HEADER TRANSCRIPTION/DNA 29-AUG-12 4GUQ TITLE STRUCTURE OF MUTS139F P73 DNA BINDING DOMAIN COMPLEXED WITH 20BP DNA TITLE 2 RESPONSE ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*GP*AP*AP*CP*AP*TP*GP*TP*TP*C)-3'); COMPND 3 CHAIN: E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TUMOR PROTEIN P73; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: UNP RESIDUES 115-312; COMPND 9 SYNONYM: P53-LIKE TRANSCRIPTION FACTOR, P53-RELATED PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: HUMAN P73, P73, TP73; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TUMOR SUPPRESSOR, BETA-IMMUNOGLOBULIN, TRANSCRIPTION FACTOR, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.S.ETHAYATHULLA,H.T.NGUYEN,H.VIADIU REVDAT 3 13-SEP-23 4GUQ 1 REMARK SEQADV LINK REVDAT 2 23-OCT-13 4GUQ 1 JRNL REVDAT 1 14-AUG-13 4GUQ 0 JRNL AUTH Y.CIRIBILLI,P.MONTI,A.BISIO,H.T.NGUYEN,A.S.ETHAYATHULLA, JRNL AUTH 2 A.RAMOS,G.FOGGETTI,P.MENICHINI,D.MENENDEZ,M.A.RESNICK, JRNL AUTH 3 H.VIADIU,G.FRONZA,A.INGA JRNL TITL TRANSACTIVATION SPECIFICITY IS CONSERVED AMONG P53 FAMILY JRNL TITL 2 PROTEINS AND DEPENDS ON A RESPONSE ELEMENT SEQUENCE CODE. JRNL REF NUCLEIC ACIDS RES. V. 41 8637 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23892287 JRNL DOI 10.1093/NAR/GKT657 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 6169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.303 REMARK 3 R VALUE (WORKING SET) : 0.302 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 306 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3121 REMARK 3 NUCLEIC ACID ATOMS : 410 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.39000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.904 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.750 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 108.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.790 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3672 ; 0.019 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5077 ; 2.070 ; 1.883 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.072 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;40.246 ;23.219 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;26.930 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;25.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2706 ; 0.014 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 400 E 409 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8419 -25.2302 -1.8420 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.3316 REMARK 3 T33: 0.1177 T12: -0.0006 REMARK 3 T13: 0.0473 T23: 0.1077 REMARK 3 L TENSOR REMARK 3 L11: 1.4520 L22: 4.0476 REMARK 3 L33: 8.6795 L12: -1.4144 REMARK 3 L13: -2.3653 L23: -1.2704 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: 0.0895 S13: -0.3089 REMARK 3 S21: 0.2272 S22: -0.4529 S23: 0.1906 REMARK 3 S31: -0.0061 S32: 0.3217 S33: 0.6161 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 410 F 419 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9243 -25.3652 -2.9897 REMARK 3 T TENSOR REMARK 3 T11: 0.5175 T22: 0.5276 REMARK 3 T33: 0.3754 T12: 0.0825 REMARK 3 T13: -0.0644 T23: -0.1877 REMARK 3 L TENSOR REMARK 3 L11: 1.5535 L22: 0.8474 REMARK 3 L33: 0.1282 L12: 1.1084 REMARK 3 L13: -0.2852 L23: -0.1736 REMARK 3 S TENSOR REMARK 3 S11: -0.2106 S12: -0.1517 S13: -0.0988 REMARK 3 S21: -0.1092 