HEADER CHAPERONE/PEPTIDE BINDING PROTEIN 03-MAY-12 4EZP TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF E.COLI DNAK IN TITLE 2 COMPLEX WITH A3-APO(RESIDUES 1 TO 20) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 389-607; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: APO-MONOMER; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0014, DNAK, GROP, GRPF, JW0013, SEG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS CHAPERONE, CHAPERONE-PEPTIDE BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,N.STRAETER REVDAT 4 28-FEB-24 4EZP 1 REMARK REVDAT 3 15-NOV-17 4EZP 1 REMARK REVDAT 2 17-JUL-13 4EZP 1 JRNL REVDAT 1 17-APR-13 4EZP 0 JRNL AUTH M.ZAHN,N.BERTHOLD,B.KIESLICH,D.KNAPPE,R.HOFFMANN,N.STRATER JRNL TITL STRUCTURAL STUDIES ON THE FORWARD AND REVERSE BINDING MODES JRNL TITL 2 OF PEPTIDES TO THE CHAPERONE DNAK. JRNL REF J.MOL.BIOL. V. 425 2463 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23562829 JRNL DOI 10.1016/J.JMB.2013.03.041 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC WITH 3DPO REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 64288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4517 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3520 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4762 ; 1.952 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.134 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;38.569 ;26.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;15.633 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2600 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): -32.9712 37.2317 -21.5653 REMARK 3 T TENSOR REMARK 3 T11: 0.0830 T22: 0.1123 REMARK 3 T33: 0.0955 T12: -0.0001 REMARK 3 T13: 0.0038 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.0046 L22: 0.1505 REMARK 3 L33: 0.1617 L12: -0.1257 REMARK 3 L13: -0.2509 L23: 0.0769 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0272 S13: 0.0979 REMARK 3 S21: -0.0103 S22: 0.0250 S23: 0.0101 REMARK 3 S31: 0.0034 S32: -0.0513 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 507 A 554 REMARK 3 ORIGIN FOR THE GROUP (A): -36.6092 22.1742 -14.7816 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.1007 REMARK 3 T33: 0.1468 T12: -0.0244 REMARK 3 T13: 0.0067 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.7677 L22: 0.9821 REMARK 3 L33: 0.8150 L12: 1.2166 REMARK 3 L13: -0.9678 L23: -0.5583 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: -0.0210 S13: 0.1374 REMARK 3 S21: -0.0016 S22: 0.0604 S23: 0.1633 REMARK 3 S31: 0.0747 S32: -0.0590 S33: -0.0945 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 555 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): -53.6538 16.3487 -2.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.2716 REMARK 3 T33: 0.2476 T12: -0.1092 REMARK 3 T13: 0.0789 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 7.1682 L22: 1.7459 REMARK 3 L33: 1.8388 L12: 0.9790 REMARK 3 L13: -1.3042 L23: -0.7831 REMARK 3 S TENSOR REMARK 3 S11: 0.1914 S12: -0.6110 S13: 0.3593 REMARK 3 S21: 0.2781 S22: -0.0095 S23: 0.3646 REMARK 3 S31: 0.0934 S32: -0.1701 S33: -0.1819 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 389 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4839 19.1600 -5.7952 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0905 REMARK 3 T33: 0.1092 T12: -0.0187 REMARK 3 T13: -0.0020 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.3965 L22: 0.9437 REMARK 3 L33: 0.4320 L12: -0.2571 REMARK 3 L13: -0.2056 L23: 0.4691 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.0765 S13: -0.0512 REMARK 3 S21: -0.0472 S22: 0.0270 S23: -0.0996 REMARK 3 S31: -0.0172 S32: 0.0369 S33: -0.0470 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 509 B 556 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8491 6.5731 -9.4928 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1126 REMARK 3 T33: 0.1919 T12: -0.0683 REMARK 3 T13: -0.0063 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.1552 L22: 2.2726 REMARK 3 L33: 0.9904 L12: -0.8441 REMARK 3 L13: -0.3798 L23: 0.9774 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: -0.0373 S13: -0.2033 REMARK 3 S21: -0.0658 S22: 0.1325 S23: 0.1914 REMARK 3 S31: 0.0555 S32: -0.0549 S33: -0.0359 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 557 B 605 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5073 -10.5322 -19.7285 REMARK 3 T TENSOR REMARK 3 T11: 0.2204 T22: 0.1995 REMARK 3 T33: 0.1546 T12: -0.1293 REMARK 3 T13: -0.0364 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 5.0333 L22: 2.5066 REMARK 3 L33: 3.2230 L12: -0.7701 REMARK 3 L13: -2.0789 L23: 1.6244 REMARK 