HEADER HYDROLASE/PEPTIDE 28-NOV-13 4CH2 TITLE LOW-SALT CRYSTAL STRUCTURE OF A THROMBIN-GPIBALPHA PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN, LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: COAGULATION FACTOR II; COMPND 5 EC: 3.4.21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THROMBIN, HEAVY CHAIN; COMPND 9 CHAIN: B, D; COMPND 10 EC: 3.4.21.5; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PLATELET GLYCOPROTEIN IB ALPHA CHAIN, RESIDUES 287-300; COMPND 14 CHAIN: P, Q; COMPND 15 FRAGMENT: C-TERMINAL FRAGMENT OF GPIBALPHA, 271-284; COMPND 16 SYNONYM: GP-IB ALPHA, GPIB-ALPHA, GPIBA, GLYCOPROTEIN IBALPHA, COMPND 17 ANTIGEN CD42B-ALPHA, GPIBALPHA PEPTIDE; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: ALL THREE TYROSINE RESIDUES ARE PHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR, PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR, PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET23; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.C.LECHTENBERG,S.M.V.FREUND,J.A.HUNTINGTON REVDAT 5 20-DEC-23 4CH2 1 REMARK LINK REVDAT 4 12-FEB-14 4CH2 1 JRNL REVDAT 3 25-DEC-13 4CH2 1 REMARK REVDAT 2 18-DEC-13 4CH2 1 JRNL REVDAT 1 11-DEC-13 4CH2 0 JRNL AUTH B.C.LECHTENBERG,S.M.V.FREUND,J.A.HUNTINGTON JRNL TITL GPIBALPHA INTERACTS EXCLUSIVELY WITH EXOSITE II OF THROMBIN JRNL REF J.MOL.BIOL. V. 426 881 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24316004 JRNL DOI 10.1016/J.JMB.2013.11.027 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 68655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4685 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5076 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4691 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6910 ; 2.067 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10786 ; 1.411 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 618 ; 7.164 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;32.742 ;23.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 825 ;12.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;12.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5722 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 290 315 C 290 315 1070 0.12 0.05 REMARK 3 2 B 321 578 D 321 578 14930 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8176 -3.5863 -1.0791 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.0288 REMARK 3 T33: 0.1562 T12: -0.0103 REMARK 3 T13: 0.0525 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 12.0810 L22: 0.2311 REMARK 3 L33: 6.6807 L12: -1.3830 REMARK 3 L13: 3.8499 L23: -1.0603 REMARK 3 S TENSOR REMARK 3 S11: -0.1116 S12: 0.2346 S13: 0.7964 REMARK 3 S21: 0.0515 S22: -0.0164 S23: -0.0908 REMARK 3 S31: -0.4865 S32: -0.0351 S33: 0.1280 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8041 -9.9897 10.