S22: -0.0566 S23: 0.0076 REMARK 3 S31: 0.0125 S32: -0.1338 S33: 0.2672 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 60.3488 -48.0810 2.8550 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.0765 REMARK 3 T33: 0.0233 T12: -0.0361 REMARK 3 T13: 0.0091 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.5637 L22: 4.1615 REMARK 3 L33: 0.6860 L12: -2.0481 REMARK 3 L13: -0.4300 L23: -0.2365 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0550 S13: -0.0743 REMARK 3 S21: 0.0187 S22: -0.0811 S23: 0.0548 REMARK 3 S31: -0.1044 S32: -0.0107 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 311 REMARK 3 ORIGIN FOR THE GROUP (A): 65.3245 -7.1559 -7.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.0651 REMARK 3 T33: 0.0178 T12: 0.0492 REMARK 3 T13: 0.0078 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 7.3189 L22: 0.6694 REMARK 3 L33: 1.2463 L12: 1.4097 REMARK 3 L13: 2.1208 L23: 0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.1095 S12: -0.2365 S13: 0.2727 REMARK 3 S21: -0.0672 S22: -0.0116 S23: 0.0326 REMARK 3 S31: -0.1001 S32: -0.2135 S33: 0.1211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL SI(111) REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6475 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 5.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4G82 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 50-125 MM SODIUM ACETATE REMARK 280 AND 20-24% (W/V) PEG 3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.36433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.72867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.04650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.41083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 5.68217 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 103 REMARK 465 GLY A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 MET B 103 REMARK 465 GLY B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 SER B 166 REMARK 465 GLN B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 PHE A 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 126 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 PHE B 114 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DG E 400 O3' DC E 409 1556 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 134 173.00 -59.99 REMARK 500 TRP A 142 44.34 -142.27 REMARK 500 LYS A 149 52.60 39.72 REMARK 500 CYS A 297 70.13 -119.21 REMARK 500 TYR B 121 67.31 -152.17 REMARK 500 THR B 136 -3.96 85.62 REMARK 500 ALA B 156 -1.44 73.54 REMARK 500 PRO B 171 173.80 -55.93 REMARK 500 THR B 173 150.01 -48.41 REMARK 500 MET B 257 38.33 -93.39 REMARK 500 ARG B 287 133.35 -175.22 REMARK 500 CYS B 295 -166.57 -121.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 194 SG REMARK 620 2 HIS A 197 ND1 83.5 REMARK 620 3 CYS A 258 SG 106.1 138.3 REMARK 620 4 CYS A 262 SG 114.9 95.7 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 194 SG REMARK 620 2 HIS B 197 ND1 113.6 REMARK 620 3 CYS B 258 SG 90.9 151.7 REMARK 620 4 CYS B 262 SG 88.6 108.5 85.