3 S TENSOR REMARK 3 S11: -0.2170 S12: 0.5519 S13: -0.2685 REMARK 3 S21: -0.2726 S22: 0.0317 S23: 0.3253 REMARK 3 S31: -0.0485 S32: -0.1584 S33: 0.1853 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 13 REMARK 3 ORIGIN FOR THE GROUP (A): -42.1302 32.6021 -14.2550 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: 0.0714 REMARK 3 T33: 0.0645 T12: -0.0008 REMARK 3 T13: 0.0017 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 5.5507 L22: 3.1255 REMARK 3 L33: 7.1924 L12: 0.2462 REMARK 3 L13: -0.2249 L23: 3.4062 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: 0.3324 S13: -0.1285 REMARK 3 S21: 0.0036 S22: 0.0914 S23: 0.0545 REMARK 3 S31: 0.0823 S32: -0.0999 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 18 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5167 10.2292 -16.8484 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.1009 REMARK 3 T33: 0.2265 T12: -0.0265 REMARK 3 T13: -0.0284 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.6930 L22: 8.6513 REMARK 3 L33: 31.7575 L12: -4.8126 REMARK 3 L13: 6.3047 L23: -11.7589 REMARK 3 S TENSOR REMARK 3 S11: 0.4183 S12: -0.0338 S13: -0.1356 REMARK 3 S21: -0.7322 S22: 0.0912 S23: 0.1613 REMARK 3 S31: 1.2867 S32: -0.3119 S33: -0.5095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4EZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI - 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PDB ENTRY 3DPO REMARK 200 SOFTWARE USED: REFMAC WITH 3DPO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.84050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.46200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.46200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 44.79200 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -44.79200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE APO-MONOMER IS POLYPEPTIDE, A MEMBER OF ANTIMICROBIAL CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: APO-MONOMER REMARK 400 CHAIN: D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 600 REMARK 465 ILE A 601 REMARK 465 ALA A 602 REMARK 465 GLN A 603 REMARK 465 GLN A 604 REMARK 465 GLN A 605 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 ALC C 1 REMARK 465 ARG C 2 REMARK 465 PRO C 3 REMARK 465 ASP C 4 REMARK 465 LYS C 5 REMARK 465 PRO C 6 REMARK 465 ARG C 14 REMARK 465 PRO C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 PRO C 18 REMARK 465 VAL C 19 REMARK 465 ARG C 20 REMARK 465 ALC D 1 REMARK 465 ARG D 2 REMARK 465 PRO D 3 REMARK 465 ASP D 4 REMARK 465 LYS D 5 REMARK 465 VAL D 19 REMARK 465 ARG D 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 422 CG HIS A 422 CD2 0.057 REMARK 500 HIS A 439 NE2 HIS A 439 CD2 -0.072 REMARK 500 HIS A 541 CG HIS A 541 CD2 0.058 REMARK 500 HIS A 544 CG HIS A 544 CD2 0.058 REMARK 500 HIS B 541 CG HIS B 541 CD2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 479 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 441 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP B 479 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 PRO C 8 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 548 33.48 -75.78 REMARK 500 GLN A 549 -43.85 -137.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF APO-MONOMER REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF APO-MONOMER REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKX RELATED DB: PDB REMARK 900 RELATED ID: 1DKY RELATED DB: PDB REMARK 900 RELATED ID: 1DKZ RELATED DB: PDB REMARK 900 RELATED ID: 3DPO RELATED DB: PDB REMARK 900 RELATED ID: 3DPP RELATED DB: PDB REMARK 900 RELATED ID: 3DPQ RELATED DB: PDB REMARK 900 RELATED ID: 3QNJ RELATED DB: PDB REMARK 900 RELATED ID: 4E81 RELATED DB: PDB REMARK 900 RELATED ID: 4EZN RELATED DB: PDB REMARK 900 RELATED ID: 4EZO RELATED DB: PDB REMARK 900 RELATED ID: 4EZQ RELATED DB: PDB REMARK 900 RELATED ID: 4EZR RELATED DB: PDB REMARK 900 RELATED ID: 4EZS RELATED DB: PDB REMARK 900 RELATED ID: 4EZT RELATED DB: PDB REMARK 900 RELATED ID: 4EZU RELATED DB: PDB REMARK 900 RELATED ID: 4EZV RELATED DB: PDB REMARK 900 RELATED ID: 4EZW RELATED DB: PDB REMARK 900 RELATED ID: 4EZX RELATED DB: PDB REMARK 900 RELATED ID: 4EZY RELATED DB: PDB REMARK 900 RELATED ID: 4EZZ RELATED DB: PDB REMARK 900 RELATED ID: 4F00 RELATED DB: PDB REMARK 900 RELATED ID: 4F01 RELATED DB: PDB DBREF 4EZP A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4EZP B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4EZP C 1 20 PDB 4EZP 4EZP 1 20 DBREF 4EZP D 1 20 PDB 4EZP 4EZP 1 20 SEQRES 1 A 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 A 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 A 