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.0328 T22: 0.0611 REMARK 3 T33: 0.1205 T12: -0.0152 REMARK 3 T13: -0.0039 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.6362 L22: 2.5614 REMARK 3 L33: 1.1410 L12: 0.3436 REMARK 3 L13: 1.4020 L23: -0.2155 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: -0.0215 S13: 0.1589 REMARK 3 S21: 0.0780 S22: -0.0611 S23: -0.3395 REMARK 3 S31: -0.0585 S32: 0.1993 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 305 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0029 -23.6879 8.8133 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.0286 REMARK 3 T33: 0.0861 T12: 0.0265 REMARK 3 T13: -0.0118 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 5.5869 L22: 8.0885 REMARK 3 L33: 4.8623 L12: 3.8954 REMARK 3 L13: 3.3924 L23: 4.6043 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.1875 S13: -0.1007 REMARK 3 S21: 0.0454 S22: 0.0840 S23: -0.5149 REMARK 3 S31: 0.2098 S32: 0.2761 S33: -0.0930 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 321 B 384 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9455 -9.5448 15.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0689 REMARK 3 T33: 0.0723 T12: -0.0006 REMARK 3 T13: -0.0021 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.9644 L22: 0.9229 REMARK 3 L33: 0.5681 L12: 0.4264 REMARK 3 L13: -0.1201 L23: 0.1318 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -0.1639 S13: 0.2330 REMARK 3 S21: 0.1143 S22: -0.0294 S23: 0.0404 REMARK 3 S31: -0.0035 S32: -0.0665 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 385 B 440 REMARK 3 ORIGIN FOR THE GROUP (A): -24.0107 -6.6535 11.6069 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0198 REMARK 3 T33: 0.0492 T12: 0.0075 REMARK 3 T13: 0.0048 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.1000 L22: 1.5101 REMARK 3 L33: 0.8507 L12: 0.4725 REMARK 3 L13: 0.0936 L23: 0.1976 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.1246 S13: 0.2960 REMARK 3 S21: 0.1292 S22: -0.0421 S23: -0.0258 REMARK 3 S31: -0.0525 S32: -0.0461 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 441 B 578 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1877 -22.0713 7.6016 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.0343 REMARK 3 T33: 0.0052 T12: -0.0016 REMARK 3 T13: -0.0040 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.2933 L22: 0.7916 REMARK 3 L33: 0.7159 L12: -0.0127 REMARK 3 L13: -0.0632 L23: -0.1617 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.0390 S13: -0.0385 REMARK 3 S21: -0.0184 S22: -0.0274 S23: -0.0384 REMARK 3 S31: 0.0496 S32: -0.0194 S33: 0.0086 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 290 C 297 REMARK 3 ORIGIN FOR THE GROUP (A): -70.3917 -1.4521 35.1707 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.0800 REMARK 3 T33: 0.0628 T12: -0.0124 REMARK 3 T13: 0.0220 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 4.1690 L22: 2.3793 REMARK 3 L33: 12.2662 L12: -2.0588 REMARK 3 L13: 2.6237 L23: -1.6851 REMARK 3 S TENSOR REMARK 3 S11: -0.2183 S12: -0.2573 S13: 0.3392 REMARK 3 S21: 0.3718 S22: 0.1121 S23: -0.1433 REMARK 3 S31: -0.5174 S32: 0.2514 S33: 0.1062 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 298 C 305 REMARK 3 ORIGIN FOR THE GROUP (A): -78.8220 -2.2582 28.6664 REMARK 3 T TENSOR REMARK 3 T11: 0.0345 T22: 0.0622 REMARK 3 T33: 0.0466 T12: 0.0410 REMARK 3 T13: 0.0076 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 