HEADER CELL CYCLE 06-AUG-12 4GGC TITLE STRUCTURAL ANALYSIS OF HUMAN CDC20 SUPPORTS MULTI-SITE DEGRON TITLE 2 RECOGNITION BY APC/C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CYCLE PROTEIN 20 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P55CDC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC20; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS CELL CYCLE, MITOSIS, SECURIN, UBIQUITINATION, WD40 EXPDTA X-RAY DIFFRACTION AUTHOR X.LUO,W.TIAN,D.R.TOMCHICK REVDAT 4 28-FEB-24 4GGC 1 REMARK SEQADV REVDAT 3 15-NOV-17 4GGC 1 REMARK REVDAT 2 26-DEC-12 4GGC 1 JRNL REVDAT 1 07-NOV-12 4GGC 0 JRNL AUTH W.TIAN,B.LI,R.WARRINGTON,D.R.TOMCHICK,H.YU,X.LUO JRNL TITL STRUCTURAL ANALYSIS OF HUMAN CDC20 SUPPORTS MULTISITE DEGRON JRNL TITL 2 RECOGNITION BY APC/C. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 18419 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23091007 JRNL DOI 10.1073/PNAS.1213438109 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YU REMARK 1 TITL CDC20: A WD40 ACTIVATOR FOR A CELL CYCLE DEGRADATION MACHINE REMARK 1 REF MOL.CELL V. 27 3 2007 REMARK 1 REFN ISSN 1097-2765 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.QI,H.YU REMARK 1 TITL KEN-BOX-DEPENDENT DEGRADATION OF BUB1 SPINDLE CHECKPOINT REMARK 1 TITL 2 KINASE BY THE ANAPHASE-PROMOTING COMPLEX/CYCLOSOME REMARK 1 REF J.BIOL.CHEM. V. 282 3672 2007 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH Z.TANG,R.BHARADWAJ,B.LI,H.YU REMARK 1 TITL MAD2-INDEPENDENT INHIBITION OF APC-CDC20 BY THE MITOTIC REMARK 1 TITL 2 CHECKPOINT PROTEIN BUBR1 REMARK 1 REF DEV.CELL V. 1 227 2001 REMARK 1 REFN ISSN 1534-5807 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 65641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1226 - 3.8908 1.00 2769 146 0.1386 0.1413 REMARK 3 2 3.8908 - 3.0895 1.00 2744 141 0.1291 0.1153 REMARK 3 3 3.0895 - 2.6993 1.00 2730 141 0.1371 0.1486 REMARK 3 4 2.6993 - 2.4527 1.00 2736 152 0.1326 0.1457 REMARK 3 5 2.4527 - 2.2769 1.00 2719 137 0.1274 0.1532 REMARK 3 6 2.2769 - 2.1428 1.00 2741 142 0.1249 0.1452 REMARK 3 7 2.1428 - 2.0355 1.00 2712 150 0.1236 0.1658 REMARK 3 8 2.0355 - 1.9469 1.00 2716 143 0.1232 0.1368 REMARK 3 9 1.9469 - 1.8720 1.00 2726 141 0.1254 0.1595 REMARK 3 10 1.8720 - 1.8074 1.00 2714 145 0.1249 0.1324 REMARK 3 11 1.8074 - 1.7509 1.00 2738 150 0.1246 0.1473 REMARK 3 12 1.7509 - 1.7008 1.00 2705 136 0.1232 0.1262 REMARK 3 13 1.7008 - 1.6561 1.00 2685 150 0.1192 0.1449 REMARK 3 14 1.6561 - 1.6157 1.00 2713 150 0.1226 0.1327 REMARK 3 15 1.6157 - 1.5789 1.00 2714 172 0.1252 0.1642 REMARK 3 16 1.5789 - 1.5453 1.00 2708 152 0.1273 0.1508 REMARK 3 17 1.5453 - 1.5144 1.00 2705 130 0.1321 0.1831 REMARK 3 18 1.5144 - 1.4858 1.00 2752 141 0.1472 0.1694 REMARK 3 19 1.4858 - 1.4593 