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G82 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND TO A REMARK 900 FULL RESPONSE-ELEMENT REMARK 900 RELATED ID: 4G83 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND TO A REMARK 900 FULL RESPONSE-ELEMENT DBREF 4GUQ A 115 312 UNP O15350 P73_HUMAN 115 312 DBREF 4GUQ B 115 312 UNP O15350 P73_HUMAN 115 312 DBREF 4GUQ E 400 409 PDB 4GUQ 4GUQ 400 409 DBREF 4GUQ F 410 419 PDB 4GUQ 4GUQ 410 419 SEQADV 4GUQ MET A 103 UNP O15350 INITIATING METHIONINE SEQADV 4GUQ GLY A 104 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 105 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 106 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 107 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 108 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 109 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 110 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 111 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS A 112 UNP O15350 EXPRESSION TAG SEQADV 4GUQ GLU A 113 UNP O15350 EXPRESSION TAG SEQADV 4GUQ PHE A 114 UNP O15350 EXPRESSION TAG SEQADV 4GUQ PHE A 139 UNP O15350 SER 139 ENGINEERED MUTATION SEQADV 4GUQ MET B 103 UNP O15350 INITIATING METHIONINE SEQADV 4GUQ GLY B 104 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 105 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 106 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 107 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 108 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 109 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 110 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 111 UNP O15350 EXPRESSION TAG SEQADV 4GUQ HIS B 112 UNP O15350 EXPRESSION TAG SEQADV 4GUQ GLU B 113 UNP O15350 EXPRESSION TAG SEQADV 4GUQ PHE B 114 UNP O15350 EXPRESSION TAG SEQADV 4GUQ PHE B 139 UNP O15350 SER 139 ENGINEERED MUTATION SEQRES 1 E 10 DG DA DA DC DA DT DG DT DT DC SEQRES 1 F 10 DG DA DA DC DA DT DG DT DT DC SEQRES 1 A 210 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS GLU PHE ILE SEQRES 2 A 210 PRO SER ASN THR ASP TYR PRO GLY PRO HIS HIS PHE GLU SEQRES 3 A 210 VAL THR PHE GLN GLN SER SER THR ALA LYS PHE ALA THR SEQRES 4 A 210 TRP THR TYR SER PRO LEU LEU LYS LYS LEU TYR CYS GLN SEQRES 5 A 210 ILE ALA LYS THR CYS PRO ILE GLN ILE LYS VAL SER THR SEQRES 6 A 210 PRO PRO PRO PRO GLY THR ALA ILE ARG ALA MET PRO VAL SEQRES 7 A 210 TYR LYS LYS ALA GLU HIS VAL THR ASP VAL VAL LYS ARG SEQRES 8 A 210 CYS PRO ASN HIS GLU LEU GLY ARG ASP PHE ASN GLU GLY SEQRES 9 A 210 GLN SER ALA PRO ALA SER HIS LEU ILE ARG VAL GLU GLY SEQRES 10 A 210 ASN ASN LEU SER GLN TYR VAL ASP ASP PRO VAL THR GLY SEQRES 11 A 210 ARG GLN SER VAL VAL VAL PRO TYR GLU PRO PRO GLN VAL SEQRES 12 A 210 GLY THR GLU PHE THR THR ILE LEU TYR ASN PHE MET CYS SEQRES 13 A 210 ASN SER SER CYS VAL GLY GLY MET ASN ARG ARG PRO ILE SEQRES 14 A 210 LEU ILE ILE ILE THR LEU GLU MET ARG ASP GLY GLN VAL SEQRES 15 A 210 LEU GLY ARG ARG SER PHE GLU GLY ARG ILE CYS ALA CYS SEQRES 16 A 210 PRO GLY ARG ASP ARG LYS ALA ASP GLU ASP HIS TYR ARG SEQRES 17 A 210 GLU GLN SEQRES 1 B 210 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS GLU PHE ILE SEQRES 2 B 210 PRO SER ASN THR ASP TYR PRO GLY PRO HIS HIS PHE GLU SEQRES 3 B 210 VAL THR PHE GLN GLN SER SER THR ALA LYS PHE ALA THR SEQRES 4 B 210 TRP THR TYR SER PRO LEU LEU LYS LYS LEU TYR CYS GLN SEQRES 5 B 210 ILE ALA LYS THR CYS PRO ILE GLN ILE LYS VAL SER THR SEQRES 6 B 210 PRO PRO PRO PRO GLY THR ALA ILE ARG ALA MET PRO VAL SEQRES 7 B 210 TYR LYS LYS ALA GLU HIS VAL THR ASP VAL VAL LYS ARG SEQRES 8 B 210 CYS PRO ASN HIS GLU LEU GLY ARG ASP PHE