6.4202 L22: 4.5254 REMARK 3 L33: 5.1785 L12: -0.3975 REMARK 3 L13: -1.6967 L23: 0.4695 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.1842 S13: 0.0342 REMARK 3 S21: -0.0087 S22: 0.0626 S23: 0.3490 REMARK 3 S31: -0.1869 S32: -0.2470 S33: -0.0666 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 306 C 318 REMARK 3 ORIGIN FOR THE GROUP (A): -77.8921 -17.2184 29.4283 REMARK 3 T TENSOR REMARK 3 T11: 0.0242 T22: 0.0465 REMARK 3 T33: 0.0821 T12: -0.0064 REMARK 3 T13: 0.0064 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.4403 L22: 7.7792 REMARK 3 L33: 5.6582 L12: -0.7323 REMARK 3 L13: 0.3251 L23: -3.7984 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.0987 S13: -0.2549 REMARK 3 S21: -0.1026 S22: 0.1387 S23: 0.3908 REMARK 3 S31: 0.2093 S32: -0.2191 S33: -0.0838 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 321 D 373 REMARK 3 ORIGIN FOR THE GROUP (A): -55.2053 -7.5094 23.6420 REMARK 3 T TENSOR REMARK 3 T11: 0.0608 T22: 0.0459 REMARK 3 T33: 0.0149 T12: 0.0000 REMARK 3 T13: 0.0136 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.2868 L22: 0.8905 REMARK 3 L33: 0.8468 L12: -0.6637 REMARK 3 L13: -0.3302 L23: 0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.0661 S13: 0.0945 REMARK 3 S21: -0.0887 S22: -0.0410 S23: -0.1112 REMARK 3 S31: -0.0354 S32: 0.0511 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 374 D 510 REMARK 3 ORIGIN FOR THE GROUP (A): -58.3389 -11.7888 27.2603 REMARK 3 T TENSOR REMARK 3 T11: 0.0489 T22: 0.0351 REMARK 3 T33: 0.0142 T12: 0.0043 REMARK 3 T13: 0.0052 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.0025 L22: 0.6428 REMARK 3 L33: 0.6414 L12: -0.1831 REMARK 3 L13: -0.0789 L23: -0.0521 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0135 S13: -0.0729 REMARK 3 S21: -0.0043 S22: -0.0192 S23: -0.0271 REMARK 3 S31: -0.0015 S32: 0.0564 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 511 D 578 REMARK 3 ORIGIN FOR THE GROUP (A): -61.1954 -17.1950 30.8095 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0205 REMARK 3 T33: 0.0323 T12: 0.0048 REMARK 3 T13: 0.0084 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.3935 L22: 0.6408 REMARK 3 L33: 0.6539 L12: -0.0690 REMARK 3 L13: -0.0553 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.0371 S13: -0.1927 REMARK 3 S21: 0.0119 S22: -0.0168 S23: 0.0493 REMARK 3 S31: 0.0668 S32: 0.0422 S33: 0.0051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. DISORDERED REGIONS AND SIDE REMARK 3 CHAINS ARE NOT MODELED. REMARK 4 REMARK 4 4CH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290059106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PPB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM FORMATE, 16% PEG-3350, PH REMARK 280 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.78500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.78500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2196 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 317 REMARK 465 ASP A 318 REMARK 465 GLY A 319 REMARK 465 ARG A 320 REMARK 465 GLU B 579 REMARK 465 THR C 285 REMARK 465 PHE C 286 REMARK 465 GLY C 287 REMARK 465 SER C 288 REMARK 465 GLY