0.98 2640 139 0.1509 0.1695 REMARK 3 20 1.4593 - 1.4346 0.93 2485 153 0.1618 0.1630 REMARK 3 21 1.4346 - 1.4114 0.87 2385 104 0.1577 0.1910 REMARK 3 22 1.4114 - 1.3897 0.80 2174 107 0.1708 0.1744 REMARK 3 23 1.3897 - 1.3693 0.70 1918 99 0.1737 0.1831 REMARK 3 24 1.3693 - 1.3500 0.63 1700 91 0.1781 0.1865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2517 REMARK 3 ANGLE : 1.280 3440 REMARK 3 CHIRALITY : 0.074 374 REMARK 3 PLANARITY : 0.007 437 REMARK 3 DIHEDRAL : 13.639 872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4626 -8.7607 19.1310 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0749 REMARK 3 T33: 0.0714 T12: 0.0027 REMARK 3 T13: -0.0002 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.0360 L22: 0.1612 REMARK 3 L33: 0.0833 L12: -0.0111 REMARK 3 L13: 0.0316 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.0642 S13: 0.0511 REMARK 3 S21: -0.0090 S22: 0.0310 S23: 0.0084 REMARK 3 S31: -0.0256 S32: -0.0479 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4638 -18.1917 28.7233 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.1182 REMARK 3 T33: 0.0409 T12: 0.0104 REMARK 3 T13: 0.0016 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.1425 L22: 0.0959 REMARK 3 L33: 0.0830 L12: 0.0204 REMARK 3 L13: -0.0843 L23: -0.0603 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: -0.1769 S13: -0.1184 REMARK 3 S21: 0.0501 S22: 0.0512 S23: -0.0438 REMARK 3 S31: -0.0089 S32: -0.0936 S33: 0.0065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4776 -26.8847 30.5731 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.0911 REMARK 3 T33: 0.0490 T12: 0.0033 REMARK 3 T13: 0.0097 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: 0.1360 REMARK 3 L33: 0.0599 L12: -0.0055 REMARK 3 L13: -0.0054 L23: 0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.1600 S13: -0.0029 REMARK 3 S21: 0.2302 S22: 0.0206 S23: -0.0594 REMARK 3 S31: 0.0570 S32: -0.0067 S33: 0.0141 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8023 -22.5441 7.0105 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0464 REMARK 3 T33: 0.0533 T12: -0.0032 REMARK 3 T13: -0.0020 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3808 L22: 0.2301 REMARK 3 L33: 0.2800 L12: -0.0912 REMARK 3 L13: -0.0445 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0328 S13: -0.0217 REMARK 3 S21: -0.0392 S22: -0.0169 S23: -0.0141 REMARK 3 S31: 0.0304 S32: -0.0088 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2211 -5.7207 10.6451 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.0618 REMARK 3 T33: 0.0776 T12: 0.0036 REMARK 3 T13: 0.0024 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1352 L22: 0.1432 REMARK 3 L33: 0.0708 L12: -0.1213 REMARK 3 L13: 0.0175 L23: 0.