ASN GLU GLY SEQRES 9 B 210 GLN SER ALA PRO ALA SER HIS LEU ILE ARG VAL GLU GLY SEQRES 10 B 210 ASN ASN LEU SER GLN TYR VAL ASP ASP PRO VAL THR GLY SEQRES 11 B 210 ARG GLN SER VAL VAL VAL PRO TYR GLU PRO PRO GLN VAL SEQRES 12 B 210 GLY THR GLU PHE THR THR ILE LEU TYR ASN PHE MET CYS SEQRES 13 B 210 ASN SER SER CYS VAL GLY GLY MET ASN ARG ARG PRO ILE SEQRES 14 B 210 LEU ILE ILE ILE THR LEU GLU MET ARG ASP GLY GLN VAL SEQRES 15 B 210 LEU GLY ARG ARG SER PHE GLU GLY ARG ILE CYS ALA CYS SEQRES 16 B 210 PRO GLY ARG ASP ARG LYS ALA ASP GLU ASP HIS TYR ARG SEQRES 17 B 210 GLU GLN HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) HELIX 1 1 LYS A 183 THR A 188 1 6 HELIX 2 2 CYS A 194 LEU A 199 1 6 HELIX 3 3 GLY A 200 GLU A 205 1 6 HELIX 4 4 CYS A 297 GLU A 311 1 15 HELIX 5 5 LYS B 183 THR B 188 1 6 HELIX 6 6 CYS B 194 LEU B 199 1 6 HELIX 7 7 GLY B 200 GLU B 205 1 6 HELIX 8 8 CYS B 297 GLU B 311 1 15 SHEET 1 A 4 PHE A 127 THR A 130 0 SHEET 2 A 4 CYS A 159 VAL A 165 -1 O GLN A 162 N THR A 130 SHEET 3 A 4 THR A 250 PHE A 256 -1 O ILE A 252 N ILE A 161 SHEET 4 A 4 ILE A 215 VAL A 217 -1 N ARG A 216 O ASN A 255 SHEET 1 B 7 TYR A 144 SER A 145 0 SHEET 2 B 7 LYS A 150 GLN A 154 -1 O LYS A 150 N SER A 145 SHEET 3 B 7 VAL A 284 CYS A 295 1 O GLU A 291 N LEU A 151 SHEET 4 B 7 ILE A 271 GLU A 278 -1 N LEU A 277 O LEU A 285 SHEET 5 B 7 ALA A 174 TYR A 181 -1 N ALA A 174 O GLU A 278 SHEET 6 B 7 GLN A 234 PRO A 239 -1 O VAL A 238 N ILE A 175 SHEET 7 B 7 GLN A 224 ASP A 227 -1 N GLN A 224 O VAL A 237 SHEET 1 C 4 GLU B 128 THR B 130 0 SHEET 2 C 4 CYS B 159 LYS B 164 -1 O GLN B 162 N THR B 130 SHEET 3 C 4 THR B 250 PHE B 256 -1 O ILE B 252 N ILE B 161 SHEET 4 C 4 ILE B 215 ARG B 216 -1 N ARG B 216 O ASN B 255 SHEET 1 D 5 TRP B 142 SER B 145 0 SHEET 2 D 5 LYS B 150 GLN B 154 -1 O TYR B 152 N THR B 143 SHEET 3 D 5 VAL B 284 CYS B 295 1 O GLU B 291 N LEU B 151 SHEET 4 D 5 ILE B 271 GLU B 278 -1 N ILE B 273 O PHE B 290 SHEET 5 D 5 PRO B 179 TYR B 181 -1 N VAL B 180 O LEU B 272 SHEET 1 E 7 TRP B 142 SER B 145 0 SHEET 2 E 7 LYS B 150 GLN B 154 -1 O TYR B 152 N THR B 143 SHEET 3 E 7 VAL B 284 CYS B 295 1 O GLU B 291 N LEU B 151 SHEET 4 E 7 ILE B 271 GLU B 278 -1 N ILE B 273 O PHE B 290 SHEET 5 E 7 ALA B 174 ALA B 177 -1 N ARG B 176 O THR B 276 SHEET 6 E 7 GLN B 234 PRO B 239 -1 O VAL B 238 N ILE B 175 SHEET 7 E 7 GLN B 224 ASP B 227 -1 N GLN B 224 O VAL B 237 LINK P DG E 400 O3' DC E 409 1555 1556 1.58 LINK P DG F 410 O3' DC F 419 1555 1554 1.62 LINK SG CYS A 194 ZN ZN A 401 1555 1555 2.27 LINK ND1 HIS A 197 ZN ZN A 401 1555 1555 2.03 LINK SG CYS A 258 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 262 ZN ZN A 401 1555 1555 2.28 LINK SG CYS B 194 ZN ZN B 401 1555 1555 2.33 LINK ND1 HIS B 197 ZN ZN B 401 1555 1555 2.02 LINK SG CYS B 258 ZN ZN B 401 1555 1555 2.29 LINK SG CYS B 262 ZN ZN B 401 1555 1555 2.35 SITE 1 AC1 4 CYS A 194 HIS A 197 CYS A 258 CYS A 262 SITE 1 AC2 4 CYS B 194 HIS B 197 CYS B 258 CYS B 262 CRYST1 172.498 172.498 34.093 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005797 0.003347 0.000000 0.00000 SCALE2 0.000000 0.006694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029332 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.961291 -0.273663 0.032056 -5.75659 1 MTRIX2 2 -0.272947 -0.961704 -0.025010 -36.42430 1 MTRIX3 2 0.037673 0.015293 -0.999173 -6.26985 1