C 289 REMARK 465 GLY C 319 REMARK 465 ARG C 320 REMARK 465 TRP D 468 REMARK 465 THR D 469 REMARK 465 ALA D 470 REMARK 465 ASN D 471 REMARK 465 VAL D 472 REMARK 465 GLY D 473 REMARK 465 LYS D 474 REMARK 465 GLU D 579 REMARK 465 GLY P 271 REMARK 465 ASP P 272 REMARK 465 THR P 273 REMARK 465 GLU P 281 REMARK 465 GLU P 282 REMARK 465 ASP P 283 REMARK 465 THR P 284 REMARK 465 GLY Q 271 REMARK 465 ASP Q 272 REMARK 465 GLU Q 281 REMARK 465 GLU Q 282 REMARK 465 ASP Q 283 REMARK 465 THR Q 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 301 CD CE NZ REMARK 470 LYS A 302 CE NZ REMARK 470 LYS A 307 CD CE NZ REMARK 470 ARG A 310 CD NE CZ NH1 NH2 REMARK 470 LEU A 313 CD1 CD2 REMARK 470 SER B 342 OG REMARK 470 GLN B 344 CG CD OE1 NE2 REMARK 470 ASN B 377 CG OD1 ND2 REMARK 470 SER B 387 OG REMARK 470 THR B 389 OG1 CG2 REMARK 470 ARG B 390 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 403 CG CD CE NZ REMARK 470 LYS B 426 CE NZ REMARK 470 LYS B 427 CD CE NZ REMARK 470 LYS C 307 CD CE NZ REMARK 470 ARG C 310 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 318 CG OD1 OD2 REMARK 470 SER D 342 OG REMARK 470 ASN D 377 CG OD1 ND2 REMARK 470 LYS D 426 CE NZ REMARK 470 LYS D 427 CG CD CE NZ REMARK 470 LYS D 465 CD CE NZ REMARK 470 GLN D 476 CG CD OE1 NE2 REMARK 470 LYS D 494 CE NZ REMARK 470 ARG D 498 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 516 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 2022 O HOH D 2156 1.94 REMARK 500 CZ3 TRP B 461 O SER B 478 2.00 REMARK 500 O HOH B 2118 O HOH B 2119 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 443 O HOH D 2044 4445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 316 CG TYR A 316 CD2 0.100 REMARK 500 TYR A 316 CZ TYR A 316 OH 0.139 REMARK 500 TRP D 461 CB TRP D 461 CG -0.128 REMARK 500 SER D 525 CB SER D 525 OG 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 418 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PRO B 477 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 ASP B 554 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG D 390 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG D 390 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP D 554 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP Q 277 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP Q 277 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 299 -88.40 -128.40 REMARK 500 TYR B 367 83.64 -150.32 REMARK 500 ASN B 373 80.35 -157.62 REMARK 500 ASN B 394 -2.44 80.94 REMARK 500 ILE B 395 -53.74 -120.89 REMARK 500 ASN B 415 11.77 -142.98 REMARK 500 LYS B 474 -62.09 -151.97 REMARK 500 PHE C 299 -89.00 -127.55 REMARK 500 TYR D 367 84.21 -152.87 REMARK 500 ASN D 373 77.65 -156.78 REMARK 500 ASN D 394 -0.22 77.96 REMARK 500 ASN D 411 79.13 -101.21 REMARK 500 GLU D 414 -64.03 -132.57 REMARK 500 ASN D 415 14.06 -143.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 475 GLN B 476 -138.