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.0027 S13: 0.0469 REMARK 3 S21: -0.0085 S22: -0.0310 S23: -0.0058 REMARK 3 S31: -0.0292 S32: -0.0452 S33: 0.0027 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 28.117 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 15% (W/V) PEG 6000, AND 5% REMARK 280 MPD, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.46650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 160 REMARK 465 SER A 161 REMARK 465 ARG A 162 REMARK 465 LYS A 163 REMARK 465 THR A 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 354 HG1 THR A 373 1.24 REMARK 500 HG SER A 275 H TRP A 317 1.31 REMARK 500 O HOH A 986 O HOH A 1043 2.07 REMARK 500 O HOH A 998 O HOH A 1030 2.08 REMARK 500 O HOH A 941 O HOH A 1005 2.10 REMARK 500 O HOH A 954 O HOH A 1026 2.13 REMARK 500 SG CYS A 165 O HOH A 966 2.15 REMARK 500 O HOH A 931 O HOH A 934 2.16 REMARK 500 O HOH A 761 O HOH A 828 2.18 REMARK 500 O HOH A 987 O HOH A 995 2.19 REMARK 500 O HOH A 806 O HOH A 886 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 946 O HOH A 962 1655 1.74 REMARK 500 O HOH A 1025 O HOH A 1030 1455 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 196 34.48 71.47 REMARK 500 ASP A 203 -107.54 56.30 REMARK 500 SER A 266 -36.99 -177.35 REMARK 500 SER A 278 -126.28 55.58 REMARK 500 TRP A 345 58.21 -102.69 REMARK 500 ASP A 379 -61.40 -122.84 REMARK 500 GLN A 401 136.47 -39.43 REMARK 500 LYS A 412 75.79 58.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GGA RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND MPD AT MUCH HIGHER RESOLUTION. DBREF 4GGC A 161 477 UNP Q12834 CDC20_HUMAN 161 477 SEQADV 4GGC GLY A 160 UNP Q12834 EXPRESSION TAG SEQRES 1 A 318 GLY SER ARG LYS THR CYS ARG TYR ILE PRO SER LEU PRO SEQRES 2 A 318 ASP ARG ILE LEU ASP ALA PRO GLU ILE ARG ASN ASP TYR SEQRES 3 A 318 TYR LEU ASN LEU VAL ASP TRP SER SER GLY ASN VAL LEU SEQRES 4 A 318 ALA VAL ALA LEU ASP ASN SER VAL TYR LEU TRP SER ALA SEQRES 5 A 318 SER SER GLY ASP ILE LEU GLN LEU LEU GLN MET GLU GLN SEQRES 6 A 318 PRO GLY GLU TYR ILE SER SER VAL ALA TRP ILE LYS GLU SEQRES 7 A 318 GLY ASN TYR LEU ALA VAL GLY THR SER SER ALA GLU VAL SEQRES 8 A 318 GLN LEU TRP ASP VAL GLN GLN GLN LYS ARG LEU ARG ASN SEQRES 9 A 318 MET THR SER HIS SER ALA ARG VAL GLY SER LEU SER TRP SEQRES 10 A 318 ASN SER TYR ILE LEU SER SER GLY SER ARG SER GLY HIS SEQRES 11 A 318 ILE HIS HIS HIS ASP VAL ARG VAL ALA GLU HIS HIS VAL SEQRES 12 A 318 ALA THR LEU SER GLY HIS SER GLN GLU VAL CYS GLY LEU SEQRES 13 A 318 ARG TRP ALA PRO ASP GLY ARG HIS LEU ALA SER GLY GLY SEQRES 14 A 318 ASN ASP ASN LEU VAL ASN VAL TRP PRO SER ALA PRO GLY SEQRES 15 A 318 GLU GLY GLY TRP VAL PRO LEU GLN THR PHE THR GLN HIS SEQRES 16 A 318 GLN GLY ALA VAL LYS ALA VAL ALA TRP CYS PRO TRP GLN SEQRES 17 A 318 SER ASN VAL LEU ALA