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 A 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 A 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 A 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 A 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 A 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 A 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 A 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 A 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 A 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 A 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 A 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 A 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 A 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 A 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 B 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 B 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 B 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 B 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 B 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 B 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 B 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 B 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 B 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 B 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 B 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 B 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 B 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 B 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 B 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 B 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 20 ALC ARG PRO ASP LYS PRO ARG PRO TYR LEU PRO ARG PRO SEQRES 2 C 20 ARG PRO PRO ARG PRO VAL ARG SEQRES 1 D 20 ALC ARG PRO ASP LYS PRO ARG PRO TYR LEU PRO ARG PRO SEQRES 2 D 20 ARG PRO PRO ARG PRO VAL ARG HET SO4 A 701 5 HET SO4 B 701 5 HET SO4 C 101 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *366(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLY A 554 1 33 HELIX 4 4 ASP A 555 LEU A 557 5 3 HELIX 5 5 PRO A 558 LYS A 577 1 20 HELIX 6 6 ASP A 580 GLN A 593 1 14 HELIX 7 7 ARG B 447 ASN B 451 5 5 HELIX 8 8 ASN B 508 ASN B 522 1 15 HELIX 9 9 ASN B 522 GLY B 554 1 33 HELIX 10 10 ASP B 555 LEU B 557 5 3 HELIX 11 11 PRO B 558 LYS B 577 1 20 HELIX 12 12 ASP B 580 VAL B 594 1 15 HELIX 13 13 SER B 595 GLN B 604 1 10 SHEET 1 A 2 VAL A 394 THR A 395 0 SHEET 2 A 2 THR A 416 THR A 417 -1 O THR A 416 N THR A 395 SHEET 1 B 4 VAL A 407 ILE A 412 0 SHEET 2 B 4 LEU A 399 THR A 403 -1 N ILE A 401 O THR A 409 SHEET 3 B 4 VAL A 436 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 B 4 LYS A 452 LEU A 459 -1 O PHE A 457 N ILE A 438 SHEET 1 C 5 GLU A 496 ILE A 501 0 SHEET 2 C 5 LEU A 484 ASP A 490 -1 N LEU A 484 O ILE A 501 SHEET 3 C 5 ILE A 472 ILE A 478 -1 N ASP A 477 O HIS A 485 SHEET 4 C 5 THR A 420 THR A 428 -1 N PHE A 426 O ILE A 472 SHEET 5 C 5 TYR C 9 LEU C 10 1 O LEU C 10 N SER A 427 SHEET 1 D 4 VAL B 407 ILE B 412 0 SHEET 2 D 4 LEU B 399 THR B 403 -1 N LEU B 399 O LEU B 411 SHEET 3 D 4 ALA B 435 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 D 4 LYS B 452 ASP B 460 -1 O PHE B 457 N ILE B 438 SHEET 1 E 5 GLU B 496 ILE B 501 0 SHEET 2 E 5 LEU B 484 ASP B 490 -1 N LEU B 484 O ILE B 501 SHEET 3 E 5 ILE B 472 ILE B 478 -1 N GLU B 473 O LYS B 489 SHEET 4 E 5 THR B 420 THR B 428 -1 N PHE B 426 O ILE B 472 SHEET 5 E 5 TYR D 9 LEU D 10 1 O LEU D 10 N SER B 427 CISPEP 1 ILE A 418 PRO A 419 0 3.09 CISPEP 2 ILE B 418 PRO B 419 0 -3.26 SITE 1 AC1 5 GLN A 513 ARG A 517 HOH A 973 PRO D 16 SITE 2 AC1 5 ARG D 17 SITE 1 AC2 5 LYS B 502 SER B 504 HOH B 827 HOH B 967 SITE 2 AC2 5 HOH B 968 SITE 1 AC3 5 MET A 404 GLY A 405 PRO C 11 ARG C 12 SITE 2 AC3 5 HOH C 204 SITE 1 AC4 19 ILE A 401 GLU A 402 THR A 403 MET A 404 SITE 2 AC4 19 GLN A 424 VAL A 425 PHE A 426 SER A 427 SITE 3 AC4 19 THR A 428 ALA A 429 GLU A 430 GLN A 433 SITE 4 AC4 19 ARG A 467 GLN A 471 ASP A 540 HOH A 803 SITE 5 AC4 19 SO4 C 101 HOH C 201 HOH C 203 SITE 1 AC5 32 VAL A 516 ARG A 517 ASP A 518 GLU A 520 SITE 2 AC5 32 ALA A 521 ASN A 522 SO4 A 701 ILE B 401 SITE 3 AC5 32 THR B 403 MET B 404 GLN B 424 VAL B 425 SITE 4 AC5 32 PHE B 426 SER B 427 THR B 428 ALA B 429 SITE 5 AC5 32 GLN B 433 ALA B 435 VAL B 436 THR B 437 SITE 6 AC5 32 ILE B 438 ASN B 458 GLY B 468 MET B 469 SITE 7 AC5 32 PRO B 470 GLN B 471 HOH B 962 HOH D 101 SITE 8 AC5 32 HOH D 102 HOH D 103 HOH D 104 HOH D 105 CRYST1 77.681 160.924 44.792 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022326 0.00000