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH P2005 DISTANCE = 7.02 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 DEOXY-CHLOROMETHYL-ARGININE (ACL): MODIFIED BY REACTION REMARK 600 WITH CATALYTIC HIS AND SER REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B3001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 553 O REMARK 620 2 LYS B 556 O 94.1 REMARK 620 3 HOH B2170 O 161.6 70.8 REMARK 620 4 HOH B2172 O 88.2 95.8 83.1 REMARK 620 5 HOH B2187 O 96.5 83.3 92.1 175.2 REMARK 620 6 HOH B2205 O 103.9 162.0 91.5 85.0 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D3001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG D 553 O REMARK 620 2 LYS D 556 O 92.0 REMARK 620 3 HOH D2142 O 160.7 72.0 REMARK 620 4 HOH D2144 O 88.9 95.8 82.2 REMARK 620 5 HOH D2150 O 96.3 82.3 92.3 174.5 REMARK 620 6 HOH D2167 O 104.5 163.5 91.9 85.7 94.7 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0G6 B 1001 REMARK 630 0G6 D 1001 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO AR7 0QE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Ligand 0G6 B1001 bound to SER B REMARK 800 525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Ligand 0G6 D1001 bound to SER D REMARK 800 525 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CH8 RELATED DB: PDB REMARK 900 HIGH-SALT CRYSTAL STRUCTURE OF A THROMBIN-GPIBALPHA PEPTIDE COMPLEX DBREF 4CH2 A 285 320 UNP P00734 THRB_HUMAN 328 363 DBREF 4CH2 B 321 579 UNP P00734 THRB_HUMAN 364 622 DBREF 4CH2 C 285 320 UNP P00734 THRB_HUMAN 328 363 DBREF 4CH2 D 321 579 UNP P00734 THRB_HUMAN 364 622 DBREF 4CH2 P 271 284 UNP P07359 GP1BA_HUMAN 287 300 DBREF 4CH2 Q 271 284 UNP P07359 GP1BA_HUMAN 287 300 SEQRES 1 A 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 A 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 A 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 C 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 C 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 D 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 D 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 D 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 D 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 D 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 D 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 D 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 D 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 D 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 D 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 D 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 D 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 D 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 D 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 D 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 D 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 D 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 D 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 D 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 D 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 P 14 GLY ASP THR ASP LEU PTR ASP PTR PTR PRO GLU GLU ASP SEQRES 2 P 14 THR SEQRES 1 Q 14 GLY ASP THR ASP LEU PTR ASP PTR PTR PRO GLU GLU ASP SEQRES 2 Q 14 THR MODRES 4CH2 PTR P 276 TYR O-PHOSPHOTYROSINE MODRES 4CH2 PTR P 278 TYR O-PHOSPHOTYROSINE