THR GLY GLY GLY THR SER ASP ARG SEQRES 18 A 318 HIS ILE ARG ILE TRP ASN VAL CYS SER GLY ALA CYS LEU SEQRES 19 A 318 SER ALA VAL ASP ALA HIS SER GLN VAL CYS SER ILE LEU SEQRES 20 A 318 TRP SER PRO HIS TYR LYS GLU LEU ILE SER GLY HIS GLY SEQRES 21 A 318 PHE ALA GLN ASN GLN LEU VAL ILE TRP LYS TYR PRO THR SEQRES 22 A 318 MET ALA LYS VAL ALA GLU LEU LYS GLY HIS THR SER ARG SEQRES 23 A 318 VAL LEU SER LEU THR MET SER PRO ASP GLY ALA THR VAL SEQRES 24 A 318 ALA SER ALA ALA ALA ASP GLU THR LEU ARG LEU TRP ARG SEQRES 25 A 318 CYS PHE GLU LEU ASP PRO HET MRD A 501 22 HET MRD A 502 22 HET MRD A 503 22 HET MRD A 504 22 HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 2 MRD 4(C6 H14 O2) FORMUL 6 HOH *443(H2 O) SHEET 1 A 4 ARG A 174 ASP A 177 0 SHEET 2 A 4 THR A 466 TRP A 470 -1 O LEU A 469 N ARG A 174 SHEET 3 A 4 VAL A 458 ALA A 462 -1 N VAL A 458 O TRP A 470 SHEET 4 A 4 VAL A 446 MET A 451 -1 N LEU A 447 O ALA A 461 SHEET 1 B 4 VAL A 190 TRP A 192 0 SHEET 2 B 4 VAL A 197 LEU A 202 -1 O ALA A 199 N ASP A 191 SHEET 3 B 4 SER A 205 SER A 210 -1 O TYR A 207 N VAL A 200 SHEET 4 B 4 ILE A 216 GLN A 221 -1 O LEU A 217 N LEU A 208 SHEET 1 C 4 ILE A 229 TRP A 234 0 SHEET 2 C 4 TYR A 240 THR A 245 -1 O ALA A 242 N ALA A 233 SHEET 3 C 4 GLU A 249 ASP A 254 -1 O GLN A 251 N VAL A 243 SHEET 4 C 4 LYS A 259 THR A 265 -1 O LYS A 259 N ASP A 254 SHEET 1 D 4 VAL A 271 ASN A 277 0 SHEET 2 D 4 ILE A 280 SER A 285 -1 O ILE A 280 N ASN A 277 SHEET 3 D 4 HIS A 289 ASP A 294 -1 O HIS A 293 N LEU A 281 SHEET 4 D 4 HIS A 301 SER A 306 -1 O LEU A 305 N ILE A 290 SHEET 1 E 4 VAL A 312 TRP A 317 0 SHEET 2 E 4 HIS A 323 GLY A 328 -1 O ALA A 325 N ARG A 316 SHEET 3 E 4 VAL A 333 PRO A 337 -1 O TRP A 336 N LEU A 324 SHEET 4 E 4 GLN A 349 PHE A 351 -1 O GLN A 349 N VAL A 335 SHEET 1 F 4 VAL A 358 TRP A 363 0 SHEET 2 F 4 VAL A 370 GLY A 375 -1 O ALA A 372 N ALA A 362 SHEET 3 F 4 HIS A 381 ASN A 386 -1 O TRP A 385 N LEU A 371 SHEET 4 F 4 CYS A 392 ASP A 397 -1 O VAL A 396 N ILE A 382 SHEET 1 G 4 VAL A 402 SER A 408 0 SHEET 2 G 4 GLU A 413 HIS A 418 -1 O GLU A 413 N SER A 408 SHEET 3 G 4 LEU A 425 LYS A 429 -1 O TRP A 428 N LEU A 414 SHEET 4 G 4 LYS A 435 LEU A 439 -1 O VAL A 436 N ILE A 427 CISPEP 1 PHE A 420 ALA A 421 0 4.17 CISPEP 2 TYR A 430 PRO A 431 0 11.21 SITE 1 AC1 3 ASP A 177 ILE A 216 HOH A 921 SITE 1 AC2 7 LEU A 208 SER A 210 ASP A 215 VAL A 255 SITE 2 AC2 7 GLN A 353 HOH A 930 HOH A1007 SITE 1 AC3 3 HIS A 292 SER A 338 ALA A 339 SITE 1 AC4 6 ARG A 286 SER A 309 PRO A 453 ASP A 454 SITE 2 AC4 6 HOH A 802 HOH A 917 CRYST1 41.281 86.933 48.339 90.00 112.97 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024224 0.000000 0.010268 0.00000 SCALE2 0.000000 0.011503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022469 0.00000