LEU MET GLU CYS CYS VAL ASN ALA LEU SEQRES 21 D 378 VAL THR SER PHE LYS GLU THR ILE LEU ALA GLU CYS GLN SEQRES 22 D 378 GLY MET ILE LYS ARG ASN GLU THR GLU LYS LEU HIS LEU SEQRES 23 D 378 MET PHE SER LEU MET ASP LYS VAL PRO ASN GLY ILE GLU SEQRES 24 D 378 PRO MET LEU LYS ASP LEU GLU GLU HIS ILE ILE SER ALA SEQRES 25 D 378 GLY LEU ALA ASP MET VAL ALA ALA ALA GLU THR ILE THR SEQRES 26 D 378 THR ASP SER GLU LYS TYR ARG GLU GLN LEU ASP THR LEU SEQRES 27 D 378 PHE ASN ARG PHE SER LYS LEU VAL LYS GLU ALA PHE GLN SEQRES 28 D 378 ASP ASP PRO ARG PHE LEU THR ALA ARG ASP LYS ALA TYR SEQRES 29 D 378 LYS ALA VAL VAL ASN ASP ALA THR ILE PHE LYS LEU GLU SEQRES 30 D 378 VAL HELIX 1 1 ASP A 28 LEU A 40 1 13 HELIX 2 2 ARG A 41 THR A 46 5 6 HELIX 3 3 THR A 54 GLU A 64 1 11 HELIX 4 4 SER A 121 ASP A 135 1 15 HELIX 5 5 SER A 162 THR A 175 1 14 HELIX 6 6 ALA A 177 LEU A 181 5 5 HELIX 7 7 ARG A 186 LEU A 191 1 6 HELIX 8 8 THR B 23 LYS B 36 1 14 HELIX 9 9 PRO B 38 GLU B 40 5 3 HELIX 10 10 PRO B 100 LYS B 104 5 5 HELIX 11 11 ARG C 33 LEU C 37 1 5 HELIX 12 12 SER C 39 LEU C 46 1 8 HELIX 13 13 SER C 47 GLN C 51 5 5 HELIX 14 14 PRO C 66 ARG C 82 1 17 HELIX 15 15 ILE C 99 ASP C 111 1 13 HELIX 16 16 GLN D 14 ARG D 31 1 18 HELIX 17 17 THR D 36 ASP D 54 1 19 HELIX 18 18 LYS D 56 SER D 82 1 27 HELIX 19 19 ASP D 85 CYS D 104 1 20 HELIX 20 20 PRO D 108 PRO D 110 5 3 HELIX 21 21 PHE D 111 ILE D 116 1 6 HELIX 22 22 SER D 133 ILE D 147 1 15 HELIX 23 23 ILE D 147 LEU D 168 1 22 HELIX 24 24 SER D 174 LEU D 187 1 14 HELIX 25 25 LEU D 195 ASP D 200 1 6 HELIX 26 26 ASN D 201 ASN D 225 1 25 HELIX 27 27 GLY D 226 LEU D 249 1 24 HELIX 28 28 ASN D 256 VAL D 270 1 15 HELIX 29 29 PHE D 273 LEU D 278 1 6 HELIX 30 30 GLU D 280 ARG D 287 1 8 HELIX 31 31 GLU D 289 ASP D 301 1 13 HELIX 32 32 PRO D 309 THR D 334 1 26 HELIX 33 33 ASP D 336 ALA D 358 1 23 HELIX 34 34 ASP D 362 ASN D 378 1 17 SHEET 1 A 5 LYS A 103 LEU A 106 0 SHEET 2 A 5 GLY A 91 GLN A 100 -1 N GLU A 98 O ARG A 105 SHEET 3 A 5 LEU A 82 THR A 88 -1 N VAL A 86 O THR A 93 SHEET 4 A 5 THR A 69 ASP A 74 -1 N ARG A 73 O THR A 83 SHEET 5 A 5 LYS A 154 PRO A 155 1 O LYS A 154 N PHE A 70 SHEET 1 B 7 GLN B 42 TYR B 45 0 SHEET 2 B 7 ALA B 73 PHE B 79 -1 O GLY B 76 N TYR B 45 SHEET 3 B 7 ASP B 2 ARG B 8 1 N ARG B 8 O VAL B 75 SHEET 4 B 7 THR B 12 LYS B 19 -1 O ILE B 14 N ILE B 7 SHEET 5 B 7 GLU C 28 LYS C 32 1 O ILE C 30 N THR B 13 SHEET 6 B 7 TYR C 18 ILE C 22 -1 N LEU C 21 O PHE C 29 SHEET 7 B 7 ASN C 58 ASN C 61 1 O VAL C 60 N LYS C 20 CRYST1 138.849 141.456 182.001 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005494 0.00000