MODRES 4CH2 PTR P 279 TYR O-PHOSPHOTYROSINE MODRES 4CH2 PTR Q 276 TYR O-PHOSPHOTYROSINE MODRES 4CH2 PTR Q 278 TYR O-PHOSPHOTYROSINE MODRES 4CH2 PTR Q 279 TYR O-PHOSPHOTYROSINE HET PTR P 276 16 HET PTR P 278 16 HET PTR P 279 16 HET PTR Q 276 16 HET PTR Q 278 16 HET PTR Q 279 16 HET GOL A1317 6 HET 0G6 B1001 30 HET GOL B1579 6 HET NA B3001 1 HET 0G6 D1001 30 HET GOL D1579 6 HET GOL D1580 6 HET NA D3001 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM GOL GLYCEROL HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0G6 PROLINAMIDE HETNAM NA SODIUM ION HETSYN PTR PHOSPHONOTYROSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 0G6 PPACK FORMUL 5 PTR 6(C9 H12 N O6 P) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 8 0G6 2(C21 H34 CL N6 O3 1+) FORMUL 10 NA 2(NA 1+) FORMUL 15 HOH *473(H2 O) HELIX 1 1 PHE A 299 SER A 303 5 5 HELIX 2 2 THR A 308 TYR A 316 1 9 HELIX 3 3 ALA B 361 CYS B 364 5 4 HELIX 4 4 PRO B 368 ASP B 371 5 4 HELIX 5 5 THR B 375 ASN B 377 5 3 HELIX 6 6 ASP B 442 LEU B 450 1 9 HELIX 7 7 GLU B 489 SER B 496 1 8 HELIX 8 8 LYS B 511 GLY B 515 5 5 HELIX 9 9 LEU B 566 PHE B 577 1 12 HELIX 10 10 PHE C 299 SER C 303 5 5 HELIX 11 11 THR C 308 ASP C 318 1 11 HELIX 12 12 ALA D 361 CYS D 364 5 4 HELIX 13 13 PRO D 368 ASP D 371 5 4 HELIX 14 14 THR D 375 ASN D 377 5 3 HELIX 15 15 ASP D 442 LEU D 450 1 9 HELIX 16 16 GLU D 489 SER D 496 1 8 HELIX 17 17 LEU D 566 GLY D 578 1 13 SHEET 1 BA 7 SER B 325 ASP B 326 0 SHEET 2 BA 7 GLN B 481 PRO B 486 -1 O VAL B 482 N SER B 325 SHEET 3 BA 7 LYS B 455 GLY B 460 -1 O GLY B 456 N LEU B 485 SHEET 4 BA 7 PRO B 528 LYS B 532 -1 O PRO B 528 N THR B 459 SHEET 5 BA 7 TRP B 539 TRP B 547 -1 O TYR B 540 N MET B 531 SHEET 6 BA 7 GLY B 558 HIS B 562 -1 O PHE B 559 N SER B 546 SHEET 7 BA 7 MET B 505 ALA B 508 -1 O PHE B 506 N TYR B 560 SHEET 1 BB 7 LYS B 397 SER B 399 0 SHEET 2 BB 7 LEU B 379 ILE B 383 -1 O VAL B 381 N SER B 399 SHEET 3 BB 7 GLN B 335 ARG B 340 -1 O MET B 337 N ARG B 382 SHEET 4 BB 7 GLU B 345 LEU B 352 -1 O GLU B 345 N ARG B 340 SHEET 5 BB 7 TRP B 357 THR B 360 -1 O LEU B 359 N SER B 351 SHEET 6 BB 7 ALA B 421 LEU B 425 -1 O ALA B 421 N THR B 360 SHEET 7 BB 7 LEU B 401 ILE B 406 -1 N GLU B 402 O LYS B 424 SHEET 1 BC 2 LEU B 366 TYR B 367 0 SHEET 2 BC 2 LYS B 372 ASN B 373 -1 O LYS B 372 N TYR B 367 SHEET 1 DA 7 SER D 325 ASP D 326 0 SHEET 2 DA 7 GLN D 481 PRO D 486 -1 O VAL D 482 N SER D 325 SHEET 3 DA 7 LYS D 455 GLY D 460 -1 O GLY D 456 N LEU D 485 SHEET 4 DA 7 PRO D 528 LYS D 532 -1 O PRO D 528 N THR D 459 SHEET 5 DA 7 TRP D 539 TRP D 547 -1 O TYR D 540 N MET D 531 SHEET 6 DA 7 GLY D 558 HIS D 562 -1 O PHE D 559 N SER D 546 SHEET 7 DA 7 MET D 505 ALA D 508 -1 O PHE D 506 N TYR D 560 SHEET 1 DB 7 LYS D 397 SER D 399 0 SHEET 2 DB 7 LEU D 379 ILE D 383 -1 O VAL D 381 N SER D 399 SHEET 3 DB 7 GLN D 335 ARG D 340 -1 O MET D 337 N ARG D 382 SHEET 4 DB 7 GLU D 345 LEU D 352 -1 O GLU D 345 N ARG D 340 SHEET 5 DB 7 TRP D 357 THR D 360 -1 O LEU D 359 N SER D 351 SHEET 6 DB 7 ALA D 421 LEU D 425 -1 O ALA D 421 N THR D 360 SHEET 7 DB 7 LEU D 401 ILE D 406 -1 N GLU D 402 O LYS D 424 SHEET 1 DC 2 LEU D 366 TYR D 367 0 SHEET 2 DC 2 LYS D 372 ASN D 373 -1 O LYS D 372 N TYR D 367 SSBOND 1 CYS A 293 CYS B 439 1555 1555 2.06 SSBOND 2 CYS B 348 CYS B 364 1555 1555 2.04 SSBOND 3 CYS B 493 CYS B 507 1555 1555 2.01 SSBOND 4 CYS B 521 CYS B 551 1555 1555 2.04 SSBOND 5 CYS C 293 CYS D 439 1555 1555 2.07 SSBOND 6 CYS D 348 CYS D 364 1555 1555 2.03 SSBOND 7 CYS D 493 CYS D 507 1555 1555 2.00 SSBOND 8 CYS D 521 CYS D 551 1555 1555 2.03 LINK NE2 HIS B 363 C3 0G6 B1001 1555 1555 1.71 LINK OG SER B 525 C2 0G6 B1001 1555 1555 1.43 LINK NE2 HIS D 363 C3 0G6 D1001 1555 1555 1.74 LINK OG SER D 525 C2 0G6 D1001 1555 1555 1.46 LINK C LEU P 275 N PTR P 276 1555 1555 1.30 LINK C PTR P 276 N ASP P 277 1555 1555 1.34 LINK C ASP P 277 N PTR P 278 1555 1555 1.34 LINK C PTR P 278 N PTR P 279 1555 1555 1.33 LINK C PTR P 279 N PRO P 280 1555 1555 1.37 LINK C LEU Q 275 N PTR Q 276 1555 1555 1.30 LINK C PTR Q 276 N ASP Q 277 1555 1555 1.35 LINK C ASP Q 277 N PTR Q 278 1555 1555 1.33 LINK C PTR Q 278 N PTR Q 279 1555 1555 1.34 LINK C PTR Q 279 N PRO Q 280 1555 1555 1.35 LINK O ARG B 553 NA NA B3001 1555 1555 2.34 LINK O LYS B 556 NA NA B3001 1555 1555 2.39 LINK O HOH B2170 NA NA B3001 1555 1555 2.41 LINK O HOH B2172 NA NA B3001 1555 1555 2.66 LINK O HOH B2187 NA NA B3001 1555 1555 2.33 LINK O HOH B2205 NA NA B3001 1555 1555 2.43 LINK O ARG D 553 NA NA D3001 1555 1555 2.40 LINK O LYS D 556 NA NA D3001 1555 1555 2.34 LINK O HOH D2142 NA NA D3001 1555 1555 2.40 LINK O HOH D2144 NA NA D3001 1555 1555 2.70 LINK O HOH D2150 NA NA D3001 1555 1555 2.26 LINK O HOH D2167 NA NA D3001 1555 1555 2.38 CISPEP 1 SER B 342 PRO B 343 0 -13.83 CISPEP 2 SER D 342 PRO D 343 0 -7.80 CISPEP 3 PTR P 279 PRO P 280 0 -2.48 CISPEP 4 PTR Q 279 PRO Q 280 0 -6.22 SITE 1 AC1 6 ARG B 553 LYS B 556 HOH B2170 HOH B2172 SITE 2 AC1 6 HOH B2187 HOH B2205 SITE 1 AC2 6 ARG D 553 LYS D 556 HOH D2142 HOH D2144 SITE 2 AC2 6 HOH D2150 HOH D2167 SITE 1 AC3 7 SER A 288 GLY A 289 GLU A 290 ALA A 291 SITE 2 AC3 7 HOH A2005 HOH A2031 TYR B 540 SITE 1 AC4 10 ILE D 329 GLY D 330 MET D 331 SER D 332 SITE 2 AC4 10 PRO D 333 LYS D 385 HIS D 386 HOH D2016 SITE 3 AC4 10 HOH D2045 HOH D2095 SITE 1 AC5 7 VAL D 488 ARG D 490 CYS D 493 PHE D 506 SITE 2 AC5 7 CYS D 507 HOH D2121 HOH D2174 SITE 1 AC6 10 GLU B 328 GLY B 330 MET B 331 SER B 332 SITE 2 AC6 10 PRO B 333 GLY B 384 LYS B 385 HIS B 386 SITE 3 AC6 10 HOH B2014 HOH B2101 SITE 1 AC7 19 HIS B 363 LEU B 416 ILE B 499 ASP B 519 SITE 2 AC7 19 ALA B 520 GLY B 523 SER B 525 SER B 546 SITE 3 AC7 19 TRP B 547 GLY B 548 GLY B 550 GLY B 558 SITE 4 AC7 19 HOH B2189 HOH B2190 HOH B2191 HOH B2192 SITE 5 AC7 19 HOH B2201 HOH B4001 HOH B4002 SITE 1 AC8 20 HIS D 363 TYR D 367 LEU D 416 ILE D 499 SITE 2 AC8 20 ASP D 519 ALA D 520 GLY D 523 SER D 525 SITE 3 AC8 20 SER D 546 TRP D 547 GLY D 548 GLY D 550 SITE 4 AC8 20 GLY D 558 HOH D2022 HOH D2153 HOH D2155 SITE 5 AC8 20 HOH D2156 HOH D2162 HOH D4001 HOH D4002 CRYST1 149.570 50.560 76.280 90.00 97.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006686 0.000000 0.000839 0.00000 SCALE2 0.000000 0.019778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013212 0.00000